Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cellular response to virus
go back to main search page
Accession:GO:0098586 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
cellular response to virus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adar adenosine deaminase RNA specific involved_in ISO (MGI:5645191|PMID:24882218) UniProt PMID:24882218 MGI:5645191 NCBI chrNW_004955545:1,078,319...1,106,938
Ensembl chrNW_004955545:1,078,319...1,106,938 		JBrowse link
G Atf2 activating transcription factor 2 involved_in ISO (PMID:18802055) MGI PMID:18802055 NCBI chrNW_004955449:332,563...411,218
Ensembl chrNW_004955449:338,193...411,218 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in ISO (PMID:25609812) UniProt PMID:25609812 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244 		JBrowse link
G Calr calreticulin ISO RGD PMID:31399043 RGD:151347548 NCBI chrNW_004955415:31,985,147...31,989,372
Ensembl chrNW_004955415:31,985,147...31,989,372 		JBrowse link
G Chuk component of inhibitor of nuclear factor kappa B kinase complex involved_in ISO (PMID:24784232)
(MGI:5583923|PMID:24784232)		 CAFA PMID:24784232 MGI:5583923 NCBI chrNW_004955507:6,066,026...6,102,066
Ensembl chrNW_004955507:6,067,203...6,102,001 		JBrowse link
G Crebbp CREB binding protein involved_in ISO (MGI:2151262|PMID:11583620) CAFA PMID:11583620 MGI:2151262 NCBI chrNW_004955442:13,559,496...13,691,913
Ensembl chrNW_004955442:13,559,496...13,692,004 		JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 ISO RGD PMID:31442273 RGD:150540302 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643 		JBrowse link
G Ddx3x DEAD-box helicase 3 X-linked involved_in ISO (PMID:31575075) UniProt PMID:31575075 NCBI chrNW_004955565:1,387,043...1,403,624
Ensembl chrNW_004955565:1,386,973...1,404,220 		JBrowse link
G Eif5a eukaryotic translation initiation factor 5A involved_in ISO (PMID:8596953), (PMID:9465063) UniProt PMID:8596953 PMID:9465063 NCBI chrNW_004955467:9,603,800...9,608,490 JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:25741008) MGI PMID:25741008 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100 		JBrowse link
G Flt3 fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO (PMID:20457904) MGI PMID:20457904 NCBI chrNW_004955497:7,357,533...7,441,215
Ensembl chrNW_004955497:7,357,212...7,461,439 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 involved_in ISO (PMID:24514761) UniProt PMID:24514761 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360 		JBrowse link
G Gli2 GLI family zinc finger 2 involved_in ISO (PMID:9557682) UniProt PMID:9557682 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499 		JBrowse link
G Gsdme gasdermin E involved_in ISO (PMID:28045099)
(MGI:5901785|PMID:28045099)		 UniProt PMID:28045099 MGI:5901785 NCBI chrNW_004955410:26,700,977...26,761,683
Ensembl chrNW_004955410:26,701,893...26,769,989 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISO (PMID:25609812) UniProt PMID:25609812 NCBI chrNW_004955538:1,469,544...1,475,010
Ensembl chrNW_004955538:1,469,544...1,475,019 		JBrowse link
G Ifnb1 interferon beta 1 involved_in ISO (MGI:5645191|PMID:24882218) UniProt
RGD		 PMID:15661832 PMID:24882218 MGI:5645191 RGD:5128798 NCBI chrNW_004955434:23,301,623...23,302,304 JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in ISO (MGI:5645191|PMID:24882218) UniProt PMID:24882218 MGI:5645191 NCBI chrNW_004955406:42,056,014...42,077,701
Ensembl chrNW_004955406:42,056,014...42,077,701 		JBrowse link
G Il10 interleukin 10 ISO porcine reproductive and respiratory syndrome virus RGD PMID:31442273 RGD:150540302 NCBI chrNW_004955406:42,307,789...42,312,255
Ensembl chrNW_004955406:42,307,664...42,312,779 		JBrowse link
G Il21 interleukin 21 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004955428:18,057,096...18,065,492
Ensembl chrNW_004955428:18,057,096...18,065,492 		JBrowse link
G Il6 interleukin 6 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
G Irf3 interferon regulatory factor 3 involved_in ISO (PMID:25609812)
(PMID:18802055)		 UniProt
MGI		 PMID:18802055 PMID:25609812 NCBI chrNW_004955559:1,223,986...1,228,671
Ensembl chrNW_004955559:1,224,874...1,228,624 		JBrowse link
G Lgals8 galectin 8 involved_in ISO (PMID:28077878) UniProt PMID:28077878 NCBI chrNW_004955492:3,673,233...3,693,777
Ensembl chrNW_004955492:3,673,233...3,693,776 		JBrowse link
