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stereocilium tip - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:stereocilium tip
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Accession:GO:0032426 term browser browse the term
Definition:A distinct compartment at the tip of a stereocilium, distal to the site of attachment to the apical cell surface. It consists of a dense matrix bridging the barbed ends of the stereocilium actin filaments with the overlying plasma membrane, is dynamic compared to the shaft, and is required for stereocilium elongation.

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show annotations for term's descendants           Sort by:
stereocilium tip term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc14a cell division cycle 14A located_in ISO
IEA		 (PMID:29293958)
GO_REF:0000107		 RGD
Ensembl		 PMID:29293958 GO_REF:0000107 NCBI chr 2:206,910,475...207,070,537
Ensembl chr 2:204,225,540...204,380,927 		JBrowse link
G Cdh23 cadherin-related 23 located_in IEA
ISO		 GO_REF:0000107
(PMID:12485990), (PMID:17050716), (PMID:24920589)		 Ensembl
RGD		 PMID:12485990 PMID:17050716 PMID:24920589 GO_REF:0000107 NCBI chr20:28,783,124...29,165,624
Ensembl chr20:28,240,645...28,622,419 		JBrowse link
G Ceacam16 CEA cell adhesion molecule 16, tectorial membrane component located_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:21368133)		 Ensembl
UniProt
RGD		 PMID:21368133 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:88,642,925...88,652,821
Ensembl chr 1:79,514,975...79,524,871 		JBrowse link
G Coro1a coronin 1A is_active_in ISO (PMID:26754646) RGD PMID:26754646 NCBI chr 1:190,726,129...190,731,133
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Eps8 EGFR pathway substrate 8, signaling adaptor located_in IEA
ISO		 GO_REF:0000107
(PMID:23918390)		 Ensembl
RGD		 PMID:23918390 GO_REF:0000107 NCBI chr 4:172,119,497...172,291,670
Ensembl chr 4:170,388,378...170,486,873 		JBrowse link
G Eps8l2 EPS8 signaling adaptor L2 located_in ISO
IEA		 (PMID:23918390)
GO_REF:0000107		 RGD
Ensembl		 PMID:23918390 GO_REF:0000107 NCBI chr 1:205,875,825...205,901,109
Ensembl chr 1:196,446,287...196,471,541 		JBrowse link
G Espn espin located_in
is_active_in		 ISS
ISO		 GO_REF:0000024
(PMID:26754646)
(PMID:22264607), (PMID:26754646)		 UniProt
RGD		 PMID:22264607 PMID:26754646 GO_REF:0000024 NCBI chr 5:167,909,271...167,943,168
Ensembl chr 5:162,626,560...162,660,256 		JBrowse link
G Espnl espin-like is_active_in
located_in		 ISO
IEA		 (PMID:26754646)
(PMID:26926603)
GO_REF:0000107		 RGD
Ensembl		 PMID:26754646 PMID:26926603 GO_REF:0000107 NCBI chr 9:99,358,907...99,385,439
Ensembl chr 9:91,912,049...91,935,292 		JBrowse link
G Homer2 homer scaffold protein 2 located_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25816005)		 UniProt
Ensembl
RGD		 PMID:25816005 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:144,968,207...145,069,022
Ensembl chr 1:135,567,414...135,659,772 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 located_in ISO
IEA		 (PMID:23217710)
GO_REF:0000107		 RGD
Ensembl		 PMID:23217710 GO_REF:0000107 NCBI chr20:6,634,058...6,644,264
Ensembl chr20:6,632,362...6,642,532 		JBrowse link
G Morn4 MORN repeat containing 4 located_in
is_active_in		 ISS
ISO		 GO_REF:0000024
(PMID:26754646)		 UniProt
RGD		 PMID:26754646 GO_REF:0000024 NCBI chr 1:240,888,338...240,898,644
Ensembl chr 1:240,888,344...240,898,716 		JBrowse link
G Myo3a myosin IIIA is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26754646)
(PMID:21165622), (PMID:22264607), (PMID:26754646)		 GO_Central
RGD		 PMID:21165622 PMID:22264607 PMID:26754646 GO_REF:0000033 NCBI chr17:89,451,567...89,667,654
Ensembl chr17:84,543,552...84,759,042 		JBrowse link
G Myo3b myosin IIIB is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:26754646)
(PMID:22264607), (PMID:26754646)		 GO_Central
RGD		 PMID:22264607 PMID:26754646 GO_REF:0000033 NCBI chr 3:75,228,017...75,636,272
Ensembl chr 3:54,820,251...55,227,373 		JBrowse link
G Nherf1 NHERF family PDZ scaffold protein 1 located_in ISO (PMID:24920589) RGD PMID:24920589 NCBI chr10:100,902,165...100,919,265
Ensembl chr10:100,403,069...100,420,598 		JBrowse link
G Pdzd7 PDZ domain containing 7 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:253,837,454...253,856,919
Ensembl chr 1:243,888,281...243,906,839 		JBrowse link
G Pkhd1l1 PKHD1 like 1 located_in ISO
IEA		 (PMID:31444330)
GO_REF:0000107		 RGD
Ensembl		 PMID:31444330 GO_REF:0000107 NCBI chr 7:77,505,063...77,679,994
Ensembl chr 7:75,620,484...75,795,335 		JBrowse link
G Strc stereocilin is_active_in
located_in		 IBA
ISO
IEA		 GO_REF:0000033
(PMID:18849963), (PMID:21165971), (PMID:24920589), (PMID:31448880)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:18849963 PMID:21165971 PMID:24920589 PMID:31448880 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:128,785,817...128,811,773
Ensembl chr 3:108,335,747...108,354,134 		JBrowse link
G Tmc1 transmembrane channel-like 1 located_in ISO
IEA		 (PMID:22105175)
GO_REF:0000107		 RGD
Ensembl		 PMID:22105175 GO_REF:0000107 NCBI chr 1:227,701,781...227,872,534
Ensembl chr 1:218,276,417...218,445,955 		JBrowse link
G Tmc2 transmembrane channel-like 2 located_in ISO
IEA		 (PMID:22105175)
GO_REF:0000107		 RGD
Ensembl		 PMID:22105175 GO_REF:0000107 NCBI chr 3:137,849,513...137,917,462
Ensembl chr 3:117,396,378...117,464,336 		JBrowse link
G Ush1c USH1 protein network component harmonin is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:105,831,719...105,880,082
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
G Whrn whirlin located_in
is_active_in		 IDA
IEA
IBA
ISO		 PMID:23055499
GO_REF:0000107
GO_REF:0000033
(PMID:24334608), (PMID:31448880)		 Ensembl
GO_Central
RGD		 PMID:24334608 PMID:31448880 PMID:23055499 GO_REF:0000033 GO_REF:0000107, RGD:13800540 NCBI chr 5:81,843,820...81,933,400
Ensembl chr 5:76,828,301...76,912,223 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      stereocilium tip 21
Path 2
Term Annotations click to browse term
  cellular_component 21366
    cellular anatomical structure 21071
      cell projection 2814
        plasma membrane bounded cell projection 2724
          neuron projection 1630
            stereocilium 68
              stereocilium tip 21
paths to the root