Trim6 (tripartite motif containing 6)

Gene: Trim6 (tripartite motif containing 6) Chinchilla lanigera

Analyze

Symbol:

Trim6

Name:

tripartite motif containing 6

RGD ID:

8845562

Description:

ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-beta (ortholog); cellular response to virus (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tripartite motif-containing protein 6

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	21,481,129 - 21,514,548 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	21,495,593 - 21,513,703 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

antiviral innate immune response (ISO)

cellular response to interferon-beta (ISO)

cellular response to virus (ISO)

free ubiquitin chain polymerization (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of gene expression (ISO)

negative regulation of stem cell differentiation (ISO)

negative regulation of viral genome replication (ISO)

positive regulation of cytokine production involved in immune response (ISO)

positive regulation of defense response to virus by host (ISO)

positive regulation of gene expression (ISO)

positive regulation of peptidyl-serine phosphorylation (ISO)

positive regulation of peptidyl-threonine phosphorylation (ISO)

positive regulation of type I interferon-mediated signaling pathway (ISO)

protein K48-linked ubiquitination (ISO)

protein polyubiquitination (ISO)

regulation of non-canonical NF-kappaB signal transduction (ISO)

regulation of protein stability (ISO)

response to lipopolysaccharide (ISO)

Cellular Component

cytoplasm (ISO)

cytosol (ISO)

nucleus (ISO)

Molecular Function

DNA-binding transcription factor binding (ISO)

identical protein binding (ISO)

protein binding (ISO)

protein kinase binding (ISO)

protein tyrosine kinase binding (ISO)

protein-macromolecule adaptor activity (ISO)

ubiquitin protein ligase activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Trim6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	21,481,129 - 21,514,548 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	21,495,593 - 21,513,703 (+)	NCBI	ChiLan1.0	ChiLan1.0

TRIM6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	5,596,111 - 5,612,952 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	5,596,109 - 5,612,958 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	5,617,341 - 5,634,182 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	5,573,923 - 5,590,764 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	5,573,922 - 5,590,764	NCBI
Celera	11	5,735,961 - 5,753,014 (+)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	5,275,183 - 5,292,762 (+)	NCBI		HuRef
CHM1_1	11	5,616,290 - 5,633,137 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	5,655,518 - 5,672,393 (+)	NCBI		T2T-CHM13v2.0

Trim6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	103,868,002 - 103,884,359 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	103,868,000 - 103,884,359 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	104,218,795 - 104,235,152 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	104,218,793 - 104,235,152 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	111,367,309 - 111,383,666 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	94,018,892 - 94,035,354 (+)	NCBI		MGSCv36	mm8
MGSCv36	7	104,092,637 - 104,108,973 (+)	NCBI		MGSCv36	mm8
Celera	7	104,604,665 - 104,619,682 (+)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	55.55	NCBI

Trim6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	168,095,619 - 168,108,809 (+)	NCBI		GRCr8
mRatBN7.2	1	158,683,746 - 158,696,936 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	158,683,746 - 158,696,914 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	166,671,350 - 166,684,551 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	173,851,364 - 173,864,566 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	166,744,204 - 166,757,392 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	169,410,084 - 169,423,305 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	169,410,115 - 169,423,283 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	175,550,133 - 175,563,346 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	162,059,220 - 162,094,672 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	162,180,654 - 162,187,805 (+)	NCBI
Celera	1	156,680,750 - 156,687,600 (+)	NCBI		Celera
Cytogenetic Map	1	q32	NCBI

TRIM6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	8,034,820 - 8,052,099 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	7,992,489 - 8,009,781 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	5,731,256 - 5,748,057 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	5,412,952 - 5,460,537 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	5,413,491 - 5,460,532 (+)	Ensembl	panpan1.1		panPan2

TRIM6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	28,595,887 - 28,611,562 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	28,595,448 - 28,611,124 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	28,383,550 - 28,390,775 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	29,419,425 - 29,434,660 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	29,419,208 - 29,434,659 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	28,735,956 - 28,743,169 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	28,941,372 - 28,948,584 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	29,076,932 - 29,084,154 (+)	NCBI		UU_Cfam_GSD_1.0

Trim6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	57,485,230 - 57,493,226 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004937097	24,911 - 31,681 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004937097	23,695 - 31,673 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LOC100622028
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	4,196,921 - 4,218,415 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	4,197,922 - 4,204,688 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	4,681,682 - 4,696,722 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TRIM6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	61,136,690 - 61,147,911 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666043	64,854,397 - 64,870,606 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Trim6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624817	7,045,228 - 7,053,525 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624817	7,029,104 - 7,053,447 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005380095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013511999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01015422	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01054312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000024059 ⟹ ENSCLAP00000023833

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955414	21,481,129 - 21,514,548 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000024060 ⟹ ENSCLAP00000023834

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955414	21,495,124 - 21,514,548 (+)	Ensembl

RefSeq Acc Id:

ENSCLAT00000024061 ⟹ ENSCLAP00000023835

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955414	21,500,860 - 21,514,548 (+)	Ensembl

RefSeq Acc Id:

XM_005380095 ⟹ XP_005380152

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	21,495,593 - 21,513,703 (+)	NCBI

Sequence:

