Smg6 (Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)) - Rat Genome Database
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Gene: Smg6 (Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)) Mus musculus
Analyze
Symbol: Smg6
Name: Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)
RGD ID: 1616658
MGI Page MGI
Description: Orthologous to human SMG6 (SMG6 nonsense mediated mRNA decay factor); PARTICIPATES IN mRNA decay pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI317223; AU041178; EST1-like protein A; ever shorter telomeres 1A; MGC7717; RP23-143A14.6; telomerase subunit EST1A; telomerase-binding protein EST1A
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,816,665 - 75,055,274 (+)NCBIGRCm39mm39
GRCm39 Ensembl1174,816,649 - 75,055,274 (+)Ensembl
GRCm381174,925,854 - 75,164,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,925,823 - 75,164,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,739,374 - 74,977,950 (+)NCBIGRCm37mm9NCBIm37
MGSCv361174,742,067 - 74,980,643 (+)NCBImm8
Celera1182,431,995 - 82,671,219 (+)NCBICelera
Cytogenetic Map11B5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10512203   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14610273  
PMID:14621295   PMID:15489334   PMID:15741177   PMID:15840001   PMID:16141072   PMID:16141073   PMID:18799693   PMID:21267068   PMID:21873635   PMID:25770585   PMID:28671696   PMID:32325033  


Genomics

Comparative Map Data
Smg6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391174,816,665 - 75,055,274 (+)NCBIGRCm39mm39
GRCm39 Ensembl1174,816,649 - 75,055,274 (+)Ensembl
GRCm381174,925,854 - 75,164,448 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,925,823 - 75,164,448 (+)EnsemblGRCm38mm10GRCm38
MGSCv371174,739,374 - 74,977,950 (+)NCBIGRCm37mm9NCBIm37
MGSCv361174,742,067 - 74,980,643 (+)NCBImm8
Celera1182,431,995 - 82,671,219 (+)NCBICelera
Cytogenetic Map11B5NCBI
SMG6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl172,059,839 - 2,303,785 (-)EnsemblGRCh38hg38GRCh38
GRCh38172,059,839 - 2,303,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37171,963,133 - 2,207,079 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36171,909,883 - 2,153,819 (-)NCBINCBI36hg18NCBI36
Build 34171,909,887 - 2,153,769NCBI
Celera171,979,148 - 2,222,926 (-)NCBI
Cytogenetic Map17p13.3NCBI
HuRef171,858,147 - 2,101,841 (-)NCBIHuRef
CHM1_1171,971,903 - 2,215,708 (-)NCBICHM1_1
Smg6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21059,786,258 - 60,014,395 (+)NCBI
Rnor_6.0 Ensembl1061,527,462 - 61,540,774 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1061,772,449 - 62,007,030 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01061,526,024 - 61,542,583 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.01061,771,912 - 62,007,030 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01061,493,274 - 61,721,420 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01061,248,898 - 61,263,673 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41062,234,450 - 62,470,611 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11062,437,519 - 62,461,510 (+)NCBI
Celera1058,816,443 - 59,044,342 (+)NCBICelera
Cytogenetic Map10q24NCBI
Smg6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955481940,041 - 1,177,998 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955481940,041 - 1,177,998 (+)NCBIChiLan1.0ChiLan1.0
SMG6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1171,937,630 - 2,179,535 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl171,937,630 - 2,179,535 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0172,050,825 - 2,294,892 (-)NCBIMhudiblu_PPA_v0panPan3
SMG6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl946,164,492 - 46,405,748 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1946,162,991 - 46,405,856 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Smg6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365388,126,307 - 8,361,920 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMG6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1248,172,706 - 48,386,886 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11248,172,705 - 48,386,996 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21250,025,724 - 50,195,666 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMG6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1161,698,039 - 1,940,753 (-)NCBI
