Pam (peptidylglycine alpha-amidating monooxygenase) - Rat Genome Database

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Gene: Pam (peptidylglycine alpha-amidating monooxygenase) Rattus norvegicus
Analyze
Symbol: Pam
Name: peptidylglycine alpha-amidating monooxygenase
RGD ID: 3252
Description: Enables several functions, including metal ion binding activity; peptidylamidoglycolate lyase activity; and peptidylglycine monooxygenase activity. Involved in several processes, including animal organ development; fatty acid primary amide biosynthetic process; and peptide amidation. Located in several cellular components, including perikaryon; secretory granule membrane; and trans-Golgi network. Biomarker of hypothyroidism. Orthologous to human PAM (peptidylglycine alpha-amidating monooxygenase); PARTICIPATES IN melanocortin system pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: basic salivary proline-rich protein 4-like; LOC102553671; peptidyl-glycine alpha-amidating monooxygenase; PHM; uncharacterized LOC102553671
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2997,998,581 - 98,271,966 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl998,122,916 - 98,271,965 (+)Ensembl
Rnor_6.09111,028,543 - 111,177,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9111,028,575 - 111,177,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09110,584,141 - 110,737,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4996,893,071 - 97,047,523 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1997,102,550 - 97,257,003 (+)NCBI
Celera995,564,414 - 95,713,546 (+)NCBICelera
Cytogenetic Map9q37NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (EXP)
aflatoxin B1  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (EXP)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP)
cadmium dichloride  (ISO)
chloropicrin  (ISO)
choline  (ISO)
cisplatin  (ISO)
clofibrate  (ISO)
cobalt dichloride  (EXP)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
cyclosporin A  (ISO)
dexamethasone  (EXP)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
disulfiram  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (EXP)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fonofos  (ISO)
formaldehyde  (ISO)
furan  (EXP)
glafenine  (EXP)
irinotecan  (ISO)
L-methionine  (ISO)
menadione  (ISO)
methyl methanesulfonate  (ISO)
mifepristone  (EXP)
nickel sulfate  (ISO)
nimesulide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
parathion  (ISO)
pentetrazol  (ISO)
phenobarbital  (ISO)
pirinixic acid  (EXP,ISO)
reserpine  (EXP)
S-nitroso-N-acetyl-D-penicillamine  (EXP)
selenium atom  (ISO)
sodium arsenite  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
terbufos  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
topotecan  (EXP)
triclosan  (ISO)
triptonide  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Alam MR, etal., J Biol Chem 1996 Nov 8;271(45):28636-40.
