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ONTOLOGY REPORT - ANNOTATIONS

Term:exon-exon junction complex
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Accession:GO:0035145 term browser browse the term
Definition:A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
Synonyms:exact_synonym: EJC;   exon junction complex


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exon-exon junction complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 located_in
part_of		 ISO (PMID:16314458) UniProt
GO_Central		 PMID:16314458 GO_REF:0000119 NCBI chr14:54,879,618...54,924,422
Ensembl chr14:54,879,618...54,924,388 		JBrowse link
G Alyref Aly/REF export factor located_in
part_of		 ISO (PMID:16314458) UniProt
GO_Central		 PMID:16314458 GO_REF:0000119 NCBI chr11:120,485,330...120,489,342
Ensembl chr11:120,482,947...120,489,191 		JBrowse link
G Alyref2 Aly/REF export factor 2 part_of ISO GO_Central GO_REF:0000119 NCBI chr 1:171,331,046...171,332,318
Ensembl chr 1:171,331,046...171,332,324 		JBrowse link
G Alyreffm1 Aly/REF export factor family member 1 part_of ISO GO_Central GO_REF:0000119 NCBI chr 1:31,180,159...31,261,737
Ensembl chr 1:31,036,933...31,261,765 		JBrowse link
G Alyreffm10 Aly/REF export factor family member 10 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:104,029,903...104,032,383
Ensembl chr10:104,029,903...104,032,383 		JBrowse link
G Alyreffm11 Aly/REF export factor family member 11 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:103,978,848...103,981,288
Ensembl chr10:103,978,848...103,981,317 		JBrowse link
G Alyreffm3 Aly/REF export factor family member 3 part_of ISO GO_Central GO_REF:0000119 NCBI chr 1:31,016,327...31,017,049
Ensembl chr 1:31,016,324...31,017,049 		JBrowse link
G Alyreffm4 Aly/REF export factor family member 4 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:100,171,538...100,172,451
Ensembl chr10:100,171,538...100,172,451 		JBrowse link
G Alyreffm5 Aly/REF export factor family member 5 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:100,176,698...100,177,624
Ensembl chr10:100,176,698...100,177,624 		JBrowse link
G Alyreffm6 Aly/REF export factor family member 6 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:100,181,834...100,182,743
Ensembl chr10:100,181,834...100,182,743 		JBrowse link
G Alyreffm7 Aly/REF export factor family member 7 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:100,186,955...100,187,864
Ensembl chr10:100,186,955...100,187,864 		JBrowse link
G Alyreffm8 Aly/REF export factor family member 8 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:100,197,200...100,198,109
Ensembl chr10:100,197,200...100,198,109 		JBrowse link
G Alyreffm9 Aly/REF export factor family member 9 part_of ISO GO_Central GO_REF:0000119 NCBI chr10:100,217,509...100,218,422
Ensembl chr10:100,217,532...100,218,392 		JBrowse link
G Casc3 exon junction complex subunit part_of IBA
ISO
ISS		 GO_Central
ComplexPortal		 GO_REF:0000033 GO_REF:0000114 GO_REF:0000119 NCBI chr11:98,700,634...98,724,633
Ensembl chr11:98,695,731...98,724,640 		JBrowse link
G Ccdc9 coiled-coil domain containing 9 part_of ISS
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000119 NCBI chr 7:16,005,938...16,020,713
Ensembl chr 7:16,007,967...16,020,720 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 part_of ISO
ISS		 GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915 		JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 part_of ISO GO_Central GO_REF:0000119 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981 		JBrowse link
G Eif4a3l2 eukaryotic translation initiation factor 4A3 like 2 part_of ISO GO_Central GO_REF:0000119 NCBI chr 6:116,527,132...116,529,563
Ensembl chr 6:116,528,102...116,529,463 		JBrowse link
G Magoh mago homolog, exon junction complex core component part_of ISO
IBA		 ComplexPortal
GO_Central		 GO_REF:0000033 GO_REF:0000114 GO_REF:0000119 NCBI chr 4:107,736,952...107,744,621
Ensembl chr 4:107,736,952...107,744,621 		JBrowse link
G Magohb mago homolog B, exon junction complex core component part_of ISS
IBA
ISO		 ComplexPortal
GO_Central		 GO_REF:0000033 GO_REF:0000114 GO_REF:0000119 NCBI chr 6:131,261,351...131,270,207
Ensembl chr 6:131,261,351...131,270,207 		JBrowse link
G Pnn pinin located_in
part_of		 ISO (PMID:16314458) UniProt
GO_Central		 PMID:16314458 GO_REF:0000119 NCBI chr12:59,113,705...59,120,803
Ensembl chr12:59,113,670...59,120,784 		JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor part_of ISS
IBA
ISO		 UniProt