ChlSab1.1 Ensembl161,695,647 - 1,940,739 (-)Ensembl
Smg6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247864,729,857 - 4,969,708 (-)NCBI

Position Markers
RH126523  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,164,636 - 75,164,764UniSTSGRCm38
MGSCv371174,978,138 - 74,978,266UniSTSGRCm37
Celera1182,671,407 - 82,671,535UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.65UniSTS
Whitehead/MRC_RH11930.26UniSTS
RH136170  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,161,999 - 75,162,178UniSTSGRCm38
MGSCv371174,975,501 - 74,975,680UniSTSGRCm37
Celera1182,668,769 - 82,668,948UniSTS
Cytogenetic Map11B5UniSTS
RH124699  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,164,569 - 75,164,713UniSTSGRCm38
MGSCv371174,978,071 - 74,978,215UniSTSGRCm37
Celera1182,671,340 - 82,671,484UniSTS
Cytogenetic Map11B5UniSTS
cM Map1147.65UniSTS
D11Jcs6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,087,017 - 75,087,187UniSTSGRCm38
MGSCv371174,900,519 - 74,900,689UniSTSGRCm37
Celera1182,594,107 - 82,594,277UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.0UniSTS
RH126027  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,993,654 - 74,993,867UniSTSGRCm38
MGSCv371174,807,156 - 74,807,369UniSTSGRCm37
Celera1182,499,850 - 82,500,063UniSTS
Cytogenetic Map11B5UniSTS
cM Map1145.0UniSTS
RH137267  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,162,864 - 75,163,061UniSTSGRCm38
MGSCv371174,976,366 - 74,976,563UniSTSGRCm37
Celera1182,669,634 - 82,669,831UniSTS
Cytogenetic Map11B5UniSTS
D11Bhm12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,970,632 - 74,970,737UniSTSGRCm38
MGSCv371174,784,134 - 74,784,239UniSTSGRCm37
Celera1182,476,835 - 82,476,940UniSTS
Cytogenetic Map11B5UniSTS
cM Map1143.91UniSTS
D11Bhm13  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381174,986,755 - 74,986,864UniSTSGRCm38
MGSCv371174,800,257 - 74,800,366UniSTSGRCm37
Celera1182,492,951 - 82,493,060UniSTS
Cytogenetic Map11B5UniSTS
cM Map1143.94UniSTS
D11Bhm14  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,017,315 - 75,017,398UniSTSGRCm38
MGSCv371174,830,817 - 74,830,900UniSTSGRCm37
Celera1182,523,550 - 82,523,633UniSTS
Cytogenetic Map11B5UniSTS
cM Map1143.97UniSTS
D11Bhm16  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,060,148 - 75,060,241UniSTSGRCm38
MGSCv371174,873,650 - 74,873,743UniSTSGRCm37
Celera1182,566,944 - 82,567,037UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.03UniSTS
D11Bhm17  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,104,031 - 75,104,131UniSTSGRCm38
MGSCv371174,917,533 - 74,917,633UniSTSGRCm37
Celera1182,610,621 - 82,610,721UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.06UniSTS
D11Bhm18  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,104,223 - 75,104,309UniSTSGRCm38
MGSCv371174,917,725 - 74,917,811UniSTSGRCm37
Celera1182,610,813 - 82,610,899UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.09UniSTS
D11Bhm19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381175,128,926 - 75,129,007UniSTSGRCm38
MGSCv371174,942,428 - 74,942,509UniSTSGRCm37
Celera1182,635,578 - 82,635,659UniSTS
Cytogenetic Map11B5UniSTS
cM Map1144.12UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13208559Wght10_mweight 10 (mouse)11400000089000000Mouse
13208558Lgth12_mbody length 12 (mouse)11400000095000000Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11693027789128908Mouse
1357859Lvrq7_mliver weight QTL 7 (mouse)Not determined1112318637118131898Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112318637118131898Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1917420497007000Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112185736495990405Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113600000085000000Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113639175083590530Mouse
11532698Sluc36a_msusceptibility to lung cancer 36a (mouse)114236579176365904Mouse
11532699Sluc36b_msusceptibility to lung cancer 36b (mouse)114236579176365904Mouse
4142300Ctrq3_mC. trachomatis resistance QTL 3 (mouse)Not determined114473921176963931Mouse