2. Alam MR, etal., Mol Biol Cell. 2001 Mar;12(3):629-44.
3. Bauer JD, etal., J Pharmacol Exp Ther. 2007 Mar;320(3):1171-7. Epub 2006 Nov 30.
4. Bauman AT, etal., Protein Expr Purif. 2007 Jan;51(1):34-8. Epub 2006 Jun 27.
5. Bell-Parikh LC, etal., J Biol Chem. 2001 Aug 10;276(32):29854-63. Epub 2001 Jun 6.
6. Bertelsen AH, etal., Arch Biochem Biophys 1990 May 15;279(1):87-96.
7. Chen L, etal., J Biol Chem 1998 Dec 11;273(50):33524-32.
8. Chew GH, etal., FEBS Lett. 2005 Aug 29;579(21):4678-84.
9. Chufan EE, etal., Structure. 2009 Jul 15;17(7):965-73.
10. Driscoll WJ, etal., Mol Pharmacol. 1999 Jun;55(6):1067-76.
11. Eipper BA, etal., J Biol Chem 1992 Feb 25;267(6):4008-15.
12. El Meskini R, etal., J Biol Chem. 2003 Apr 4;278(14):12278-84. Epub 2003 Jan 14.
13. El Meskini R, etal., Proc Natl Acad Sci U S A. 1998 Jun 9;95(12):7191-6.
14. Elizegi E, etal., Lab Invest. 2001 Dec;81(12):1627-38.
15. Ferraro F, etal., J Biol Chem. 2005 Jul 8;280(27):25424-35. Epub 2005 May 19.
16. Fraboulet S, etal., Endocrinology. 1996 Dec;137(12):5493-501.
17. Francone VP, etal., Mol Endocrinol. 2010 Aug;24(8):1543-58. Epub 2010 Jun 23.
18. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
19. GOA data from the GO Consortium
20. Hand TA, etal., DNA Cell Biol 1996 Dec;15(12):1093-104.
21. Husten EJ and Eipper BA, J Biol Chem. 1991 Sep 15;266(26):17004-10.
22. Kato I, etal., FEBS Lett 1990 Sep 3;269(2):319-23.
23. Labrador V, etal., Circ Res. 2004 Dec 10;95(12):e98-109. Epub 2004 Nov 11.
24. Liu Z, etal., Mol Biotechnol. 2003 May;24(1):21-6.
25. May V and Eipper BA, J Biol Chem. 1985 Dec 25;260(30):16224-31.
26. McIntyre NR, etal., FEBS Lett. 2006 Jan 23;580(2):521-32. Epub 2005 Dec 28.
27. Merkler DJ, etal., Arch Biochem Biophys. 1996 Jun 15;330(2):430-4.
28. MGD data from the GO Consortium
29. Milgram SL, etal., J Biol Chem. 1996 Jul 19;271(29):17526-35.
30. Muth E, etal., Biochim Biophys Acta. 2004 Jun 1;1699(1-2):263-75.
31. NCBI rat LocusLink and RefSeq merged data July 26, 2002
32. Ouafik LH, etal., Mol Endocrinol 1992 Oct;6(10):1571-84.
33. Prigge ST, etal., Nat Struct Biol. 1999 Oct;6(10):976-83. doi: 10.1038/13351.
34. Pritchard LE, etal., J Endocrinol 2002 Mar;172(3):411-21.
35. Prohaska JR and Broderius M, Comp Biochem Physiol B Biochem Mol Biol. 2006 Mar;143(3):360-6. Epub 2006 Jan 31.
36. Prohaska JR, etal., Arch Biochem Biophys. 2005 Feb 1;434(1):212-20.
37. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
38. RGD automated import pipeline for gene-chemical interactions
39. Rocchi P, etal., Cancer Res. 2001 Feb 1;61(3):1196-206.
40. Sharma SD, etal., J Appl Physiol. 2009 Jan;106(1):12-9. Epub 2008 Sep 25.
41. Sobota JA, etal., BMC Neurosci. 2010 Mar 4;11:32.
42. Stoffers DA, etal., Proc Natl Acad Sci U S A 1989 Jan;86(2):735-9.
43. Wilcox BJ, etal., Biochemistry. 1999 Mar 16;38(11):3235-45. doi: 10.1021/bi982255j.
44. Xin X, etal., J Cell Sci. 2004 Sep 15;117(Pt 20):4739-48. Epub 2004 Aug 25.
45. Yang YH, etal., Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2000;32(3):312-315.
46. Zhang J, etal., Dev Biol. 1997 Dec 15;192(2):375-91.
Additional References at PubMed
PMID:1491686   PMID:1572293   PMID:1699535   PMID:1988445   PMID:2211657   PMID:2357221   PMID:7680192   PMID:9360928   PMID:10574929   PMID:12369828   PMID:12699694   PMID:14559897  
PMID:15131304   PMID:16325307   PMID:17301036   PMID:19199708   PMID:19946888   PMID:22871113   PMID:23247335   PMID:23376485   PMID:23533145   PMID:24627494   PMID:26170456   PMID:34061983  


Genomics

Comparative Map Data
Pam
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2997,998,581 - 98,271,966 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl998,122,916 - 98,271,965 (+)Ensembl
Rnor_6.09111,028,543 - 111,177,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9111,028,575 - 111,177,602 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09110,584,141 - 110,737,487 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4996,893,071 - 97,047,523 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1997,102,550 - 97,257,003 (+)NCBI
Celera995,564,414 - 95,713,546 (+)NCBICelera
Cytogenetic Map9q37NCBI
PAM
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5102,753,981 - 103,029,730 (+)EnsemblGRCh38hg38GRCh38
GRCh385102,754,783 - 103,031,105 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375102,090,487 - 102,366,809 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365102,229,426 - 102,393,316 (+)NCBINCBI36hg18NCBI36