GO_Central		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000119 NCBI chr10:128,579,989...128,602,437
Ensembl chr10:128,583,758...128,602,433 		JBrowse link
G R3hcc1l R3H domain and coiled-coil containing 1 like located_in
part_of		 ISO
ISS		 (PMID:20930030) UniProt
UniProt
GO_Central		 PMID:20930030 GO_REF:0000024 GO_REF:0000119 NCBI chr19:42,506,419...42,580,713
Ensembl chr19:42,507,198...42,580,782 		JBrowse link
G Rbm8a RNA binding motif protein 8a part_of ISO
IBA
ISS		 ComplexPortal
GO_Central		 GO_REF:0000033 GO_REF:0000114 GO_REF:0000119 NCBI chr 3:96,537,244...96,541,107
Ensembl chr 3:96,537,249...96,541,107 		JBrowse link
G Rbm8a2 RNA binding motif protein 8A2 part_of ISO
IBA		 GO_Central GO_REF:0000033 GO_REF:0000119 NCBI chr 1:175,805,784...175,806,509
Ensembl chr 1:175,805,343...175,806,680 		JBrowse link
G Sap18 Sin3-associated polypeptide 18 located_in
part_of		 ISO (PMID:16314458) UniProt
GO_Central		 PMID:16314458 GO_REF:0000119 NCBI chr14:58,035,646...58,042,437
Ensembl chr14:58,035,637...58,044,095 		JBrowse link
G Sap18b Sin3-associated polypeptide 18B part_of ISO GO_Central GO_REF:0000119 NCBI chr 8:96,551,984...96,552,784
Ensembl chr 8:96,551,974...96,552,762 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor located_in
part_of		 ISO
ISS		 (PMID:20930030) UniProt
GO_Central
UniProt		 PMID:20930030 GO_REF:0000024 GO_REF:0000119 NCBI chr11:74,816,665...75,055,274
Ensembl chr11:74,816,649...75,055,274 		JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 located_in
part_of		 ISO (PMID:16314458) UniProt
GO_Central		 PMID:16314458 GO_REF:0000119 NCBI chr11:87,937,325...87,944,583
Ensembl chr11:87,938,199...87,944,581 		JBrowse link
G Tdrd3 tudor domain containing 3 located_in
part_of		 ISO
ISS		 (PMID:20930030) UniProt
UniProt
GO_Central		 PMID:20930030 GO_REF:0000024 GO_REF:0000119 NCBI chr14:87,647,598...87,782,944
Ensembl chr14:87,654,075...87,782,940 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 located_in
part_of		 ISO
ISS		 (PMID:20123736) UniProt
GO_Central
UniProt		 PMID:20123736 GO_REF:0000024 GO_REF:0000119 NCBI chr 4:126,057,875...126,096,548
Ensembl chr 4:126,057,875...126,096,553 		JBrowse link
G Upf1 UPF1 RNA helicase and ATPase part_of IEA
ISO		 Ensembl
GO_Central		 GO_REF:0000107 GO_REF:0000119 NCBI chr 8:70,784,143...70,806,418
Ensembl chr 8:70,784,175...70,805,928 		JBrowse link
G Upf2 UPF2 regulator of nonsense transcripts homolog (yeast) part_of IBA
IEA
ISO		 GO_Central
Ensembl		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000119 NCBI chr 2:5,956,218...6,061,514
Ensembl chr 2:5,956,280...6,061,514 		JBrowse link
G Upf3a UPF3 regulator of nonsense transcripts homolog A (yeast) part_of ISO (PMID:16601204) GO_Central PMID:16601204 NCBI chr 8:13,834,636...13,848,723
Ensembl chr 8:13,835,615...13,849,193 		JBrowse link
G Upf3b UPF3 regulator of nonsense transcripts homolog B (yeast) part_of ISO GO_Central GO_REF:0000119 NCBI chr  X:36,355,331...36,374,124
Ensembl chr  X:36,355,331...36,373,975 		JBrowse link
exon-exon junction subcomplex mago-y14 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Magoh mago homolog, exon junction complex core component part_of ISO ComplexPortal
GO_Central		 GO_REF:0000114 GO_REF:0000119 NCBI chr 4:107,736,952...107,744,621
Ensembl chr 4:107,736,952...107,744,621 		JBrowse link
G Magohb mago homolog B, exon junction complex core component part_of ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 6:131,261,351...131,270,207
Ensembl chr 6:131,261,351...131,270,207 		JBrowse link
G Rbm8a RNA binding motif protein 8a part_of ISO GO_Central
ComplexPortal		 GO_REF:0000114 GO_REF:0000119 NCBI chr 3:96,537,244...96,541,107
Ensembl chr 3:96,537,249...96,541,107 		JBrowse link
G Rbm8a2 RNA binding motif protein 8A2 part_of ISO GO_Central GO_REF:0000119 NCBI chr 1:175,805,784...175,806,509
Ensembl chr 1:175,805,343...175,806,680 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28566
    protein-containing complex 6101
      nuclear protein-containing complex 1294
        exon-exon junction complex 35
          exon-exon junction subcomplex mago-y14 4
Path 2
Term Annotations click to browse term
  cellular_component 28566
    cellular anatomical structure 19592
      organelle 13697
        membrane-bounded organelle 12698
          intracellular membrane-bounded organelle 12142
            nucleus 7539
              nuclear protein-containing complex 1294
                exon-exon junction complex 35
                  exon-exon junction subcomplex mago-y14 4
paths to the root