4141367Inf1_macute ozone induced inflammation (mouse)Not determined44739211113167183Mouse
4141000Nidd3_mnon-insulin-dependent diabetes mellitus 3 (mouse)Not determined4515120179151308Mouse
1302021Nidd1n_mnon-insulin-dependent diabetes mellitus 1 in NSY (mouse)Not determined114527504680087498Mouse
1357878Mastr_mmodifier of astrocytoma (mouse)Not determined114581775489927907Mouse
1300765Bbaa4_mB.burgdorferi-associated arthritis 4 (mouse)Not determined114629434180294436Mouse
1301988Bmd11_mbone mineral density 11 (mouse)Not determined114642858180428696Mouse
1301830Ssta4_msusceptibility to Salmonella typhimurium antigens 4 (mouse)Not determined115018736584187585Mouse
13524840Ppiq9a_mprepulse inhibition QTL 9a (mouse)115260355986603559Mouse
1300774Pgia7_mproteoglycan induced arthritis 7 (mouse)Not determined115349976287499911Mouse
4141830Pregq1_mpregnancy QTL 1 (mouse)Not determined115423592683842826Mouse
4142121Tmc1m2_mTmc1 modifier 2 (mouse)Not determined1156973201114267131Mouse
1300664Etohcta9_methanol conditioned taste aversion 9 (mouse)Not determined115786383491863932Mouse
1300924Ity2_mimmunity to S. typhimurium 2 (mouse)Not determined15861720487804412Mouse
4141982Skts-fp2_mskin tumor susceptibility in FVB and PWK 2 (mouse)Not determined5882844085175703Mouse
1301987Pid3_mprior incubation determinant 3 (mouse)Not determined116179599488808902Mouse
1301319Dautb4_mdopamine uptake transporter binding 4 (mouse)Not determined116226517996265327Mouse
27226730Tibmd1_mtibia midshaft diameter 1, 5 week (mouse)1162700000109500000Mouse
1301999Lmr15_mleishmaniasis resistance 15 (mouse)Not determined116342858181939647Mouse
10044004Stzid3_mstreptozotocin induced diabetes susceptibility 3 (mouse)Not determined116342858194173092Mouse
11039501Ltpr6a_mLeishmania tropica response 6a (mouse)116493951098939647Mouse
11039502Ltpr6b_mLeishmania tropica response 6b (mouse)116493951098939647Mouse
11039515Ltpr6_mLeishmania tropica response 6 (mouse)116493951098939647Mouse
1301546Pcir2_mperiosteal circumference 2 (mouse)Not determined1166842594100842826Mouse
1357766Si5lq6_mserum IGFBP-5 level QTL 6 (mouse)Not determined1166842594100842826Mouse
4141012Femwf6_mfemur work to failure 6 (mouse)Not determined66842594100842826Mouse
1301833Tbbmd5_mtotal body bone mineral density 5 (mouse)Not determined1166842594100842826Mouse
1300784Prdt3_mprion disease incubation time 3 (mouse)Not determined1166842594100842826Mouse
1300628Lgth6_mbody length 6 (mouse)Not determined1166842594100842826Mouse
4142316Ity2b_mimmunity to S. typhimurium 2b (mouse)Not determined116718736579923086Mouse
27226783Tibl5_mtibia length 5, 5 week (mouse)1168300000102000000Mouse
1300651Pcyts3_mplasmacytoma susceptibility 3 (mouse)Not determined1170800372104800540Mouse
1301681Sle13_msystematic lupus erythematosus susceptibility 13 (mouse)Not determined1170800372104800540Mouse
1558812Rafar_mretinoic acid induced forelimb autopod reduction (mouse)Not determined1170800372104800540Mouse
4141339Nilac2_mnicotine induced locomotor activity 2 (mouse)Not determined1170800372104800540Mouse
1301404Sbmd4_mspinal bone mineral density 4 (mouse)Not determined1172128823106128908Mouse
1301078Alcp2_malcohol preference locus 2 (mouse)Not determined117231897084840636Mouse
1301310Tmevd5_mTheiler's murine encephalomyelitis virus induced demyelinating disease susceptibility 5 (mouse)Not determined1172835299106835463Mouse
4142348Pstc2_mperiosteal circumference 2 (mouse)Not determined1172927789106927907Mouse
10043866Adip19_madiposity 19 (mouse)Not determined1172927789106927907Mouse
12903994Opfaq3_mopen field activity QTL 3 (mouse)117384671582178599Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2199
Count of miRNA genes:706
Interacting mature miRNAs:863
Transcripts:ENSMUST00000045281, ENSMUST00000130145, ENSMUST00000135522, ENSMUST00000140197, ENSMUST00000142038, ENSMUST00000153226
