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ONTOLOGY REPORT - ANNOTATIONS

Term:excitatory synapse assembly
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Accession:GO:1904861 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form an excitatory synapse.
Synonyms:exact_synonym: excitatory synapse formation

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show annotations for term's descendants           Sort by:
excitatory synapse assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clstn3 calsyntenin 3 involved_in ISO (MGI:5516394|PMID:24094106) UniProt PMID:24094106 MGI:5516394 NCBI chrNW_004624860:3,710,121...3,737,617
Ensembl chrNW_004624860:3,709,139...3,738,221 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:23074245)
(PMID:31141683)		 MGI PMID:23074245 PMID:31141683 NCBI chrNW_004624800:7,182,588...9,280,407
Ensembl chrNW_004624800:7,181,020...9,279,678 		JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISO (PMID:27418511) UniProt PMID:27418511 NCBI chrNW_004624757:19,967,428...21,497,009
Ensembl chrNW_004624757:19,967,840...21,498,318 		JBrowse link
G Lrrc4 leucine rich repeat containing 4 acts_upstream_of_or_within ISO (PMID:16980967) MGI PMID:16980967 NCBI chrNW_004624783:7,934,627...7,937,723
Ensembl chrNW_004624783:7,934,791...8,122,933 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO (MGI:5908777|PMID:26440732)
(MGI:5780536|PMID:22960622)		 ARUK-UCL
ParkinsonsUK-UCL		 PMID:22960622 PMID:26440732 MGI:5780536 MGI:5908777 NCBI chrNW_004624730:51,451,546...52,300,413
Ensembl chrNW_004624730:51,650,815...52,295,023 		JBrowse link
G Nptn neuroplastin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24554721) Ensembl
MGI		 PMID:24554721 GO_REF:0000107 NCBI chrNW_004624781:752,048...818,250
Ensembl chrNW_004624781:751,912...819,847 		JBrowse link
G Plxnb2 plexin B2 involved_in ISO (MGI:6269924|PMID:29981480) UniProt PMID:29981480 MGI:6269924 NCBI chrNW_004624752:473,451...498,555
Ensembl chrNW_004624752:469,973...498,729 		JBrowse link
G Srgap2 SLIT-ROBO Rho GTPase activating protein 2 involved_in ISO (PMID:27373832)
(MGI:5829526|PMID:27373832)		 UniProt PMID:27373832 MGI:5829526 NCBI chrNW_004624807:4,937,573...5,169,104
Ensembl chrNW_004624807:4,935,472...5,169,050 		JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:5284797|PMID:15620359)
(PMID:29107521)		 BHF-UCL
MGI		 PMID:15620359 PMID:29107521 MGI:5284797 NCBI chrNW_004624786:10,019,307...10,034,624
Ensembl chrNW_004624786:10,022,717...10,034,624 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692) BHF-UCL PMID:15620359 PMID:21424692 MGI:5284797 MGI:5285129 NCBI chrNW_004624738:31,134,551...32,273,596
Ensembl chrNW_004624738:31,133,346...32,273,565 		JBrowse link
G Nrxn2 neurexin 2 involved_in ISO (MGI:5285129|PMID:21424692) BHF-UCL PMID:21424692 MGI:5285129 NCBI chrNW_004624767:21,659,677...21,768,696
Ensembl chrNW_004624767:21,668,466...21,771,304 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 acts_upstream_of_or_within ISO (PMID:29107521) MGI PMID:29107521 NCBI chrNW_004624730:43,175,690...43,191,689
Ensembl chrNW_004624730:43,181,820...43,191,531 		JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624760:6,273,989...6,276,788
Ensembl chrNW_004624760:6,273,994...6,276,776 		JBrowse link
negative regulation of excitatory synapse assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clstn3 calsyntenin 3 involved_in ISO (MGI:7275955|PMID:35420982) UniProt PMID:35420982 MGI:7275955 NCBI chrNW_004624860:3,710,121...3,737,617
Ensembl chrNW_004624860:3,709,139...3,738,221 		JBrowse link
G Ptpn13 protein tyrosine phosphatase non-receptor type 13 ISO RGD PMID:23769722 RGD:152975632 NCBI chrNW_004624872:3,183,381...3,406,339
Ensembl chrNW_004624872:3,226,000...3,405,805 		JBrowse link
positive regulation of excitatory synapse assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema4a semaphorin 4A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624885:1,470,666...1,493,634