show sequence

GGAGTTGGTGCAAGACCTGGGCCTTCACTTTCTCAATGAAAGTGACCTATGTACGTTACGTACG
AGCACTTTCTCTAGCGGGTTTTATCCCCCGCTCCTTTGTTTCTAACTACCTGTAGTTAAGCAAA
AAAAGACCTCAACAGTTGGCTGGTGTTGGGGAGAAAAGTGTATTGAATTTTGCTGAAGTGTGAC
CCAAGCTTAGGCGGCCGGCCTGGAAAAGGTGATCTCGGCCCAAGAAGTGGCTGTAAAAGGCGCC
TGTCCAGCAGGGCCCGAAACGGGAAGCTAAATGCAATGGAAGAAGCAGCACGGAAACCTGGATT
AAAAATCCACCATCGGGTGACTGCTTAGTGACCAACAGGGAACCCACATTTCCTCTTTCTGCTC
CAGGAGGTTTTTGATTTGATTAAGCCCTCTGAGGGAGCACTGCCCCTCTGAAAATGACAAGGAA
GACATTTTTGAGTTACTGACATTCTAAAGTAACCTCTAAGAAAAACATGGAAAAGCATTATAAT
CAGCCTACATCCCTGAATTCCAGAAGTAACTTTTGTGTGCATAAAACAAAAGTTCGGTGATACC
TGAACTCACACTCCGTGCAGATGCTTTTTTATGGCACCGCCTGCCTTCTCACTTGAAGTTTCAT
AAATTGGCACATGGGACCCCTACTGCACTGCCAACATTGAGCCCAGCTATAATATCAGCAGGAC
CGAATATGCGTACGTTTATGCGGAGTTGTCCTATGAGGGATAAAGAAAACATGAGAACGCGCCT
GTGATCCCACCCTCTGCAAGGTTGAGATAGGAGGAGTACAGGTTTGAGCCCAGCCTGGGCAACT
TGGTGAGCAGGAGGAATTCCAGGGCTGTATGGAACAGAGGCGGGCAGGTCCTCACCACCAACAT
CTTTGCCTTTGGAGATAAGACACCAGCGAATGATAGCAAAGAGGCTTCCATAAGCAGAACCATC
TTAGAAGTCCGGGCCGAGTAGGAGAGCAGCTACAATGACTTCAAGAGTTCTAGTGGACATCCGA
GAGGAGGTGACCTGCCCCATCTGCCTGGAGCTCCTGACAGAACCTTTGAGCATAGACTGTGGCC
ACAGCTTCTGCCAAGCCTGCATCACAGAGAACAGTGAGAAATCAGGGCGCCACCAAGAACAAGA
GAGCAGCTGTCCTGTGTGCCAGACCCGTTACCACCCCCGGAGCCTCCGGCCTAACCGGCACCTG
GCCAACATAGCAGAGAGGCTGAGAGAGGTTGTGTTGGGACCTGGAGAGCAACCAAGGGTCGTTC
TTTGTGCATACCATGGAGAGAAACTCCAGCTCTTCTGTAAGGAGGACGGGAAGCTCATTTGCTG
GCTTTGTGAGCGTTCTCAGGAGCACCACGGTCACCACACGTTCCTCATGGCGGAGGTAGCCCCA
GAGTACCAGGAAATGTTCCAGGAGTCCCTGAAGAAGTTGAAGAAAGAAGAGGAGGAAGCTGAGA
GACTAAAAGCTGCTATCAGGGAGAAGAGGGCATCCTGGAAGAATCAGATGGAGCCTGAGAGACA
CAGGATCCAGAAAGAGTTTAATCAGCTGCGAAGCATCCTGGACAAAGAGGAGCAGCGGGAACTG
AGGAAGCTGGAGGAGAAAGAGAGGAAGGGGCTGAGCATTCTAGAGAAAGCTGAGGGTGAAGTGA
TCCGCCAGAGCCAGTCCCTCAGAGAGCTCATCTCAGACCTGGAGTTCCGGTGCCAGGGGTCCAC
TGTAGATCTGCTGCAGGATGTGAATGATCTCACCCAAAGGAGTGAGTTCTGGGCCCTGAGGAAG
CCGCAAGTGCTCCCCACCAAGCTGAGAAGTGCCTTTCGAGCCCCAGATCTGAAAAAGATGCTGC
AAGTGTTTCGAGAGCTCACCGACGTCCAGAGCTACTGGGTGGACGTGACCATGAATCCACACTC
TGCTAATTTAAATCTTGTGCTGTCTAAAAACCGGAGACAGGTGAGATTCGTGGGTGCTAAGCTG
ACCGGACCGTCCCGTCTGGAAGAACATTATGACTGTAGCATCCTGGGCTCTCAGCACTTCTCCT
CAGGAAAATACTACTGGGAGGTGGACGTGACGAAGAAGACTGCCTGGATCCTGGGAGTGTGCAG
CAATTCCACAGGGCCTCCGTTTGCTTGCAGCCGCTATCCTAACAGTCAGAACACTTACTCCAGG
TACCAGCCACAGACCGGATACTGGGTGATCGGCTTACAGCACAAACGTGAATACAGAGCTTACG
AGGACTCCTCCACCTCCCTGCTGCTCTCCATGACCGTGCCCCCCCGCCGCATTGGGGTTTACTT
GGACTATGAGGCTGGCACGGTGTCTTTTTATAATGTCACGAACCATGGCTTGCCCATCTACACT
TTCTCCAAGTACTATTTCCCCACAGCCCTTTGTCCATACTTCAATCCTTGCGACTGCGTGGTCC
CAATGACCCTGAGGCGCCCAGGACCTTGAACTTTCTGTACCCACACCCACTGCAGACTGGTGCC
CTCCCCCTGGGGCTCGTGAGCCAGCCGCCTCGCTCATCTCTGTTTTCTGAGTTCTCGCCCCTTT
TCTTTGCAACTCACTGAAGCACCCAGCCATGATCTTGAGCATCACTGACATCATGTGAAGGTGG
GCTTGGGGAAGTTCGGGCATTTCACCCTTGGTGCAGGGAGTGAAATGTAACAAATTCTCTTCGA
TTGCTTCGCTGAGTTTTGTACTAAATGAGACATTGAATTCAACAGAATTCATTCTACAGTTTTT
GAGAGATAATCATTTGTCGTTTTTATTGTTTCAAGTACATTGGTTTGTTTTAATTGTTAAACCT
ACCACAATGCCCTGATATGTTTATTTTTTACATGCAAAGGTAGATTTATTTTTGATAACACATT
GTTTACTATTTGTTTTCATTTGTGTGTGCAAAAGAAGTTGACCTACGATTTTATGTATCTTTAT
CAGGTTTTATAAAAGTGTAATAATGAGCAAAGGAAATTACTGGGTAAATAAATATAAGATTGGC
TGCTAAAA

hide sequence

RefSeq Acc Id:

XM_013511994 ⟹ XP_013367448

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	21,500,861 - 21,513,703 (+)	NCBI