G Lgals9 galectin 9 involved_in ISO (MGI:5491117|PMID:23408620) UniProt PMID:23408620 MGI:5491117 NCBI chrNW_004955481:5,234,125...5,249,564 JBrowse link
G Mmp12 matrix metallopeptidase 12 involved_in ISO (MGI:5583923|PMID:24784232) CAFA PMID:24784232 MGI:5583923 NCBI chrNW_004955412:6,045,146...6,057,112
Ensembl chrNW_004955412:6,045,100...6,057,262 		JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 involved_in ISO (PMID:18802055) MGI PMID:18802055 NCBI chrNW_004955496:5,842,734...5,950,995
Ensembl chrNW_004955496:5,842,600...5,927,885 		JBrowse link
G Nlrp3 NLR family pyrin domain containing 3 involved_in ISO (PMID:33231615) UniProt PMID:33231615 NCBI chrNW_004955581:597,952...616,903
Ensembl chrNW_004955581:597,667...617,410 		JBrowse link
G Penk proenkephalin ISO RGD PMID:8411369 RGD:10003023 NCBI chrNW_004955454:15,425,712...15,426,685
Ensembl chrNW_004955454:15,426,017...15,426,685 		JBrowse link
G Pou2af1 POU class 2 homeobox associating factor 1 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004955412:13,131,229...13,167,150
Ensembl chrNW_004955412:13,131,168...13,156,128 		JBrowse link
G Pou2f2 POU class 2 homeobox 2 involved_in ISO (MGI:5450752|PMID:23045607) UniProt PMID:23045607 MGI:5450752 NCBI chrNW_004955555:759,308...793,500
Ensembl chrNW_004955555:759,308...793,485 		JBrowse link
G Psmb9 proteasome 20S subunit beta 9 ISO RGD PMID:9001385 RGD:9850285 NCBI chrNW_004955437:1,513,425...1,516,164
Ensembl chrNW_004955437:1,513,418...1,516,164 		JBrowse link
G Riok3 RIO kinase 3 involved_in ISO (PMID:24807708) UniProt PMID:24807708 NCBI chrNW_004955402:11,649,160...11,670,010
Ensembl chrNW_004955402:11,648,849...11,672,545 		JBrowse link
G Rrp1b ribosomal RNA processing 1B involved_in ISO (PMID:26311876) UniProt PMID:26311876 NCBI chrNW_004955407:38,553,866...38,577,547
Ensembl chrNW_004955407:38,553,814...38,577,465 		JBrowse link
G Smad3 SMAD family member 3 involved_in ISO (PMID:18802055) MGI PMID:18802055 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136 		JBrowse link
G Tgfb1 transforming growth factor beta 1 involved_in ISO (PMID:18802055) MGI PMID:18802055 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441 		JBrowse link
G Tlr3 toll like receptor 3 involved_in ISO (PMID:18802055) MGI PMID:18802055 NCBI chrNW_004955403:22,977,882...23,001,392
Ensembl chrNW_004955403:22,979,120...23,001,467 		JBrowse link
G Tlr7 toll like receptor 7 involved_in ISO (PMID:18802055) MGI PMID:18802055 NCBI chrNW_004955544:424,897...443,562
Ensembl chrNW_004955544:424,850...443,564 		JBrowse link
G Tomm70 translocase of outer mitochondrial membrane 70 involved_in ISO (PMID:25609812) UniProt PMID:25609812 NCBI chrNW_004955427:1,874,277...1,908,245
Ensembl chrNW_004955427:1,876,222...1,908,737 		JBrowse link
G Trim6 tripartite motif containing 6 involved_in ISO (MGI:5645191|PMID:24882218) UniProt PMID:24882218 MGI:5645191 NCBI chrNW_004955414:21,495,593...21,513,703
Ensembl chrNW_004955414:21,481,129...21,514,548 		JBrowse link
G Wdfy4 WDFY family member 4 acts_upstream_of_or_within ISO (PMID:30409884) MGI PMID:30409884 NCBI chrNW_004955556:1,178,970...1,421,139
Ensembl chrNW_004955556:1,177,117...1,421,228 		JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:23355615) UniProt PMID:23355615 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959 		JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 ISO RGD PMID:20226086 RGD:13673889 NCBI chrNW_004955494:3,925,478...3,985,469
Ensembl chrNW_004955494:3,926,413...3,983,736 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12362
    biological process involved in interspecies interaction between organisms 1328
      response to other organism 1243
        response to virus 293
          cellular response to virus 41
            phage shock 0
            suppression by virus of host cell lysis in response to superinfection 0
Path 2
Term Annotations click to browse term
  biological_process 12362
    response to stimulus 6684
      response to external stimulus 2006
        response to external biotic stimulus 1246
          response to other organism 1243
            response to virus 293
              cellular response to virus 41
                phage shock 0
                suppression by virus of host cell lysis in response to superinfection 0
paths to the root