Ensembl chrNW_004624885:1,470,525...1,495,369 		JBrowse link
G Vstm5 V-set and transmembrane domain containing 5 involved_in ISO (MGI:5800585|PMID:27683913) UniProt PMID:27683913 MGI:5800585 NCBI chrNW_004624735:38,455,821...38,502,864 JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:21670302) ParkinsonsUK-UCL PMID:21670302 NCBI chrNW_004624796:12,431,310...12,472,303
Ensembl chrNW_004624796:12,431,959...12,472,303 		JBrowse link
postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1ql2 complement C1q like 2 involved_in ISO (PMID:27133466) SynGO PMID:27133466 NCBI chrNW_004624732:26,031,010...26,034,163
Ensembl chrNW_004624732:26,032,021...26,034,552 		JBrowse link
G C1ql3 complement C1q like 3 involved_in ISO (PMID:27133466) SynGO PMID:27133466 NCBI chrNW_004624796:11,239,297...11,246,800
Ensembl chrNW_004624796:11,239,077...11,248,111 		JBrowse link
G Csmd2 CUB and Sushi multiple domains 2 involved_in ISO (PMID:31068362) SynGO PMID:31068362 NCBI chrNW_004624764:16,597,719...17,179,729
Ensembl chrNW_004624764:16,600,854...17,179,612 		JBrowse link
G Nptx1 neuronal pentraxin 1 involved_in ISO PMID:29024665 SynGO PMID:29024665 RGD:13702141 NCBI chrNW_004624801:9,628,878...9,637,869
Ensembl chrNW_004624801:9,628,882...9,637,859 		JBrowse link
G Nrxn3 neurexin 3 involved_in ISO (PMID:27133466) SynGO PMID:27133466 NCBI chrNW_004624734:22,161,837...23,757,367
Ensembl chrNW_004624734:22,163,166...23,692,660 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 involved_in ISO PMID:21262467 SynGO PMID:21262467 RGD:13702219 NCBI chrNW_004624768:15,239,111...15,619,979
Ensembl chrNW_004624768:15,252,354...15,619,601 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) CACAO PMID:18082964 MGI:3772418 NCBI chrNW_004624791:13,975,235...14,056,900 JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (MGI:4948759|PMID:21423165) BHF-UCL PMID:21423165 MGI:4948759 NCBI chrNW_004624752:72,545...127,321
Ensembl chrNW_004624752:72,615...127,325 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 acts_upstream_of_or_within ISO (PMID:29107521) MGI PMID:29107521 NCBI chrNW_004624730:43,175,690...43,191,689
Ensembl chrNW_004624730:43,181,820...43,191,531 		JBrowse link
regulation of excitatory synapse assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clstn3 calsyntenin 3 involved_in ISO (MGI:6445033|PMID:32434929) UniProt PMID:32434929 MGI:6445033 NCBI chrNW_004624860:3,710,121...3,737,617
Ensembl chrNW_004624860:3,709,139...3,738,221 		JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in ISO PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chrNW_004624789:14,382,216...14,687,434
Ensembl chrNW_004624789:14,383,162...14,687,395 		JBrowse link
G Caskin1 CASK interacting protein 1 involved_in ISO (PMID:31727973) SynGO PMID:31727973 NCBI chrNW_004624913:62,217...79,228
Ensembl chrNW_004624913:62,332...77,819 		JBrowse link
G Cbln1 cerebellin 1 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624757:7,264,425...7,267,979
Ensembl chrNW_004624757:7,264,434...7,268,105 		JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in ISO PMID:10570482 SynGO PMID:10570482 RGD:8554363 NCBI chrNW_004624738:28,067,615...28,079,593
Ensembl chrNW_004624738:28,067,616...28,077,238 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 involved_in ISO (PMID:32324534) SynGO PMID:32324534 NCBI chrNW_004624780:5,161,245...5,212,641
Ensembl chrNW_004624780:5,161,073...5,213,870 		JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in ISO (PMID:20395510) SynGO PMID:20395510 NCBI chrNW_004624757:19,967,428...21,497,009
Ensembl chrNW_004624757:19,967,840...21,498,318 		JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in ISO (PMID:22357843) SynGO PMID:22357843 NCBI chrNW_004624730:66,491,230...66,625,642 JBrowse link