Build 345102,229,425 - 102,393,315NCBI
Celera598,149,342 - 98,314,632 (+)NCBI
Cytogenetic Map5q21.1NCBI
HuRef597,382,969 - 97,548,060 (+)NCBIHuRef
CHM1_15101,633,901 - 101,799,441 (+)NCBICHM1_1
Pam
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39197,748,816 - 98,023,578 (-)NCBIGRCm39mm39
GRCm39 Ensembl197,722,839 - 98,023,371 (-)Ensembl
GRCm38197,821,091 - 98,095,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl197,795,114 - 98,095,646 (-)EnsemblGRCm38mm10GRCm38
MGSCv37199,717,671 - 99,992,209 (-)NCBIGRCm37mm9NCBIm37
MGSCv36199,651,500 - 99,925,919 (-)NCBImm8
Celera1100,701,674 - 100,975,784 (-)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.76NCBI
Pam
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541810,953,696 - 11,107,667 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541810,953,044 - 11,107,668 (-)NCBIChiLan1.0ChiLan1.0
PAM
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15103,803,846 - 104,085,774 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5103,913,456 - 104,085,774 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0598,104,058 - 98,385,157 (+)NCBIMhudiblu_PPA_v0panPan3
PAM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.138,141,508 - 8,312,081 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl38,142,061 - 8,290,477 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha39,543,047 - 9,693,485 (-)NCBI
ROS_Cfam_1.038,029,782 - 8,180,284 (-)NCBI
ROS_Cfam_1.0 Ensembl38,029,980 - 8,180,292 (-)Ensembl
UMICH_Zoey_3.137,970,219 - 8,120,392 (-)NCBI
UNSW_CanFamBas_1.037,988,856 - 8,139,107 (-)NCBI
UU_Cfam_GSD_1.038,148,827 - 8,299,174 (-)NCBI
Pam
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213163,307,429 - 163,485,516 (-)NCBI
SpeTri2.0NW_0049365231,492,795 - 1,786,942 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PAM
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2108,255,930 - 108,536,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12108,255,923 - 108,536,192 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22112,397,471 - 112,553,945 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PAM
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,316,428 - 6,482,959 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl236,316,428 - 6,486,751 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660367,849,169 - 8,133,685 (-)NCBIVero_WHO_p1.0
Pam
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474320,834,664 - 21,178,933 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
AI170526  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2998,191,436 - 98,191,591 (+)MAPPERmRatBN7.2
Rnor_6.09111,097,092 - 111,097,246NCBIRnor6.0
Rnor_5.09110,668,057 - 110,668,211UniSTSRnor5.0
RGSC_v3.4996,964,578 - 96,964,732UniSTSRGSC3.4
Celera995,632,772 - 95,632,926UniSTS
RH 3.4 Map9817.3UniSTS
Cytogenetic Map9q36UniSTS
U79523  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2998,271,363 - 98,271,452 (+)MAPPERmRatBN7.2
Rnor_6.09111,176,986 - 111,177,074NCBIRnor6.0
Rnor_5.09110,584,655 - 110,584,743UniSTSRnor5.0
RGSC_v3.4997,046,931 - 97,047,019UniSTSRGSC3.4
Celera995,712,954 - 95,713,042UniSTS
Cytogenetic Map9q36UniSTS
RH144149  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2998,124,574 - 98,124,684 (+)MAPPERmRatBN7.2
Rnor_6.09111,030,236 - 111,030,345NCBIRnor6.0
Rnor_5.09110,735,673 - 110,735,782UniSTSRnor5.0
RGSC_v3.4996,894,614 - 96,894,723UniSTSRGSC3.4
Celera995,565,957 - 95,566,066UniSTS
RH 3.4 Map9817.4UniSTS
Cytogenetic Map9q36UniSTS
RH139176  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2998,122,201 - 98,122,321 (+)MAPPERmRatBN7.2
Rnor_6.09111,027,863 - 111,027,982NCBIRnor6.0
Rnor_5.09110,738,036 - 110,738,155UniSTSRnor5.0
RGSC_v3.4996,892,241 - 96,892,360UniSTSRGSC3.4
Celera995,563,584 - 95,563,703UniSTS
RH 3.4 Map9819.59UniSTS
Cytogenetic Map9q36UniSTS
BE106993  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2998,226,653 - 98,226,823 (+)MAPPERmRatBN7.2
Rnor_6.09111,132,308 - 111,132,477NCBIRnor6.0
Rnor_5.09110,632,357 - 110,632,526UniSTSRnor5.0
RGSC_v3.4997,001,707 - 97,001,876UniSTSRGSC3.4
Celera995,668,305 - 95,668,474UniSTS
RH 3.4 Map9818.6UniSTS
Cytogenetic Map9q36UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724544Uae9Urinary albumin excretion QTL 94.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)925268044114175309Rat
731164Uae25Urinary albumin excretion QTL 253.50.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)925661188100929786Rat