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001002764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011248660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156190 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK052642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL603905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL604066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL714018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC047279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC066040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC077715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY109058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02004834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000045281   ⟹   ENSMUSP00000043555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,925,823 - 75,164,448 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130145   ⟹   ENSMUSP00000120229
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,930,520 - 75,164,448 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135522
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,989,361 - 74,992,206 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140197   ⟹   ENSMUSP00000120060
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1174,993,853 - 75,139,369 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142038
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,132,435 - 75,139,369 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153226
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1175,159,633 - 75,163,182 (+)Ensembl
RefSeq Acc Id: NM_001002764   ⟹   NP_001002764
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391174,816,680 - 75,055,274 (+)NCBI
GRCm381174,925,854 - 75,164,448 (+)NCBI
MGSCv371174,739,374 - 74,977,950 (+)RGD
Celera1182,431,995 - 82,671,219 (+)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011248660   ⟹   XP_011246962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391174,816,665 - 75,054,330 (+)NCBI
GRCm381174,925,854 - 75,163,504 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036156190   ⟹   XP_036012083
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391174,816,768 - 75,054,744 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001002764   ⟸   NM_001002764
- UniProtKB: P61406 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011246962   ⟸   XM_011248660
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000120229   ⟸   ENSMUST00000130145
RefSeq Acc Id: ENSMUSP00000043555   ⟸   ENSMUST00000045281
RefSeq Acc Id: ENSMUSP00000120060   ⟸   ENSMUST00000140197
RefSeq Acc Id: XP_036012083   ⟸   XM_036156190
- Peptide Label: isoform X1
Protein Domains
EST1   EST1_DNA_bind   PINc

Promoters
RGD ID:6822169
Promoter ID:MM_KWN:8474
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Spleen
Transcripts:OTTMUST00000013971
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361174,739,154 - 74,739,654 (+)MPROMDB
RGD ID:8675516
Promoter ID:EPDNEW_M15789
Type:initiation region
Name:Smg6_1
Description:Mus musculus Smg-6 homolog, nonsense mediated mRNA decay factor, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381174,925,854 - 74,925,914EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2144117 AgrOrtholog
Ensembl Genes ENSMUSG00000038290 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000043555 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000120060 UniProtKB/TrEMBL
  ENSMUSP00000120229 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000045281 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000130145 UniProtKB/TrEMBL
  ENSMUST00000140197 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro DNA/RNA-bd_Est1-type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EST1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIN-like_dom_sf UniProtKB/Swiss-Prot
  PIN_dom UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:103677 UniProtKB/Swiss-Prot
MGD MGI:2144117 ENTREZGENE
NCBI Gene 103677 ENTREZGENE
Pfam EST1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EST1_DNA_bind UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PIN_4 UniProtKB/Swiss-Prot
PhenoGen Smg6 PhenoGen
SMART PINc UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF88723 UniProtKB/Swiss-Prot
UniProt A0PJ64_MOUSE UniProtKB/TrEMBL
  B1ARG9_MOUSE UniProtKB/TrEMBL
  EST1A_MOUSE UniProtKB/Swiss-Prot
  F6WT10_MOUSE UniProtKB/TrEMBL
  P61406 ENTREZGENE
UniProt Secondary Q5NC64 UniProtKB/Swiss-Prot