Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:protein localization to phagophore assembly site
go back to main search page
Accession:GO:0034497 term browser browse the term
Definition:Any process in which a protein is transported to, or maintained at, the phagophore assembly site (PAS).
Synonyms:exact_synonym: protein localisation to phagophore assembly site;   protein localization to PAS
 narrow_synonym: protein localization to pre-autophagosomal structure


show annotations for term's descendants           Sort by:
protein localization to phagophore assembly site term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFIP2 ADP ribosylation factor interacting protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:6,608,393...6,613,245
Ensembl chr11:6,290,034...6,296,817 		JBrowse link
G ATG13 autophagy related 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:46,567,728...46,623,609
Ensembl chr11:47,126,380...47,182,850 		JBrowse link
G ATG16L1 autophagy related 16 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI		 PMID:24954904 GO_REF:0000107 NCBI chr2B:120,479,534...120,523,563
Ensembl chr2B:239,392,990...239,436,766 		JBrowse link
G ATG4B autophagy related 4B cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:128,913,323...128,950,112
Ensembl chr2B:247,702,880...247,738,977 		JBrowse link
G ATG4D autophagy related 4D cysteine peptidase involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:10,095,768...10,105,250
Ensembl chr19:10,758,544...10,767,712 		JBrowse link
G ATG9A autophagy related 9A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:106,477,007...106,487,249
Ensembl chr2B:225,067,590...225,078,065 		JBrowse link
G ATG9B autophagy related 9B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:142,600,894...142,614,336
Ensembl chr 7:154,756,535...154,764,744 		JBrowse link
G LOC100989136 WD repeat domain phosphoinositide-interacting protein 3-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:24,663,180...24,665,836 JBrowse link
G LRBA LPS responsive beige-like anchor protein involved_in ISO (PMID:33773106) UniProt PMID:33773106 NCBI chr 4:142,597,002...143,388,115
Ensembl chr 4:154,247,287...155,006,875 		JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 1:10,729,933...10,764,865
Ensembl chr 1:11,945,880...11,981,077 		JBrowse link
G PACS2 phosphofurin acidic cluster sorting protein 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr14:85,935,807...86,035,935
Ensembl chr14:105,737,878...105,810,349 		JBrowse link
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24098492) Ensembl
MGI		 PMID:24098492 GO_REF:0000107 NCBI chr18:35,203,896...35,336,512
Ensembl chr18:38,754,789...38,882,037 		JBrowse link
G PRAF2 PRA1 domain family member 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:41,369,432...41,372,322
Ensembl chr  X:49,224,864...49,233,960 		JBrowse link
G STX17 syntaxin 17 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:23455425) MGI
Ensembl		 PMID:23455425 GO_REF:0000107 NCBI chr 9:70,989,913...71,058,374
Ensembl chr 9:99,107,243...99,168,801 		JBrowse link
G WDR45 WD repeat domain 45 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:41,372,722...41,400,441
Ensembl chr  X:49,224,864...49,233,960 		JBrowse link
G WDR45B WD repeat domain 45B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:77,028,543...77,058,075
Ensembl chr17:82,829,546...82,863,803 		JBrowse link
G WIPI1 WD repeat domain, phosphoinositide interacting 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:62,357,952...62,394,620
Ensembl chr17:67,748,201...67,784,389 		JBrowse link
G WIPI2 WD repeat domain, phosphoinositide interacting 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24954904) Ensembl
MGI
TreeGrafter		 PMID:24954904 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:5,446,621...5,488,170
Ensembl chr 7:5,467,334...5,510,538 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16447
    cellular process 15499
      cellular localization 3510
        cellular macromolecule localization 2541
          protein localization 2529
            protein localization to phagophore assembly site 18
Path 2
Term Annotations click to browse term
  biological_process 16447
    metabolic process 10323
      cellular metabolic process 8636
        cellular catabolic process 1021
          autophagy 508
            macroautophagy 312
              autophagosome organization 123
                autophagosome assembly 115
                  protein localization to phagophore assembly site 18
paths to the root