1578760Cm53Cardiac mass QTL 533.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)956771635101771635Rat
724515Uae16Urinary albumin excretion QTL 168urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)958163035100929646Rat
1300134Bp185Blood pressure QTL 1853.73arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)961381434104821652Rat
61385Edpm9Estrogen-dependent pituitary mass QTL 93.430.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)963869687108869687Rat
731171Glom6Glomerulus QTL 62.80.0003kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)964573531109573531Rat
1354626Bvd1Brain ventricular dilatation QTL 13.730.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)975712843111552878Rat
4889852Pur26Proteinuria QTL 26150.001total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)977813894101597663Rat
7794784Mcs31Mammary carcinoma susceptibility QTL 312.98mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)977813894111552878Rat
724547Cm21Cardiac mass QTL 212.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)979271511102910209Rat
1582203Gluco19Glucose level QTL 193.30.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)992491589100929786Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:743
Count of miRNA genes:238
Interacting mature miRNAs:291
Transcripts:ENSRNOT00000041418, ENSRNOT00000043451, ENSRNOT00000044154, ENSRNOT00000049205, ENSRNOT00000049286, ENSRNOT00000056457
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High 2
Medium 3 41 46 35 13 35 8 11 74 35 39 11 8
Low 11 6 6 6 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006245599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008767360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017596288 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083047 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039083049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH005929 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M25719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M25732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M82845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X59689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000041418   ⟹   ENSRNOP00000050784
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl998,122,916 - 98,271,298 (+)Ensembl
Rnor_6.0 Ensembl9111,028,824 - 111,109,582 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000043451   ⟹   ENSRNOP00000046774
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl998,123,032 - 98,271,956 (+)Ensembl
Rnor_6.0 Ensembl9111,028,575 - 111,177,602 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000056457   ⟹   ENSRNOP00000053295
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl998,123,213 - 98,271,961 (+)Ensembl
Rnor_6.0 Ensembl9111,028,874 - 111,177,583 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102263   ⟹   ENSRNOP00000079092
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl998,122,916 - 98,271,956 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117663   ⟹   ENSRNOP00000089015
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl998,122,916 - 98,271,956 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000118414   ⟹   ENSRNOP00000087123
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl998,122,916 - 98,271,965 (+)Ensembl
RefSeq Acc Id: NM_013000   ⟹   NP_037132
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,123,032 - 98,271,956 (+)NCBI
Rnor_6.09111,028,693 - 111,177,578 (+)NCBI
Rnor_5.09110,584,141 - 110,737,487 (-)NCBI
RGSC_v3.4996,893,071 - 97,047,523 (+)RGD
Celera995,564,414 - 95,713,546 (+)RGD
Sequence:
RefSeq Acc Id: XM_006245594   ⟹   XP_006245656
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,298 (+)NCBI
Rnor_6.09111,028,543 - 111,177,588 (+)NCBI
Rnor_5.09110,584,141 - 110,737,487 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006245597   ⟹   XP_006245659
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,966 (+)NCBI
Rnor_6.09111,028,543 - 111,177,588 (+)NCBI
Rnor_5.09110,584,141 - 110,737,487 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008767360   ⟹   XP_008765582
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,966 (+)NCBI
Rnor_6.09111,028,543 - 111,177,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596286   ⟹   XP_017451775
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,966 (+)NCBI
Rnor_6.09111,028,543 - 111,177,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017596287   ⟹   XP_017451776
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,298 (+)NCBI
Rnor_6.09111,028,543 - 111,177,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039083038   ⟹   XP_038938966
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,593 - 98,271,298 (+)NCBI
RefSeq Acc Id: XM_039083039   ⟹   XP_038938967
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2998,121,990 - 98,271,298 (+)NCBI
RefSeq Acc Id: XM_039083040   ⟹   XP_038938968
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,966 (+)NCBI
RefSeq Acc Id: XM_039083041   ⟹   XP_038938969
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,955 (+)NCBI
RefSeq Acc Id: XM_039083042   ⟹   XP_038938970
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,955 (+)NCBI
RefSeq Acc Id: XM_039083043   ⟹   XP_038938971
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,298 (+)NCBI
RefSeq Acc Id: XM_039083044   ⟹   XP_038938972
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,955 (+)NCBI
RefSeq Acc Id: XM_039083045   ⟹   XP_038938973
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,298 (+)NCBI
RefSeq Acc Id: XM_039083046   ⟹   XP_038938974
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,298 (+)NCBI
RefSeq Acc Id: XM_039083047   ⟹   XP_038938975
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,955 (+)NCBI
RefSeq Acc Id: XM_039083048   ⟹   XP_038938976
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,298 (+)NCBI
RefSeq Acc Id: XM_039083049   ⟹   XP_038938977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2997,998,581 - 98,271,664 (+)NCBI
Protein Sequences
Protein RefSeqs NP_037132 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245656 (Get FASTA)   NCBI Sequence Viewer  
  XP_006245659 (Get FASTA)   NCBI Sequence Viewer  
  XP_008765582 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451775 (Get FASTA)   NCBI Sequence Viewer  
  XP_017451776 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938966 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938967 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938968 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938969 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938970 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938971 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938972 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938973 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938974 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938975 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938976 (Get FASTA)   NCBI Sequence Viewer  
  XP_038938977 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41803 (Get FASTA)   NCBI Sequence Viewer  
  AAA41804 (Get FASTA)   NCBI Sequence Viewer  
  AAB00162 (Get FASTA)   NCBI Sequence Viewer  
  AAC05607 (Get FASTA)   NCBI Sequence Viewer  
  CAA42206 (Get FASTA)   NCBI Sequence Viewer  
  CAA42207 (Get FASTA)   NCBI Sequence Viewer  
  CAA42208 (Get FASTA)   NCBI Sequence Viewer  
  CAA42209 (Get FASTA)   NCBI Sequence Viewer  
  CAA42210 (Get FASTA)   NCBI Sequence Viewer  
  EDL91859 (Get FASTA)   NCBI Sequence Viewer  
  EDL91860 (Get FASTA)   NCBI Sequence Viewer  
  EDL91861 (Get FASTA)   NCBI Sequence Viewer  
  EDL91862 (Get FASTA)   NCBI Sequence Viewer  
  EDL91863 (Get FASTA)   NCBI Sequence Viewer  
  EDL91864 (Get FASTA)   NCBI Sequence Viewer  
  EDL91865 (Get FASTA)   NCBI Sequence Viewer  
  EDL91866 (Get FASTA)   NCBI Sequence Viewer  
  EDL91867 (Get FASTA)   NCBI Sequence Viewer  
  EDL91868 (Get FASTA)   NCBI Sequence Viewer  
  EDL91869 (Get FASTA)   NCBI Sequence Viewer  
  EDL91870 (Get FASTA)   NCBI Sequence Viewer  
  EDL91871 (Get FASTA)   NCBI Sequence Viewer  
  EDL91872 (Get FASTA)   NCBI Sequence Viewer  
  EDL91873 (Get FASTA)   NCBI Sequence Viewer  
  EDL91874 (Get FASTA)   NCBI Sequence Viewer  
  EDL91875 (Get FASTA)   NCBI Sequence Viewer  
  EDL91876 (Get FASTA)   NCBI Sequence Viewer  
  P14925 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_037132   ⟸   NM_013000
- Peptide Label: precursor
- UniProtKB: P14925 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006245659   ⟸   XM_006245597
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006245656   ⟸   XM_006245594
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008765582   ⟸   XM_008767360
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017451775   ⟸   XM_017596286
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017451776   ⟸   XM_017596287