Sequence:

show sequence

CTTTGGTGGTGGAGGTGGAGCAGCTGCCGCAAGGCTGCAGCAAGGCTGCAAATCCTCTGCTCTG
ATCCAGGCCTCGGTTCCAGTTTCATAAATTGGCACATGGGACCCCTACTGCACTGCCAACATTG
AGCCCAGCTATAATATCAGCAGGACCGAATATGCGTACGTTTATGCGGAGTTGTCCTATGAGGG
ATAAAGAAAACATGAGAACGCGCCTGTGATCCCACCCTCTGCAAGGTTGAGATAGGAGGAGTAC
AGGTTTGAGCCCAGCCTGGGCAACTTGGTGAGCAGGAGGAATTCCAGGGCTGTATGGAACAGAG
GCGGGCAGGTCCTCACCACCAACATCTTTGCCTTTGGAGATAAGACACCAGCGAATGATAGCAA
AGAGGCTTCCATAAGCAGAACCATCTTAGAAGTCCGGGCCGAGTAGGAGAGCAGCTACAATGAC
TTCAAGAGTTCTAGTGGACATCCGAGAGGAGGTGACCTGCCCCATCTGCCTGGAGCTCCTGACA
GAACCTTTGAGCATAGACTGTGGCCACAGCTTCTGCCAAGCCTGCATCACAGAGAACAGTGAGA
AATCAGGGCGCCACCAAGAACAAGAGAGCAGCTGTCCTGTGTGCCAGACCCGTTACCACCCCCG
GAGCCTCCGGCCTAACCGGCACCTGGCCAACATAGCAGAGAGGCTGAGAGAGGTTGTGTTGGGA
CCTGGAGAGCAACCAAGGGTCGTTCTTTGTGCATACCATGGAGAGAAACTCCAGCTCTTCTGTA
AGGAGGACGGGAAGCTCATTTGCTGGCTTTGTGAGCGTTCTCAGGAGCACCACGGTCACCACAC
GTTCCTCATGGCGGAGGTAGCCCCAGAGTACCAGGAAATGTTCCAGGAGTCCCTGAAGAAGTTG
AAGAAAGAAGAGGAGGAAGCTGAGAGACTAAAAGCTGCTATCAGGGAGAAGAGGGCATCCTGGA
AGAATCAGATGGAGCCTGAGAGACACAGGATCCAGAAAGAGTTTAATCAGCTGCGAAGCATCCT
GGACAAAGAGGAGCAGCGGGAACTGAGGAAGCTGGAGGAGAAAGAGAGGAAGGGGCTGAGCATT
CTAGAGAAAGCTGAGGGTGAAGTGATCCGCCAGAGCCAGTCCCTCAGAGAGCTCATCTCAGACC
TGGAGTTCCGGTGCCAGGGGTCCACTGTAGATCTGCTGCAGGATGTGAATGATCTCACCCAAAG
GAGTGAGTTCTGGGCCCTGAGGAAGCCGCAAGTGCTCCCCACCAAGCTGAGAAGTGCCTTTCGA
GCCCCAGATCTGAAAAAGATGCTGCAAGTGTTTCGAGAGCTCACCGACGTCCAGAGCTACTGGG
TGGACGTGACCATGAATCCACACTCTGCTAATTTAAATCTTGTGCTGTCTAAAAACCGGAGACA
GGTGAGATTCGTGGGTGCTAAGCTGACCGGACCGTCCCGTCTGGAAGAACATTATGACTGTAGC
ATCCTGGGCTCTCAGCACTTCTCCTCAGGAAAATACTACTGGGAGGTGGACGTGACGAAGAAGA
CTGCCTGGATCCTGGGAGTGTGCAGCAATTCCACAGGGCCTCCGTTTGCTTGCAGCCGCTATCC
TAACAGTCAGAACACTTACTCCAGGTACCAGCCACAGACCGGATACTGGGTGATCGGCTTACAG
CACAAACGTGAATACAGAGCTTACGAGGACTCCTCCACCTCCCTGCTGCTCTCCATGACCGTGC
CCCCCCGCCGCATTGGGGTTTACTTGGACTATGAGGCTGGCACGGTGTCTTTTTATAATGTCAC
GAACCATGGCTTGCCCATCTACACTTTCTCCAAGTACTATTTCCCCACAGCCCTTTGTCCATAC
TTCAATCCTTGCGACTGCGTGGTCCCAATGACCCTGAGGCGCCCAGGACCTTGAACTTTCTGTA
CCCACACCCACTGCAGACTGGTGCCCTCCCCCTGGGGCTCGTGAGCCAGCCGCCTCGCTCATCT
CTGTTTTCTGAGTTCTCGCCCCTTTTCTTTGCAACTCACTGAAGCACCCAGCCATGATCTTGAG
CATCACTGACATCATGTGAAGGTGGGCTTGGGGAAGTTCGGGCATTTCACCCTTGGTGCAGGGA
GTGAAATGTAACAAATTCTCTTCGATTGCTTCGCTGAGTTTTGTACTAAATGAGACATTGAATT
CAACAGAATTCATTCTACAGTTTTTGAGAGATAATCATTTGTCGTTTTTATTGTTTCAAGTACA
TTGGTTTGTTTTAATTGTTAAACCTACCACAATGCCCTGATATGTTTATTTTTTACATGCAAAG
GTAGATTTATTTTTGATAACACATTGTTTACTATTTGTTTTCATTTGTGTGTGCAAAAGAAGTT
GACCTACGATTTTATGTATCTTTATCAGGTTTTATAAAAGTGTAATAATGAGCAAAGGAAATTA
CTGGGTAAATAAATATAAGATTGGCTGCTAAAA

hide sequence

RefSeq Acc Id:

XM_013511995 ⟹ XP_013367449

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	21,506,588 - 21,513,703 (+)	NCBI

