altered nucleotide excision repair pathway - Ontology Report - Rat Genome Database

Submit Data | Help | Video Tutorials | News | Publications | Download | REST API | Citing RGD | Contact

Advanced Search (OLGA)

PATHWAY ONTOLOGY - ANNOTATIONS	{{ watchLinkText }}
The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:	altered nucleotide excision repair pathway	go back to main search page
Accession:	PW:0001359	browse the term
Definition:	A nucleotide excision repair pathway that deviates from what its normal course should be. Defects in this repair pathway have been associated with cancer and premature aging.
Synonyms:	related_synonym:	altered NER pathway

View Interactive Diagram

show annotations for term's descendants Sort by:
Rat (9) Mouse (9) Human (9) Chinchilla (8) Bonobo (9) Dog (9) Squirrel (9) Pig (9) Green Monkey (8) Naked Mole-rat (9) All
Genes (9)

altered nucleotide excision repair pathway

term browser

Symbol

Object Name

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

G

damage specific DNA binding protein 1

RGD

NCBI chr19:10,582,961...10,607,186
Ensembl chr19:10,582,691...10,607,183

G

excision repair cross-complementing rodent repair deficiency, complementation group 2

RGD

NCBI chr 7:19,115,942...19,129,619
Ensembl chr 7:19,115,935...19,129,619

G

excision repair cross-complementing rodent repair deficiency, complementation group 3

RGD

NCBI chr18:32,373,357...32,403,206
Ensembl chr18:32,373,353...32,403,204

G

excision repair cross-complementing rodent repair deficiency, complementation group 4

in silico assessment of alteration of DNA-protein, protein-protein interactions and observed reduction of DNA repair capacity in the context of nucleotide excision repair pathway for SNP

RGD

PMID:22824526 PMID:24004570

RGD:7246919, RGD:9588971

NCBI chr16:12,927,600...12,969,873
Ensembl chr16:12,927,548...12,968,481

G

excision repair cross-complementing rodent repair deficiency, complementation group 5

RGD

NCBI chr 1:44,184,084...44,220,399
Ensembl chr 1:44,186,904...44,220,420

G

excision repair cross-complementing rodent repair deficiency, complementation group 6

RGD

NCBI chr14:32,235,248...32,302,947
Ensembl chr14:32,235,478...32,302,947

G

excision repaiross-complementing rodent repair deficiency, complementation group 8

RGD

NCBI chr13:108,295,246...108,337,738
Ensembl chr13:108,295,265...108,331,898

G

xeroderma pigmentosum, complementation group A

RGD

NCBI chr 4:46,175,222...46,196,317
Ensembl chr 4:46,155,347...46,196,311

G

xeroderma pigmentosum, complementation group C

RGD

NCBI chr 6:91,466,287...91,492,870
Ensembl chr 6:91,466,287...91,492,870

Term paths to the root

Path 1
Term	Annotations
pathway	6074
regulatory pathway	3686
pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis	1656
DNA repair pathway	382
single-strand DNA repair pathway	84
altered single-strand DNA repair pathway	14
altered nucleotide excision repair pathway	9
Path 2
Term	Annotations
pathway	6074
regulatory pathway	3686
pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis	1656
DNA damage response pathway	403
DNA repair pathway	382
altered DNA repair pathway	14
altered single-strand DNA repair pathway	14
altered nucleotide excision repair pathway	9

paths to the root