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000046774   ⟸   ENSRNOT00000043451
RefSeq Acc Id: ENSRNOP00000050784   ⟸   ENSRNOT00000041418
RefSeq Acc Id: ENSRNOP00000053295   ⟸   ENSRNOT00000056457
RefSeq Acc Id: XP_038938968   ⟸   XM_039083040
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038938969   ⟸   XM_039083041
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038938970   ⟸   XM_039083042
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038938972   ⟸   XM_039083044
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038938975   ⟸   XM_039083047
- Peptide Label: isoform X13
RefSeq Acc Id: XP_038938977   ⟸   XM_039083049
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038938971   ⟸   XM_039083043
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038938973   ⟸   XM_039083045
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038938974   ⟸   XM_039083046
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038938976   ⟸   XM_039083048
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038938966   ⟸   XM_039083038
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038938967   ⟸   XM_039083039
- Peptide Label: isoform X1
RefSeq Acc Id: ENSRNOP00000087123   ⟸   ENSRNOT00000118414
RefSeq Acc Id: ENSRNOP00000079092   ⟸   ENSRNOT00000102263
RefSeq Acc Id: ENSRNOP00000089015   ⟸   ENSRNOT00000117663

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13696894
Promoter ID:EPDNEW_R7419
Type:initiation region
Name:Pam_1
Description:peptidylglycine alpha-amidating monooxygenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7420  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09111,028,614 - 111,028,674EPDNEW
RGD ID:13696896
Promoter ID:EPDNEW_R7420
Type:initiation region
Name:Pam_2
Description:peptidylglycine alpha-amidating monooxygenase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R7419  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.09111,028,728 - 111,028,788EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
9 110659094 110659095 G A snv Crl:SD (UDEL), LE/OrlBarth (UDEL)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3252 AgrOrtholog
Ensembl Genes ENSRNOG00000033280 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSRNOP00000046774 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000050784 UniProtKB/Swiss-Prot
  ENSRNOP00000053295 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000079092 ENTREZGENE
  ENSRNOP00000087123 ENTREZGENE
  ENSRNOP00000089015 ENTREZGENE
Ensembl Transcript ENSRNOT00000041418 UniProtKB/Swiss-Prot
  ENSRNOT00000043451 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000056457 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000102263 ENTREZGENE
  ENSRNOT00000117663 ENTREZGENE
  ENSRNOT00000118414 ENTREZGENE
Gene3D-CATH 2.120.10.30 UniProtKB/Swiss-Prot
  2.60.120.230 UniProtKB/Swiss-Prot
  2.60.120.310 UniProtKB/Swiss-Prot
InterPro 6-blade_b-propeller_TolB-like UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase-like_C UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_CS-1 UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_CS-2 UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_N UniProtKB/Swiss-Prot
  Cu2_ascorb_mOase_N_sf UniProtKB/Swiss-Prot
  Cu2_monoox_C UniProtKB/Swiss-Prot
  NHL_repeat UniProtKB/Swiss-Prot
  NHL_repeat_subgr UniProtKB/Swiss-Prot
  PHM/PAL UniProtKB/Swiss-Prot
  PHM/PNGase_F_dom_sf UniProtKB/Swiss-Prot
KEGG Report rno:25508 UniProtKB/Swiss-Prot
NCBI Gene 25508 ENTREZGENE
Pfam Cu2_monoox_C UniProtKB/Swiss-Prot
  Cu2_monooxygen UniProtKB/Swiss-Prot
  NHL UniProtKB/Swiss-Prot
PhenoGen Pam PhenoGen
PRINTS PAMONOXGNASE UniProtKB/Swiss-Prot
PROSITE CU2_MONOOXYGENASE_1 UniProtKB/Swiss-Prot
  CU2_MONOOXYGENASE_2 UniProtKB/Swiss-Prot
  NHL UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49742 UniProtKB/Swiss-Prot
UniProt AMD_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary P70710 UniProtKB/Swiss-Prot
  Q64616 UniProtKB/Swiss-Prot
  Q64668 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Pam  peptidylglycine alpha-amidating monooxygenase  LOC102553671  uncharacterized LOC102553671  Data Merged 737654 PROVISIONAL
2013-12-17 LOC102553671  uncharacterized LOC102553671      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Pam  Peptidylglycine alpha-amidating monooxygenase      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation enzyme activity depends on copper, ascorbate, and molecular oxygen 729451