Sequence:

show sequence

GATTTCAAATAATGGTAATATTAAAGTCAGTCATTGTCTCTGTCTCCTTATTGAGGGACCGAAT
ATGCGTACGTTTATGCGGAGTTGTCCTATGAGGGATAAAGAAAACATGAGAACGCGCCTGTGAT
CCCACCCTCTGCAAGGTTGAGATAGGAGGAGTACAGGTTTGAGCCCAGCCTGGGCAACTTGGTG
AGCAGGAGGAATTCCAGGGCTGTATGGAACAGAGGCGGGCAGGTCCTCACCACCAACATCTTTG
CCTTTGGAGATAAGACACCAGCGAATGATAGCAAAGAGGCTTCCATAAGCAGAACCATCTTAGA
AGTCCGGGCCGAGTAGGAGAGCAGCTACAATGACTTCAAGAGTTCTAGTGGACATCCGAGAGGA
GGTGACCTGCCCCATCTGCCTGGAGCTCCTGACAGAACCTTTGAGCATAGACTGTGGCCACAGC
TTCTGCCAAGCCTGCATCACAGAGAACAGTGAGAAATCAGGGCGCCACCAAGAACAAGAGAGCA
GCTGTCCTGTGTGCCAGACCCGTTACCACCCCCGGAGCCTCCGGCCTAACCGGCACCTGGCCAA
CATAGCAGAGAGGCTGAGAGAGGTTGTGTTGGGACCTGGAGAGCAACCAAGGGTCGTTCTTTGT
GCATACCATGGAGAGAAACTCCAGCTCTTCTGTAAGGAGGACGGGAAGCTCATTTGCTGGCTTT
GTGAGCGTTCTCAGGAGCACCACGGTCACCACACGTTCCTCATGGCGGAGGTAGCCCCAGAGTA
CCAGGAAATGTTCCAGGAGTCCCTGAAGAAGTTGAAGAAAGAAGAGGAGGAAGCTGAGAGACTA
AAAGCTGCTATCAGGGAGAAGAGGGCATCCTGGAAGAATCAGATGGAGCCTGAGAGACACAGGA
TCCAGAAAGAGTTTAATCAGCTGCGAAGCATCCTGGACAAAGAGGAGCAGCGGGAACTGAGGAA
GCTGGAGGAGAAAGAGAGGAAGGGGCTGAGCATTCTAGAGAAAGCTGAGGGTGAAGTGATCCGC
CAGAGCCAGTCCCTCAGAGAGCTCATCTCAGACCTGGAGTTCCGGTGCCAGGGGTCCACTGTAG
ATCTGCTGCAGGATGTGAATGATCTCACCCAAAGGAGTGAGTTCTGGGCCCTGAGGAAGCCGCA
AGTGCTCCCCACCAAGCTGAGAAGTGCCTTTCGAGCCCCAGATCTGAAAAAGATGCTGCAAGTG
TTTCGAGAGCTCACCGACGTCCAGAGCTACTGGGTGGACGTGACCATGAATCCACACTCTGCTA
ATTTAAATCTTGTGCTGTCTAAAAACCGGAGACAGGTGAGATTCGTGGGTGCTAAGCTGACCGG
ACCGTCCCGTCTGGAAGAACATTATGACTGTAGCATCCTGGGCTCTCAGCACTTCTCCTCAGGA
AAATACTACTGGGAGGTGGACGTGACGAAGAAGACTGCCTGGATCCTGGGAGTGTGCAGCAATT
CCACAGGGCCTCCGTTTGCTTGCAGCCGCTATCCTAACAGTCAGAACACTTACTCCAGGTACCA
GCCACAGACCGGATACTGGGTGATCGGCTTACAGCACAAACGTGAATACAGAGCTTACGAGGAC
TCCTCCACCTCCCTGCTGCTCTCCATGACCGTGCCCCCCCGCCGCATTGGGGTTTACTTGGACT
ATGAGGCTGGCACGGTGTCTTTTTATAATGTCACGAACCATGGCTTGCCCATCTACACTTTCTC
CAAGTACTATTTCCCCACAGCCCTTTGTCCATACTTCAATCCTTGCGACTGCGTGGTCCCAATG
ACCCTGAGGCGCCCAGGACCTTGAACTTTCTGTACCCACACCCACTGCAGACTGGTGCCCTCCC
CCTGGGGCTCGTGAGCCAGCCGCCTCGCTCATCTCTGTTTTCTGAGTTCTCGCCCCTTTTCTTT
GCAACTCACTGAAGCACCCAGCCATGATCTTGAGCATCACTGACATCATGTGAAGGTGGGCTTG
GGGAAGTTCGGGCATTTCACCCTTGGTGCAGGGAGTGAAATGTAACAAATTCTCTTCGATTGCT
TCGCTGAGTTTTGTACTAAATGAGACATTGAATTCAACAGAATTCATTCTACAGTTTTTGAGAG
ATAATCATTTGTCGTTTTTATTGTTTCAAGTACATTGGTTTGTTTTAATTGTTAAACCTACCAC
AATGCCCTGATATGTTTATTTTTTACATGCAAAGGTAGATTTATTTTTGATAACACATTGTTTA
CTATTTGTTTTCATTTGTGTGTGCAAAAGAAGTTGACCTACGATTTTATGTATCTTTATCAGGT
TTTATAAAAGTGTAATAATGAGCAAAGGAAATTACTGGGTAAATAAATATAAGATTGGCTGCTA
AAA

hide sequence

RefSeq Acc Id:

XM_013511997 ⟹ XP_013367451

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	21,495,593 - 21,513,703 (+)	NCBI

