Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:exon-exon junction complex
go back to main search page
Accession:GO:0035145 term browser browse the term
Definition:A multi-subunit complex deposited by the spliceosome upstream of messenger RNA exon-exon junctions. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
Synonyms:exact_synonym: EJC;   exon junction complex


show annotations for term's descendants           Sort by:
exon-exon junction complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acin1 apoptotic chromatin condensation inducer 1 located_in ISO (PMID:16314458) RGD PMID:16314458 NCBI chr15:28,102,112...28,147,001
Ensembl chr15:28,102,112...28,147,001 		JBrowse link
G Alyref Aly/REF export factor located_in ISO (PMID:16314458) RGD PMID:16314458 NCBI chr10:105,871,424...105,875,076
Ensembl chr10:105,871,306...105,875,069 		JBrowse link
G Casc3 CASC3 exon junction complex subunit part_of
located_in		 ISO
IEA
IBA		 (PMID:16601204)
(PMID:16931718)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033		 RGD
Ensembl
InterPro
GO_Central		 PMID:16601204 PMID:16931718 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr10:83,769,014...83,788,966
Ensembl chr10:83,769,001...83,788,966 		JBrowse link
G Ccdc9 coiled-coil domain containing 9 part_of ISO (PMID:33973408) RGD PMID:33973408 NCBI chr 1:76,978,312...76,991,673
Ensembl chr 1:76,974,091...76,991,607 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 part_of
located_in		 ISO (PMID:16601204)
(PMID:16931718)		 RGD PMID:16601204 PMID:16931718 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:104,549,038...104,559,057 		JBrowse link
G Magoh mago homolog, exon junction complex subunit part_of
located_in		 ISO
IBA		 (PMID:16601204), (PMID:18026120), (PMID:19410547), (PMID:23917022)
GO_REF:0000033
(PMID:16931718)		 RGD
GO_Central		 PMID:16601204 PMID:16931718 PMID:18026120 PMID:19410547 PMID:23917022 GO_REF:0000033 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit part_of ISO
IBA		 (PMID:23917022)
GO_REF:0000033		 RGD
GO_Central		 PMID:23917022 GO_REF:0000033 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967 		JBrowse link
G Pnn pinin, desmosome associated protein located_in ISO (PMID:16314458) RGD PMID:16314458 NCBI chr 6:76,758,138...76,766,451
Ensembl chr 6:76,758,117...76,766,889 		JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor part_of ISO
IBA		 (PMID:18026120)
GO_REF:0000033		 RGD
GO_Central		 PMID:18026120 GO_REF:0000033 NCBI chr 7:1,177,746...1,200,899
Ensembl chr 7:1,178,008...1,198,937 		JBrowse link
G R3hcc1l R3H domain and coiled-coil containing 1-like located_in ISO (PMID:20930030) RGD PMID:20930030 NCBI chr 1:241,317,199...241,395,240
Ensembl chr 1:241,317,272...241,395,240 		JBrowse link
G Rbm8a RNA binding motif protein 8A part_of
located_in		 ISO
IBA		 (PMID:16601204), (PMID:18026120), (PMID:19410547)
GO_REF:0000033
(PMID:16931718)		 RGD
GO_Central		 PMID:16601204 PMID:16931718 PMID:18026120 PMID:19410547 GO_REF:0000033 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959 		JBrowse link
G Sap18 Sin3A associated protein 18 located_in ISO (PMID:16314458) RGD PMID:16314458 NCBI chr15:31,943,228...31,947,534
Ensembl chr15:31,943,230...31,950,038
Ensembl chr10:31,943,230...31,950,038 		JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor located_in ISO (PMID:20930030) RGD PMID:20930030 NCBI chr10:59,786,258...60,014,395
Ensembl chr10:59,786,258...60,014,395 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 located_in ISO (PMID:16314458) RGD PMID:16314458 NCBI chr10:72,838,926...72,859,066
Ensembl chr10:72,839,274...72,845,336 		JBrowse link
G Tdrd3 tudor domain containing 3 part_of
located_in		 IEA
ISO
ISS		 GO_REF:0000107
(PMID:20930030)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:20930030 GO_REF:0000024 GO_REF:0000107 NCBI chr15:63,340,531...63,497,208
Ensembl chr15:63,341,235...63,476,110 		JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 part_of
located_in		 IEA
ISO
ISS		 GO_REF:0000002
(PMID:20123736)
GO_REF:0000024		 InterPro
RGD
UniProt		 PMID:20123736 GO_REF:0000002 GO_REF:0000024 NCBI chr 5:138,445,284...138,487,544
Ensembl chr 5:138,445,295...138,487,477 		JBrowse link
G Upf1 UPF1, RNA helicase and ATPase part_of ISO (PMID:16601204) RGD PMID:16601204 NCBI chr16:19,076,594...19,097,365
Ensembl chr16:19,076,322...19,096,568 		JBrowse link
G Upf2 UPF2, regulator of nonsense mediated mRNA decay part_of ISO
IBA		 (PMID:16601204)
GO_REF:0000033		 RGD
GO_Central		 PMID:16601204 GO_REF:0000033 NCBI chr17:72,224,575...72,335,896
Ensembl chr17:72,225,316...72,335,855 		JBrowse link
G Upf3a UPF3A, regulator of nonsense mediated mRNA decay part_of ISO (PMID:16601204) RGD PMID:16601204 NCBI chr16:75,757,442...75,768,478
Ensembl chr16:75,757,441...75,769,345 		JBrowse link
G Upf3b UPF3B, regulator of nonsense mediated mRNA decay part_of ISO (PMID:11546873), (PMID:12718880), (PMID:16601204) RGD PMID:11546873 PMID:12718880 PMID:16601204 NCBI chr  X:116,335,308...116,353,332
Ensembl chr  X:116,335,308...116,353,236 		JBrowse link
exon-exon junction subcomplex mago-y14 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Magoh mago homolog, exon junction complex subunit located_in
part_of		 ISO
IEA		 (PMID:12781131)
GO_REF:0000107		 RGD
Ensembl		 PMID:12781131 GO_REF:0000107 NCBI chr 5:122,639,268...122,646,650
Ensembl chr 5:122,639,308...122,646,617 		JBrowse link
G Magohb mago homolog B, exon junction complex subunit located_in ISO (PMID:25416956) RGD PMID:25416956 NCBI chr 4:165,034,131...165,041,977
Ensembl chr 4:165,034,122...165,041,967 		JBrowse link
G Rbm8a RNA binding motif protein 8A located_in ISO (PMID:12781131), (PMID:25416956) RGD PMID:12781131 PMID:25416956 NCBI chr 2:184,165,189...184,167,959
Ensembl chr 2:184,165,193...184,167,959 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20624
    protein-containing complex 6602
      nuclear protein-containing complex 1276
        exon-exon junction complex 20
          exon-exon junction subcomplex mago-y14 3
Path 2
Term Annotations click to browse term
  cellular_component 20624
    cellular anatomical entity 20386
      organelle 13799
        membrane-bounded organelle 12396
          intracellular membrane-bounded organelle 11845
            nucleus 7395
              nuclear protein-containing complex 1276
                exon-exon junction complex 20
                  exon-exon junction subcomplex mago-y14 3
paths to the root