G Lats1 large tumor suppressor kinase 1 involved_in ISO PMID:29317530 SynGO PMID:29317530 RGD:405650325 NCBI chrNW_004624785:8,356,238...8,405,877
Ensembl chrNW_004624785:8,369,922...8,408,919 		JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in ISO PMID:16630835 SynGO PMID:16630835 RGD:13702351 NCBI chrNW_004624794:12,651,391...12,663,781
Ensembl chrNW_004624794:12,650,929...12,658,798 		JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624767:19,589,631...19,593,302
Ensembl chrNW_004624767:19,589,631...19,593,705 		JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in ISO PMID:19252495 SynGO PMID:19252495 RGD:13702321 NCBI chrNW_004624832:4,032,976...4,062,198
Ensembl chrNW_004624832:4,043,994...4,062,160 		JBrowse link
G Lrrtm1 leucine rich repeat transmembrane neuronal 1 involved_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chrNW_004624749:22,695,726...22,698,161
Ensembl chrNW_004624749:22,695,241...22,698,604 		JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chrNW_004624743:31,648,543...31,651,772
Ensembl chrNW_004624743:31,644,209...31,651,688 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO (PMID:32324534) SynGO PMID:32324534 NCBI chrNW_004624730:51,451,546...52,300,413
Ensembl chrNW_004624730:51,650,815...52,295,023 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:21410790) SynGO PMID:21410790 NCBI chrNW_004624738:31,134,551...32,273,596
Ensembl chrNW_004624738:31,133,346...32,273,565 		JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:34613779) SynGO PMID:34613779 NCBI chrNW_004624816:10,087,866...10,185,004
Ensembl chrNW_004624816:10,164,666...10,184,994 		JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (PMID:23711981), (PMID:34613779) SynGO PMID:23711981 PMID:34613779 NCBI chrNW_004624888:1,537,080...1,825,955
Ensembl chrNW_004624888:1,537,138...1,821,215 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:22,065,448...22,182,604
Ensembl chrNW_004624758:22,124,836...22,182,605 		JBrowse link
G Ptprd protein tyrosine phosphatase receptor type D involved_in ISO PMID:29024665
(PMID:22357843)		 SynGO PMID:22357843 PMID:29024665 RGD:13702141 NCBI chrNW_004624736:12,874,884...13,558,030
Ensembl chrNW_004624736:12,874,706...13,278,956 		JBrowse link
G Ptprs protein tyrosine phosphatase receptor type S involved_in ISO PMID:21262467
(PMID:21262467)		 SynGO PMID:21262467 RGD:13702219 NCBI chrNW_004624828:4,688,555...4,764,805
Ensembl chrNW_004624828:4,716,249...4,764,614 		JBrowse link
G Sipa1l1 signal induced proliferation associated 1 like 1 involved_in ISO PMID:11502259 SynGO PMID:11502259 RGD:8554032 NCBI chrNW_004624734:29,612,867...29,998,602
Ensembl chrNW_004624734:29,611,978...29,914,317 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    multicellular organismal process 7111
      multicellular organism development 4711
        system development 4117
          nervous system development 2595
            synapse assembly 289
              excitatory synapse assembly 43
                negative regulation of excitatory synapse assembly 2
                positive regulation of excitatory synapse assembly 3
                postsynaptic density assembly + 33
                regulation of excitatory synapse assembly + 26
Path 2
Term Annotations click to browse term
  biological_process 15093
    cellular process 14237
      cellular component organization or biogenesis 6217
        cellular component organization 6020
          cellular component assembly 2852
            cell junction assembly 531
              synapse assembly 289
                excitatory synapse assembly 43
                  negative regulation of excitatory synapse assembly 2
                  positive regulation of excitatory synapse assembly 3
                  postsynaptic density assembly + 33
                  regulation of excitatory synapse assembly + 26
paths to the root