Sequence:

show sequence

GGAGTTGGTGCAAGACCTGGGCCTTCACTTTCTCAATGAAAGTGACCTATGTACGTTACGTACG
AGCACTTTCTCTAGCGGGTTTTATCCCCCGCTCCTTTGTTTCTAACTACCTGTAGTTAAGCAAA
AAAAGACCTCAACAGTTGGCTGGTGTTGGGGAGAAAAGTGTATTGAATTTTGCTGAAGTGTGAC
CCAAGCTTAGGCGGCCGGCCTGGAAAAGGTGATCTCGGCCCAAGAAGTGGCTGTAAAAGGCGCC
TGTCCAGCAGGGCCCGAAACGGGAAGCTAAATGCAATGGAAGAAGCAGCACGGAAACCTGGATT
AAAAATCCACCATCGGGTGACTGCTTAGTGACCAACAGGGAACCCACATTTCCTCTTTCTGCTC
CAGGAGGCTTCCATAAGCAGAACCATCTTAGAAGTCCGGGCCGAGTAGGAGAGCAGCTACAATG
ACTTCAAGAGTTCTAGTGGACATCCGAGAGGAGGTGACCTGCCCCATCTGCCTGGAGCTCCTGA
CAGAACCTTTGAGCATAGACTGTGGCCACAGCTTCTGCCAAGCCTGCATCACAGAGAACAGTGA
GAAATCAGGGCGCCACCAAGAACAAGAGAGCAGCTGTCCTGTGTGCCAGACCCGTTACCACCCC
CGGAGCCTCCGGCCTAACCGGCACCTGGCCAACATAGCAGAGAGGCTGAGAGAGGTTGTGTTGG
GACCTGGAGAGCAACCAAGGGTCGTTCTTTGTGCATACCATGGAGAGAAACTCCAGCTCTTCTG
TAAGGAGGACGGGAAGCTCATTTGCTGGCTTTGTGAGCGTTCTCAGGAGCACCACGGTCACCAC
ACGTTCCTCATGGCGGAGGTAGCCCCAGAGTACCAGGAAATGTTCCAGGAGTCCCTGAAGAAGT
TGAAGAAAGAAGAGGAGGAAGCTGAGAGACTAAAAGCTGCTATCAGGGAGAAGAGGGCATCCTG
GAAGAATCAGATGGAGCCTGAGAGACACAGGATCCAGAAAGAGTTTAATCAGCTGCGAAGCATC
CTGGACAAAGAGGAGCAGCGGGAACTGAGGAAGCTGGAGGAGAAAGAGAGGAAGGGGCTGAGCA
TTCTAGAGAAAGCTGAGGGTGAAGTGATCCGCCAGAGCCAGTCCCTCAGAGAGCTCATCTCAGA
CCTGGAGTTCCGGTGCCAGGGGTCCACTGTAGATCTGCTGCAGGATGTGAATGATCTCACCCAA
AGGAGTGAGTTCTGGGCCCTGAGGAAGCCGCAAGTGCTCCCCACCAAGCTGAGAAGTGCCTTTC
GAGCCCCAGATCTGAAAAAGATGCTGCAAGTGTTTCGAGAGCTCACCGACGTCCAGAGCTACTG
GGTGGACGTGACCATGAATCCACACTCTGCTAATTTAAATCTTGTGCTGTCTAAAAACCGGAGA
CAGGTGAGATTCGTGGGTGCTAAGCTGACCGGACCGTCCCGTCTGGAAGAACATTATGACTGTA
GCATCCTGGGCTCTCAGCACTTCTCCTCAGGAAAATACTACTGGGAGGTGGACGTGACGAAGAA
GACTGCCTGGATCCTGGGAGTGTGCAGCAATTCCACAGGGCCTCCGTTTGCTTGCAGCCGCTAT
CCTAACAGTCAGAACACTTACTCCAGGTACCAGCCACAGACCGGATACTGGGTGATCGGCTTAC
AGCACAAACGTGAATACAGAGCTTACGAGGACTCCTCCACCTCCCTGCTGCTCTCCATGACCGT
GCCCCCCCGCCGCATTGGGGTTTACTTGGACTATGAGGCTGGCACGGTGTCTTTTTATAATGTC
ACGAACCATGGCTTGCCCATCTACACTTTCTCCAAGTACTATTTCCCCACAGCCCTTTGTCCAT
ACTTCAATCCTTGCGACTGCGTGGTCCCAATGACCCTGAGGCGCCCAGGACCTTGAACTTTCTG
TACCCACACCCACTGCAGACTGGTGCCCTCCCCCTGGGGCTCGTGAGCCAGCCGCCTCGCTCAT
CTCTGTTTTCTGAGTTCTCGCCCCTTTTCTTTGCAACTCACTGAAGCACCCAGCCATGATCTTG
AGCATCACTGACATCATGTGAAGGTGGGCTTGGGGAAGTTCGGGCATTTCACCCTTGGTGCAGG
GAGTGAAATGTAACAAATTCTCTTCGATTGCTTCGCTGAGTTTTGTACTAAATGAGACATTGAA
TTCAACAGAATTCATTCTACAGTTTTTGAGAGATAATCATTTGTCGTTTTTATTGTTTCAAGTA
CATTGGTTTGTTTTAATTGTTAAACCTACCACAATGCCCTGATATGTTTATTTTTTACATGCAA
AGGTAGATTTATTTTTGATAACACATTGTTTACTATTTGTTTTCATTTGTGTGTGCAAAAGAAG
TTGACCTACGATTTTATGTATCTTTATCAGGTTTTATAAAAGTGTAATAATGAGCAAAGGAAAT
TACTGGGTAAATAAATATAAGATTGGCTGCTAAAA

hide sequence

RefSeq Acc Id:

XM_013511998 ⟹ XP_013367452

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	21,500,860 - 21,513,703 (+)	NCBI

Sequence:

show sequence

GCTTTGGTGGTGGAGGTGGAGCAGCTGCCGCAAGGCTGCAGCAAGGCTGCAAATCCTCTGCTCT
GATCCAGGCCTCGGTTCCAGGCTTCCATAAGCAGAACCATCTTAGAAGTCCGGGCCGAGTAGGA
GAGCAGCTACAATGACTTCAAGAGTTCTAGTGGACATCCGAGAGGAGGTGACCTGCCCCATCTG
CCTGGAGCTCCTGACAGAACCTTTGAGCATAGACTGTGGCCACAGCTTCTGCCAAGCCTGCATC
ACAGAGAACAGTGAGAAATCAGGGCGCCACCAAGAACAAGAGAGCAGCTGTCCTGTGTGCCAGA
CCCGTTACCACCCCCGGAGCCTCCGGCCTAACCGGCACCTGGCCAACATAGCAGAGAGGCTGAG
AGAGGTTGTGTTGGGACCTGGAGAGCAACCAAGGGTCGTTCTTTGTGCATACCATGGAGAGAAA
CTCCAGCTCTTCTGTAAGGAGGACGGGAAGCTCATTTGCTGGCTTTGTGAGCGTTCTCAGGAGC
ACCACGGTCACCACACGTTCCTCATGGCGGAGGTAGCCCCAGAGTACCAGGAAATGTTCCAGGA
GTCCCTGAAGAAGTTGAAGAAAGAAGAGGAGGAAGCTGAGAGACTAAAAGCTGCTATCAGGGAG
AAGAGGGCATCCTGGAAGAATCAGATGGAGCCTGAGAGACACAGGATCCAGAAAGAGTTTAATC
AGCTGCGAAGCATCCTGGACAAAGAGGAGCAGCGGGAACTGAGGAAGCTGGAGGAGAAAGAGAG
GAAGGGGCTGAGCATTCTAGAGAAAGCTGAGGGTGAAGTGATCCGCCAGAGCCAGTCCCTCAGA
GAGCTCATCTCAGACCTGGAGTTCCGGTGCCAGGGGTCCACTGTAGATCTGCTGCAGGATGTGA
ATGATCTCACCCAAAGGAGTGAGTTCTGGGCCCTGAGGAAGCCGCAAGTGCTCCCCACCAAGCT
GAGAAGTGCCTTTCGAGCCCCAGATCTGAAAAAGATGCTGCAAGTGTTTCGAGAGCTCACCGAC
GTCCAGAGCTACTGGGTGGACGTGACCATGAATCCACACTCTGCTAATTTAAATCTTGTGCTGT
CTAAAAACCGGAGACAGGTGAGATTCGTGGGTGCTAAGCTGACCGGACCGTCCCGTCTGGAAGA
ACATTATGACTGTAGCATCCTGGGCTCTCAGCACTTCTCCTCAGGAAAATACTACTGGGAGGTG
GACGTGACGAAGAAGACTGCCTGGATCCTGGGAGTGTGCAGCAATTCCACAGGGCCTCCGTTTG
CTTGCAGCCGCTATCCTAACAGTCAGAACACTTACTCCAGGTACCAGCCACAGACCGGATACTG
GGTGATCGGCTTACAGCACAAACGTGAATACAGAGCTTACGAGGACTCCTCCACCTCCCTGCTG
CTCTCCATGACCGTGCCCCCCCGCCGCATTGGGGTTTACTTGGACTATGAGGCTGGCACGGTGT
CTTTTTATAATGTCACGAACCATGGCTTGCCCATCTACACTTTCTCCAAGTACTATTTCCCCAC
AGCCCTTTGTCCATACTTCAATCCTTGCGACTGCGTGGTCCCAATGACCCTGAGGCGCCCAGGA
CCTTGAACTTTCTGTACCCACACCCACTGCAGACTGGTGCCCTCCCCCTGGGGCTCGTGAGCCA
GCCGCCTCGCTCATCTCTGTTTTCTGAGTTCTCGCCCCTTTTCTTTGCAACTCACTGAAGCACC
CAGCCATGATCTTGAGCATCACTGACATCATGTGAAGGTGGGCTTGGGGAAGTTCGGGCATTTC
ACCCTTGGTGCAGGGAGTGAAATGTAACAAATTCTCTTCGATTGCTTCGCTGAGTTTTGTACTA
AATGAGACATTGAATTCAACAGAATTCATTCTACAGTTTTTGAGAGATAATCATTTGTCGTTTT
TATTGTTTCAAGTACATTGGTTTGTTTTAATTGTTAAACCTACCACAATGCCCTGATATGTTTA
TTTTTTACATGCAAAGGTAGATTTATTTTTGATAACACATTGTTTACTATTTGTTTTCATTTGT
GTGTGCAAAAGAAGTTGACCTACGATTTTATGTATCTTTATCAGGTTTTATAAAAGTGTAATAA
TGAGCAAAGGAAATTACTGGGTAAATAAATATAAGATTGGCTGCTAAAA

hide sequence

RefSeq Acc Id:

XM_013511999 ⟹ XP_013367453

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955414	21,495,593 - 21,512,762 (+)	NCBI

Sequence:

show sequence

GGAGTTGGTGCAAGACCTGGGCCTTCACTTTCTCAATGAAAGTGACCTATGTACGTTACGTACG
AGCACTTTCTCTAGCGGGTTTTATCCCCCGCTCCTTTGTTTCTAACTACCTGTAGTTAAGCAAA
AAAAGACCTCAACAGTTGGCTGGTGTTGGGGAGAAAAGTGTATTGAATTTTGCTGAAGTGTGAC
CCAAGCTTAGGCGGCCGGCCTGGAAAAGGTGATCTCGGCCCAAGAAGTGGCTGTAAAAGGCGCC
TGTCCAGCAGGGCCCGAAACGGGAAGCTAAATGCAATGGAAGAAGCAGCACGGAAACCTGGATT
AAAAATCCACCATCGGGTGACTGCTTAGTGACCAACAGGGAACCCACATTTCCTCTTTCTGCTC
CAGGAGGTTTTTGATTTGATTAAGCCCTCTGAGGGAGCACTGCCCCTCTGAAAATGACAAGGAA
GACATTTTTGAGTTACTGACATTCTAAAGTAACCTCTAAGAAAAACATGGAAAAGCATTATAAT
CAGCCTACATCCCTGAATTCCAGAAGTAACTTTTGTGTGCATAAAACAAAAGTTCGGTGATACC
TGAACTCACACTCCGTGCAGATGCTTTTTTATGGCACCGCCTGCCTTCTCACTTGAAGTTTCAT
AAATTGGCACATGGGACCCCTACTGCACTGCCAACATTGAGCCCAGCTATAATATCAGCAGGAC
CGAATATGCGTACGTTTATGCGGAGTTGTCCTATGAGGGATAAAGAAAACATGAGAACGCGCCT
GTGATCCCACCCTCTGCAAGGTTGAGATAGGAGGAGTACAGGTTTGAGCCCAGCCTGGGCAACT
TGGTGAGCAGGAGGAATTCCAGGGCTGTATGGAACAGAGGCGGGCAGGTCCTCACCACCAACAT
CTTTGCCTTTGGAGATAAGACACCAGCGAATGATAGCAAAGAGGCTTCCATAAGCAGAACCATC
TTAGAAGTCCGGGCCGAGTAGGAGAGCAGCTACAATGACTTCAAGAGTTCTAGTGGACATCCGA
GAGGAGGTGACCTGCCCCATCTGCCTGGAGCTCCTGACAGAACCTTTGAGCATAGACTGTGGCC
ACAGCTTCTGCCAAGCCTGCATCACAGAGAACAGTGAGAAATCAGGGCGCCACCAAGAACAAGA
GAGCAGCTGTCCTGTGTGCCAGACCCGTTACCACCCCCGGAGCCTCCGGCCTAACCGGCACCTG
GCCAACATAGCAGAGAGGCTGAGAGAGGTTGTGTTGGGACCTGGAGAGCAACCAAGGGTCGTTC
TTTGTGCATACCATGGAGAGAAACTCCAGCTCTTCTGTAAGGAGGACGGGAAGCTCATTTGCTG
GCTTTGTGAGCGTTCTCAGGAGCACCACGGTCACCACACGTTCCTCATGGCGGAGGTAGCCCCA
GAGTACCAGGAAATGTTCCAGGAGTCCCTGAAGAAGTTGAAGAAAGAAGAGGAGGAAGCTGAGA
GACTAAAAGCTGCTATCAGGGAGAAGAGGGCATCCTGGAAGAATCAGATGGAGCCTGAGAGACA
CAGGATCCAGAAAGAGTTTAATCAGCTGCGAAGCATCCTGGACAAAGAGGAGCAGCGGGAACTG
AGGAAGCTGGAGGAGAAAGAGAGGAAGGGGCTGAGCATTCTAGAGAAAGCTGAGGGTGAAGTGA
TCCGCCAGAGCCAGTCCCTCAGAGAGCTCATCTCAGACCTGGAGTTCCGGTGCCAGGGGTCCAC
TGTAGATCTGCTGCAGGATGTGAATGATCTCACCCAAAGGAGTGAGTTCTGGGCCCTGAGGAAG
CCGCAAGTGCTCCCCACCAAGCTGAGAAGTGCCTTTCGAGCCCCAGATCTGAAAAAGATGCTGC
AAGTGTTTCGAGAGCTCACCGACGTCCAGAGCTACTGGGGTGAGATTCGTGGGTGCTAAGCTGA
CCGGACCGTCCCGTCTGGAAGAACATTATGACTGTAGCATCCTGGGCTCTCAGCACTTCTCCTC
AGGAAAATACTACTGGGAGGTGGACG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005380152	(Get FASTA)	NCBI Sequence Viewer
	XP_013367448	(Get FASTA)	NCBI Sequence Viewer
	XP_013367449	(Get FASTA)	NCBI Sequence Viewer
	XP_013367451	(Get FASTA)	NCBI Sequence Viewer
	XP_013367452	(Get FASTA)	NCBI Sequence Viewer
	XP_013367453	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000023833.1
	ENSCLAP00000023834
	ENSCLAP00000023834.1
	ENSCLAP00000023835
	ENSCLAP00000023835.1

RefSeq Acc Id:	XP_005380152 ⟸ XM_005380095
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W6E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITENSEKSGRHQEQESSCPVCQTRYH PRSLRPNRHLANIAERLREVVLGPGEQPRVVLCAYHGEKLQLFCKEDGKLICWLCERSQEHHGH HTFLMAEVAPEYQEMFQESLKKLKKEEEEAERLKAAIREKRASWKNQMEPERHRIQKEFNQLRS ILDKEEQRELRKLEEKERKGLSILEKAEGEVIRQSQSLRELISDLEFRCQGSTVDLLQDVNDLT QRSEFWALRKPQVLPTKLRSAFRAPDLKKMLQVFRELTDVQSYWVDVTMNPHSANLNLVLSKNR RQVRFVGAKLTGPSRLEEHYDCSILGSQHFSSGKYYWEVDVTKKTAWILGVCSNSTGPPFACSR YPNSQNTYSRYQPQTGYWVIGLQHKREYRAYEDSSTSLLLSMTVPPRRIGVYLDYEAGTVSFYN VTNHGLPIYTFSKYYFPTALCPYFNPCDCVVPMTLRRPGP hide sequence

RefSeq Acc Id:	XP_013367451 ⟸ XM_013511997
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W6E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITENSEKSGRHQEQESSCPVCQTRYH PRSLRPNRHLANIAERLREVVLGPGEQPRVVLCAYHGEKLQLFCKEDGKLICWLCERSQEHHGH HTFLMAEVAPEYQEMFQESLKKLKKEEEEAERLKAAIREKRASWKNQMEPERHRIQKEFNQLRS ILDKEEQRELRKLEEKERKGLSILEKAEGEVIRQSQSLRELISDLEFRCQGSTVDLLQDVNDLT QRSEFWALRKPQVLPTKLRSAFRAPDLKKMLQVFRELTDVQSYWVDVTMNPHSANLNLVLSKNR RQVRFVGAKLTGPSRLEEHYDCSILGSQHFSSGKYYWEVDVTKKTAWILGVCSNSTGPPFACSR YPNSQNTYSRYQPQTGYWVIGLQHKREYRAYEDSSTSLLLSMTVPPRRIGVYLDYEAGTVSFYN VTNHGLPIYTFSKYYFPTALCPYFNPCDCVVPMTLRRPGP hide sequence

RefSeq Acc Id:

XP_013367453 ⟸ XM_013511999

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTSRVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITENSEKSGRHQEQESSCPVCQTRYH
PRSLRPNRHLANIAERLREVVLGPGEQPRVVLCAYHGEKLQLFCKEDGKLICWLCERSQEHHGH
HTFLMAEVAPEYQEMFQESLKKLKKEEEEAERLKAAIREKRASWKNQMEPERHRIQKEFNQLRS
ILDKEEQRELRKLEEKERKGLSILEKAEGEVIRQSQSLRELISDLEFRCQGSTVDLLQDVNDLT
QRSEFWALRKPQVLPTKLRSAFRAPDLKKMLQVFRELTDVQSYWGEIRGC

hide sequence

RefSeq Acc Id:	XP_013367452 ⟸ XM_013511998
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W6E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITENSEKSGRHQEQESSCPVCQTRYH PRSLRPNRHLANIAERLREVVLGPGEQPRVVLCAYHGEKLQLFCKEDGKLICWLCERSQEHHGH HTFLMAEVAPEYQEMFQESLKKLKKEEEEAERLKAAIREKRASWKNQMEPERHRIQKEFNQLRS ILDKEEQRELRKLEEKERKGLSILEKAEGEVIRQSQSLRELISDLEFRCQGSTVDLLQDVNDLT QRSEFWALRKPQVLPTKLRSAFRAPDLKKMLQVFRELTDVQSYWVDVTMNPHSANLNLVLSKNR RQVRFVGAKLTGPSRLEEHYDCSILGSQHFSSGKYYWEVDVTKKTAWILGVCSNSTGPPFACSR YPNSQNTYSRYQPQTGYWVIGLQHKREYRAYEDSSTSLLLSMTVPPRRIGVYLDYEAGTVSFYN VTNHGLPIYTFSKYYFPTALCPYFNPCDCVVPMTLRRPGP hide sequence

RefSeq Acc Id:	XP_013367448 ⟸ XM_013511994
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W6E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITENSEKSGRHQEQESSCPVCQTRYH PRSLRPNRHLANIAERLREVVLGPGEQPRVVLCAYHGEKLQLFCKEDGKLICWLCERSQEHHGH HTFLMAEVAPEYQEMFQESLKKLKKEEEEAERLKAAIREKRASWKNQMEPERHRIQKEFNQLRS ILDKEEQRELRKLEEKERKGLSILEKAEGEVIRQSQSLRELISDLEFRCQGSTVDLLQDVNDLT QRSEFWALRKPQVLPTKLRSAFRAPDLKKMLQVFRELTDVQSYWVDVTMNPHSANLNLVLSKNR RQVRFVGAKLTGPSRLEEHYDCSILGSQHFSSGKYYWEVDVTKKTAWILGVCSNSTGPPFACSR YPNSQNTYSRYQPQTGYWVIGLQHKREYRAYEDSSTSLLLSMTVPPRRIGVYLDYEAGTVSFYN VTNHGLPIYTFSKYYFPTALCPYFNPCDCVVPMTLRRPGP hide sequence

RefSeq Acc Id:	XP_013367449 ⟸ XM_013511995
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C2W6E3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTSRVLVDIREEVTCPICLELLTEPLSIDCGHSFCQACITENSEKSGRHQEQESSCPVCQTRYH PRSLRPNRHLANIAERLREVVLGPGEQPRVVLCAYHGEKLQLFCKEDGKLICWLCERSQEHHGH HTFLMAEVAPEYQEMFQESLKKLKKEEEEAERLKAAIREKRASWKNQMEPERHRIQKEFNQLRS ILDKEEQRELRKLEEKERKGLSILEKAEGEVIRQSQSLRELISDLEFRCQGSTVDLLQDVNDLT QRSEFWALRKPQVLPTKLRSAFRAPDLKKMLQVFRELTDVQSYWVDVTMNPHSANLNLVLSKNR RQVRFVGAKLTGPSRLEEHYDCSILGSQHFSSGKYYWEVDVTKKTAWILGVCSNSTGPPFACSR YPNSQNTYSRYQPQTGYWVIGLQHKREYRAYEDSSTSLLLSMTVPPRRIGVYLDYEAGTVSFYN VTNHGLPIYTFSKYYFPTALCPYFNPCDCVVPMTLRRPGP hide sequence

RefSeq Acc Id:

ENSCLAP00000023834 ⟸ ENSCLAT00000024060

RefSeq Acc Id:

ENSCLAP00000023835 ⟸ ENSCLAT00000024061

RefSeq Acc Id:

ENSCLAP00000023833 ⟸ ENSCLAT00000024059

Protein Domains

B box-type B30.2/SPRY RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000016363	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000024059.1	UniProtKB/TrEMBL
	ENSCLAT00000024060	ENTREZGENE
	ENSCLAT00000024060.1	UniProtKB/TrEMBL
	ENSCLAT00000024061	ENTREZGENE
	ENSCLAT00000024061.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.920	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	B30.2/SPRY	UniProtKB/TrEMBL
	B30.2/SPRY_sf	UniProtKB/TrEMBL
	Butyrophylin_SPRY	UniProtKB/TrEMBL
	ConA-like_dom_sf	UniProtKB/TrEMBL
	PRY	UniProtKB/TrEMBL
	PRY/SPRY_TRIM6	UniProtKB/TrEMBL
	SPRY_dom	UniProtKB/TrEMBL
	Znf-RING_LisH	UniProtKB/TrEMBL
	Znf_B-box	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
NCBI Gene	Trim6	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE TRIM	UniProtKB/TrEMBL
	TRIPARTITE MOTIF-CONTAINING PROTEIN 6	UniProtKB/TrEMBL
Pfam	SPRY	UniProtKB/TrEMBL
	zf-B_box	UniProtKB/TrEMBL
	zf-RING_UBOX	UniProtKB/TrEMBL
PRINTS	BUTYPHLNCDUF	UniProtKB/TrEMBL
PROSITE	B302_SPRY	UniProtKB/TrEMBL
	ZF_BBOX	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	BBOX	UniProtKB/TrEMBL
	PRY	UniProtKB/TrEMBL
	RING	UniProtKB/TrEMBL
	SPRY	UniProtKB/TrEMBL
Superfamily-SCOP	B-box zinc-binding domain	UniProtKB/TrEMBL
	RING/U-box	UniProtKB/TrEMBL
	SSF49899	UniProtKB/TrEMBL
UniProt	A0A8C2W6E3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar