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ONTOLOGY REPORT - ANNOTATIONS

Term:small nuclear ribonucleoprotein complex
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Accession:GO:0030532 term browser browse the term
Definition:A ribonucleoprotein complex that contains at least one RNA of the small nuclear RNA (snRNA) class and as well as its associated proteins. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP, U4/U6 snRNP, or 7SK snRNP. Many, of these complexes become part of the spliceosome involved in splicing of nuclear mRNAs. Others are involved in regulation of transcription elongation or 3'-end processing of replication-dependent histone pre-mRNAs.
Synonyms:exact_synonym: small nuclear ribonucleoprotein;   snRNP
 xref: Wikipedia:SnRNP


show annotations for term's descendants           Sort by:
small nuclear ribonucleoprotein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFGEF1 ADP ribosylation factor guanine nucleotide exchange factor 1 part_of IDA (PMID:18292223) UniProt PMID:18292223 NCBI chr 8:67,173,511...67,343,781
Ensembl chr 8:67,173,511...67,343,781 		JBrowse link
G GEMIN4 gem nuclear organelle associated protein 4 part_of TAS (PMID:10725331) PINC PMID:10725331 NCBI chr17:744,421...754,410
Ensembl chr17:744,421...753,999 		JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of TAS (PMID:10523320) UniProt PMID:10523320 NCBI chr 4:146,175,718...146,191,535
Ensembl chr 4:146,175,703...146,200,000 		JBrowse link
G PRPF8 pre-mRNA processing factor 8 part_of ISO
IEA		 RGD
Ensembl		 PMID:1707521 GO_REF:0000107 RGD:10045883 NCBI chr17:1,650,629...1,684,867
Ensembl chr17:1,650,629...1,684,867 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 part_of ISO (PMID:20153721) MGI PMID:20153721 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,079 		JBrowse link
G SLU7 SLU7 homolog, splicing factor part_of IDA (PMID:15181151) HGNC-UCL PMID:15181151 NCBI chr 5:160,401,641...160,419,081
Ensembl chr 5:160,401,641...160,421,711 		JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A part_of IEA UniProt GO_REF:0000117 NCBI chr19:40,751,203...40,765,389
Ensembl chr19:40,750,637...40,765,389 		JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' part_of TAS (PMID:2928112) PINC PMID:2928112 NCBI chr15:101,281,510...101,295,248
Ensembl chr15:101,281,510...101,295,282 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of TAS (PMID:2531083) PINC PMID:2531083 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 ISO RGD PMID:1707521 RGD:10045883 NCBI chr20:16,730,026...16,742,564
Ensembl chr20:16,729,961...16,742,564 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of TAS (PMID:7527560) PINC PMID:7527560 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide part_of TAS
IEA		 (PMID:1701240) PINC
InterPro		 PMID:1701240 GO_REF:0000002 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of TAS (PMID:1701240) PINC PMID:1701240 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of NAS (PMID:2974536) UniProt PMID:2974536 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of IDA (PMID:11991638) UniProt PMID:11991638 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of NAS (PMID:7744013) UniProt PMID:7744013 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of TAS (PMID:7512861) UniProt PMID:7512861 NCBI chr15:24,823,637...24,978,723
Ensembl chr15:24,823,637...24,978,723 		JBrowse link
G SNURF SNRPN upstream open reading frame part_of TAS (PMID:7512861) UniProt PMID:7512861 NCBI chr15:24,954,987...24,978,723
Ensembl chr15:24,954,987...24,977,850 		JBrowse link
G TGS1 trimethylguanosine synthase 1 part_of IC (PMID:16687569) BHF-UCL PMID:16687569 NCBI chr 8:55,773,446...55,826,445
Ensembl chr 8:55,773,446...55,826,445 		JBrowse link
7SK snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HEXIM1 HEXIM P-TEFb complex subunit 1 part_of IDA (PMID:18249148), (PMID:18483487), (PMID:28431135) FlyBase PMID:18249148 PMID:18483487 PMID:28431135 NCBI chr17:45,148,475...45,152,099
Ensembl chr17:45,148,475...45,152,099 		JBrowse link
G LARP7 La ribonucleoprotein 7, transcriptional regulator part_of IDA (PMID:18249148), (PMID:18483487), (PMID:28431135) FlyBase PMID:18249148 PMID:18483487 PMID:28431135 NCBI chr 4:112,637,143...112,657,586
Ensembl chr 4:112,637,077...112,657,696 		JBrowse link
G MEPCE methylphosphate capping enzyme part_of IDA (PMID:17643375), (PMID:28431135) FlyBase PMID:17643375 PMID:28431135 NCBI chr 7:100,428,790...100,434,118
Ensembl chr 7:100,428,322...100,434,126 		JBrowse link
G RN7SK RNA component of 7SK nuclear ribonucleoprotein part_of IDA (PMID:18249148), (PMID:18483487), (PMID:28431135) FlyBase PMID:18249148 PMID:18483487 PMID:28431135 NCBI chr 6:52,995,620...52,995,951
Ensembl chr 6:52,995,620...52,995,950
Ensembl chr 6:52,995,620...52,995,950 		JBrowse link
spliceosomal snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 part_of IDA (PMID:25383878) UniProt PMID:25383878 NCBI chr 9:113,275,658...113,292,905
Ensembl chr 9:113,275,642...113,294,009 		JBrowse link
spliceosomal tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_Central GO_REF:0000033 NCBI chr19:18,306,236...18,323,076
Ensembl chr19:18,306,236...18,323,112 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_Central GO_REF:0000033 NCBI chr19:2,321,521...2,328,586
Ensembl chr19:2,321,520...2,328,611 		JBrowse link
G PRPF31 pre-mRNA processing factor 31 part_of IBA GO_Central GO_REF:0000033 NCBI chr19:54,115,754...54,131,713
Ensembl chr19:54,115,410...54,131,719 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of IBA GO_Central GO_REF:0000033 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of IBA GO_Central GO_REF:0000033 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of IBA GO_Central GO_REF:0000033 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 part_of IBA GO_Central GO_REF:0000033 NCBI chr19:14,489,297...14,489,890
Ensembl chr19:14,489,388...14,489,609 		JBrowse link
U1 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FMC1-LUC7L2 FMC1-LUC7L2 readthrough part_of IEA InterPro GO_REF:0000002 NCBI chr 7:139,341,337...139,423,454
Ensembl chr 7:139,341,360...139,422,599 		JBrowse link
G LUC7L LUC7 like part_of IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr16:188,990...229,449
Ensembl chr16:188,969...229,463 		JBrowse link
G LUC7L2 LUC7 like 2, pre-mRNA splicing factor part_of IEA
IBA		 InterPro
TreeGrafter
GO_Central		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:139,340,472...139,423,454
Ensembl chr 7:139,340,359...139,423,457 		JBrowse link
G LUC7L3 LUC7 like 3 pre-mRNA splicing factor part_of IEA
IBA		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr17:50,719,603...50,756,219
Ensembl chr17:50,719,565...50,756,219 		JBrowse link
G PRPF39 pre-mRNA processing factor 39 part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr14:45,084,116...45,116,282
Ensembl chr14:45,084,107...45,116,282 		JBrowse link
G PRPF40A pre-mRNA processing factor 40 homolog A part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:152,651,732...152,718,019
Ensembl chr 2:152,651,593...152,718,012 		JBrowse link
G PRPF40B pre-mRNA processing factor 40 homolog B part_of IBA GO_Central GO_REF:0000033 NCBI chr12:49,622,646...49,644,665
Ensembl chr12:49,568,218...49,644,666 		JBrowse link
G RNU1-1 RNA, U1 small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:16,514,122...16,514,285
Ensembl chr 1:16,514,122...16,514,285 		JBrowse link
G RNU1-2 RNA, U1 small nuclear 2 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:16,895,980...16,896,143
Ensembl chr 1:16,895,980...16,896,143 		JBrowse link
G RNU1-3 RNA, U1 small nuclear 3 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:16,666,785...16,666,948
Ensembl chr 1:16,666,785...16,666,948 		JBrowse link
G RNU1-4 RNA, U1 small nuclear 4 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:16,740,516...16,740,679
Ensembl chr 1:16,740,516...16,740,679 		JBrowse link
G RNVU1-14 RNA, variant U1 small nuclear 14 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:145,281,116...145,281,279
Ensembl chr 1:145,281,116...145,281,279 		JBrowse link
G RNVU1-15 RNA, variant U1 small nuclear 15 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:144,412,576...144,412,740
Ensembl chr 1:144,412,576...144,412,740 		JBrowse link
G RNVU1-17 RNA, variant U1 small nuclear 17 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:143,699,456...143,699,619
Ensembl chr 1:143,699,456...143,699,619 		JBrowse link
G RNVU1-18 RNA, variant U1 small nuclear 18 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:143,729,407...143,729,570
Ensembl chr 1:143,729,407...143,729,570 		JBrowse link
G RNVU1-19 RNA, variant U1 small nuclear 19 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:120,850,819...120,850,985
Ensembl chr 1:120,850,819...120,850,985 		JBrowse link
G RNVU1-20 RNA, variant U1 small nuclear 20 part_of IEA RNAcentral GO_REF:0000115
G RNVU1-27 RNA, variant U1 small nuclear 27 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:148,522,601...148,522,765
Ensembl chr 1:148,522,601...148,522,765 		JBrowse link
G RNVU1-28 RNA, variant U1 small nuclear 28 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:144,560,666...144,560,829
Ensembl chr 1:144,560,666...144,560,829 		JBrowse link
G RNVU1-2A RNA, variant U1 small nuclear 2A part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:144,551,779...144,551,943
Ensembl chr 1:144,551,779...144,551,943 		JBrowse link
G RNVU1-3 RNA, variant U1 small nuclear 3 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:148,402,715...148,402,875
Ensembl chr 1:148,402,715...148,402,875 		JBrowse link
G RNVU1-31 RNA, variant U1 small nuclear 31 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:145,465,617...145,465,780
Ensembl chr 1:145,465,617...145,465,780 		JBrowse link
G RNVU1-4 RNA, variant U1 small nuclear 4 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:120,942,600...120,942,763
Ensembl chr 1:120,942,600...120,942,763 		JBrowse link
G RNVU1-6 RNA, variant U1 small nuclear 6 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:146,052,081...146,052,244
Ensembl chr 1:146,052,081...146,052,244 		JBrowse link
G RNVU1-7 RNA, variant U1 small nuclear 7 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:148,038,753...148,038,916
Ensembl chr 1:148,038,753...148,038,916 		JBrowse link
G RNVU1-8 RNA, variant U1 small nuclear 8 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:147,084,616...147,084,756
Ensembl chr 1:147,084,616...147,084,756 		JBrowse link
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 part_of
located_in		 ISO
IEA
IBA
IPI
IDA		 (PMID:33677607)
(PMID:21113136), (PMID:23793891), (PMID:25555158)		 RGD
TreeGrafter
GO_Central
ComplexPortal
UniProt		 PMID:16502463 PMID:21113136 PMID:23793891 PMID:25555158 PMID:33677607 GO_REF:0000033 GO_REF:0000118 RGD:10448962 NCBI chr19:49,085,451...49,108,604
Ensembl chr19:49,085,419...49,108,605 		JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A part_of
located_in		 ISO
IEA
IBA
IPI
IDA		 (PMID:33677607)
(PMID:21113136), (PMID:23793891)		 RGD
TreeGrafter
GO_Central
ComplexPortal
CAFA
Ensembl		 PMID:16502463 PMID:21113136 PMID:23793891 PMID:33677607 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:10448962 NCBI chr19:40,751,203...40,765,389
Ensembl chr19:40,750,637...40,765,389 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of
located_in		 ISO
IEA
IBA
NAS
IPI
IDA		 (PMID:15564372)
(PMID:33677607)
(PMID:21113136), (PMID:25555158)		 RGD
TreeGrafter
GO_Central
ComplexPortal
UniProt
Ensembl		 PMID:8371979 PMID:15564372 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1601359 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr20:16,730,026...16,742,564
Ensembl chr20:16,729,961...16,742,564 		JBrowse link
G SNRPC small nuclear ribonucleoprotein polypeptide C part_of
located_in		 ISO
IBA
IEA
IPI
IDA		 (PMID:33677607)
(PMID:15312772), (PMID:15525645), (PMID:21113136)		 RGD
GO_Central
TreeGrafter
ComplexPortal
UniProt
InterPro		 PMID:15312772 PMID:15525645 PMID:16502463 PMID:21113136 PMID:33677607 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 RGD:10448962 NCBI chr 6:34,757,505...34,773,857
Ensembl chr 6:34,757,505...34,773,857 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of
located_in		 ISO
IBA
NAS
IPI
IDA		 (PMID:15564372)
(PMID:33677607)
(PMID:21113136), (PMID:25555158)		 RGD
GO_Central
ComplexPortal
UniProt		 PMID:15564372 PMID:16502463 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 RGD:10448962 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide part_of
located_in		 ISO
IBA
NAS
IPI
IDA		 (PMID:15564372)
(PMID:33677607)
(PMID:21113136), (PMID:25555158)		 RGD
GO_Central
ComplexPortal
UniProt		 PMID:15564372 PMID:16502463 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 RGD:10448962 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of
located_in		 ISO
IBA
IEA
NAS
IPI
IDA		 (PMID:15564372)
(PMID:33677607)
(PMID:21113136), (PMID:25555158)		 RGD
GO_Central
Ensembl
ComplexPortal
UniProt		 PMID:15564372 PMID:16502463 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 GO_REF:0000107 RGD:10448962 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of
located_in		 ISO
IBA
NAS
IPI
IEA
IDA		 (PMID:15564372)
(PMID:33677607)
(PMID:21113136), (PMID:25555158)		 RGD
GO_Central
ComplexPortal
UniProt		 PMID:15564372 PMID:16502463 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 GO_REF:0000104 RGD:10448962 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of
located_in		 IDA
IBA
NAS
IPI		 (PMID:21113136), (PMID:25555158)
(PMID:15564372)
(PMID:33677607)		 UniProt
GO_Central
ComplexPortal		 PMID:15564372 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of
located_in		 ISO
IBA
NAS
IPI
IDA		 (PMID:15564372)
(PMID:33677607)
(PMID:21113136), (PMID:25555158)		 RGD
GO_Central
ComplexPortal
UniProt		 PMID:15564372 PMID:16502463 PMID:21113136 PMID:25555158 PMID:33677607 GO_REF:0000033 RGD:10448962 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 part_of IBA GO_Central GO_REF:0000033 NCBI chr19:14,489,297...14,489,890
Ensembl chr19:14,489,388...14,489,609 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:8371979 GO_REF:0000033 GO_REF:0000118 RGD:1601359 NCBI chr15:24,823,637...24,978,723
Ensembl chr15:24,823,637...24,978,723 		JBrowse link
G SNURF SNRPN upstream open reading frame part_of IBA GO_Central GO_REF:0000033 NCBI chr15:24,954,987...24,978,723
Ensembl chr15:24,954,987...24,977,850 		JBrowse link
G WEE2-AS1 WEE2 antisense RNA 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 7:141,704,338...141,738,230
Ensembl chr 7:141,704,003...141,738,346 		JBrowse link
U11 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNU11 RNA, U11 small nuclear part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:28,648,600...28,648,734
Ensembl chr 1:28,648,600...28,648,733 		JBrowse link
G TAF12-DT TAF12 divergent transcript part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:28,643,256...28,648,801
Ensembl chr 1:28,643,228...28,648,581 		JBrowse link
U11/U12 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SF3B1 splicing factor 3b subunit 1 part_of IDA (PMID:11252167) MGI PMID:11252167 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,079 		JBrowse link
U12 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNU12 RNA, U12 small nuclear part_of IEA RNAcentral GO_REF:0000115 NCBI chr22:42,615,244...42,615,393
Ensembl chr22:42,615,244...42,615,393 		JBrowse link
U2 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BUD13 BUD13 homolog located_in NAS (PMID:31744343) ComplexPortal PMID:31744343 NCBI chr11:116,748,173...116,772,987
Ensembl chr11:116,748,170...116,772,987 		JBrowse link
G DDX46 DEAD-box helicase 46 located_in NAS (PMID:31744343) ComplexPortal PMID:31744343 NCBI chr 5:134,758,779...134,831,121
Ensembl chr 5:134,758,771...134,855,133 		JBrowse link
G HTATSF1 HIV-1 Tat specific factor 1 located_in
part_of		 NAS
IEA
IBA		 (PMID:31744343) ComplexPortal
TreeGrafter
GO_Central		 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:136,497,229...136,512,346
Ensembl chr  X:136,497,079...136,512,346 		JBrowse link
G LOC100128988 uncharacterized LOC100128988 part_of IEA RNAcentral GO_REF:0000115 NCBI chr20:40,980,713...41,025,396 JBrowse link
G OVAAL ovarian adenocarcinoma amplified long non-coding RNA part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:180,558,964...180,566,518
Ensembl chr 1:180,509,380...180,566,523 		JBrowse link
G PHF5A PHD finger protein 5A part_of
located_in		 IDA
IBA
NAS		 (PMID:12234937)
(PMID:31744343)		 UniProt
GO_Central
ComplexPortal		 PMID:12234937 PMID:31744343 GO_REF:0000033 NCBI chr22:41,459,717...41,468,692
Ensembl chr22:41,459,717...41,468,692 		JBrowse link
G RBMX2 RNA binding motif protein X-linked 2 located_in
part_of		 NAS
IEA
IBA		 (PMID:31744343) ComplexPortal
TreeGrafter
GO_Central		 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr  X:130,401,987...130,413,656
Ensembl chr  X:130,401,987...130,413,656 		JBrowse link
G RNU2-1 RNA, U2 small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr17:43,233,790...43,233,977
Ensembl chr17:43,233,787...43,233,977 		JBrowse link
G SF3A1 splicing factor 3a subunit 1 part_of
located_in		 IDA
IBA
IEA
NAS		 (PMID:10882114), (PMID:11533230), (PMID:23793891)
(PMID:31744343)		 CAFA
GO_Central
TreeGrafter
ComplexPortal		 PMID:10882114 PMID:11533230 PMID:23793891 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr22:30,331,988...30,356,894
Ensembl chr22:30,331,988...30,356,919 		JBrowse link
G SF3A2 splicing factor 3a subunit 2 part_of
located_in		 IDA
IBA
IEA
NAS		 (PMID:11533230)
(PMID:31744343)		 UniProt
GO_Central
TreeGrafter
ComplexPortal		 PMID:11533230 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr19:2,236,824...2,248,655
Ensembl chr19:2,236,824...2,248,655 		JBrowse link
G SF3A3 splicing factor 3a subunit 3 part_of
located_in		 IDA
NAS		 (PMID:11533230)
(PMID:31744343)		 UniProt
ComplexPortal		 PMID:11533230 PMID:31744343 NCBI chr 1:37,956,975...37,990,022
Ensembl chr 1:37,956,975...37,990,075 		JBrowse link
G SF3B1 splicing factor 3b subunit 1 part_of
located_in		 IDA
IBA
IEA
NAS		 (PMID:11252167)
(PMID:31744343)		 MGI
GO_Central
TreeGrafter
ComplexPortal		 PMID:11252167 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr 2:197,389,784...197,435,093
Ensembl chr 2:197,388,515...197,435,079 		JBrowse link
G SF3B2 splicing factor 3b subunit 2 located_in
part_of		 NAS
IBA		 (PMID:31744343) ComplexPortal
GO_Central		 PMID:31744343 GO_REF:0000033 NCBI chr11:66,052,364...66,069,308
Ensembl chr11:66,050,729...66,069,308 		JBrowse link
G SF3B3 splicing factor 3b subunit 3 located_in
part_of		 NAS
IBA
IEA		 (PMID:31744343) ComplexPortal
GO_Central
TreeGrafter		 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr16:70,523,816...70,577,668
Ensembl chr16:70,523,791...70,577,670 		JBrowse link
G SF3B4 splicing factor 3b subunit 4 located_in
part_of		 NAS
IEA
IBA		 (PMID:31744343) ComplexPortal
TreeGrafter
GO_Central		 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:149,923,317...149,927,803
Ensembl chr 1:149,923,317...149,927,803 		JBrowse link
G SF3B5 splicing factor 3b subunit 5 located_in
part_of		 NAS
IBA		 (PMID:31744343) ComplexPortal
GO_Central		 PMID:31744343 GO_REF:0000033 NCBI chr 6:144,094,884...144,095,573
Ensembl chr 6:144,094,884...144,095,573 		JBrowse link
G SF3B6 splicing factor 3b subunit 6 located_in
part_of		 NAS
IBA		 (PMID:31744343) ComplexPortal
GO_Central		 PMID:31744343 GO_REF:0000033 NCBI chr 2:24,067,586...24,076,326
Ensembl chr 2:24,067,586...24,076,373 		JBrowse link
G SNIP1 Smad nuclear interacting protein 1 located_in NAS (PMID:31744343) ComplexPortal PMID:31744343 NCBI chr 1:37,534,449...37,554,293
Ensembl chr 1:37,534,449...37,554,293 		JBrowse link
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' part_of
located_in		 TAS
IBA
IEA
NAS		 (PMID:2928112)
(PMID:31744343)		 PINC
GO_Central
TreeGrafter
ComplexPortal		 PMID:2928112 PMID:31744343 GO_REF:0000033 GO_REF:0000118 NCBI chr15:101,281,510...101,295,248
Ensembl chr15:101,281,510...101,295,282 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of
located_in		 ISO
IEA
IBA
NAS		 (PMID:15564372), (PMID:31744343) RGD
TreeGrafter
GO_Central
ComplexPortal
Ensembl		 PMID:8371979 PMID:15564372 PMID:31744343 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:1601359 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 part_of
located_in		 IDA
NAS		 (PMID:2951739)
(PMID:31744343)		 GO_Central
ComplexPortal		 PMID:2951739 PMID:31744343 NCBI chr20:16,730,026...16,742,564
Ensembl chr20:16,729,961...16,742,564 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide located_in
part_of		 NAS
IBA		 (PMID:15564372), (PMID:31744343) ComplexPortal
GO_Central		 PMID:15564372 PMID:31744343 GO_REF:0000033 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide located_in
part_of		 NAS
IBA		 (PMID:15564372), (PMID:31744343) ComplexPortal
GO_Central		 PMID:15564372 PMID:31744343 GO_REF:0000033 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide located_in
part_of		 NAS
IBA		 (PMID:15564372), (PMID:31744343) ComplexPortal
GO_Central		 PMID:15564372 PMID:31744343 GO_REF:0000033 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of
located_in		 IEA
IBA
NAS		 (PMID:15564372), (PMID:31744343) UniProt
GO_Central
ComplexPortal		 PMID:15564372 PMID:31744343 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F located_in NAS (PMID:15564372), (PMID:31744343) ComplexPortal PMID:15564372 PMID:31744343 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G located_in
part_of		 NAS
IBA		 (PMID:15564372), (PMID:31744343) ComplexPortal
GO_Central		 PMID:15564372 PMID:31744343 GO_REF:0000033 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 part_of IBA GO_Central GO_REF:0000033 NCBI chr19:14,489,297...14,489,890
Ensembl chr19:14,489,388...14,489,609 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central		 PMID:8371979 GO_REF:0000033 GO_REF:0000118 RGD:1601359 NCBI chr15:24,823,637...24,978,723
Ensembl chr15:24,823,637...24,978,723 		JBrowse link
G SNURF SNRPN upstream open reading frame part_of IBA GO_Central GO_REF:0000033 NCBI chr15:24,954,987...24,978,723
Ensembl chr15:24,954,987...24,977,850 		JBrowse link
U4 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX39B DExD-box helicase 39B part_of IDA (PMID:18593880) BHF-UCL PMID:18593880 NCBI chr 6:31,530,226...31,542,003
Ensembl chr 6:31,530,219...31,542,448 		JBrowse link
G PRPF31 pre-mRNA processing factor 31 part_of IDA
IBA		 (PMID:17412961) BHF-UCL
GO_Central		 PMID:17412961 GO_REF:0000033 NCBI chr19:54,115,754...54,131,713
Ensembl chr19:54,115,410...54,131,719 		JBrowse link
G RNU4-1 RNA, U4 small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr12:120,293,094...120,293,237
Ensembl chr12:120,293,097...120,293,237 		JBrowse link
G RNU4-2 RNA, U4 small nuclear 2 part_of IEA RNAcentral GO_REF:0000115 NCBI chr12:120,291,763...120,291,903
Ensembl chr12:120,291,763...120,291,903 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of
located_in		 IDA
IEA
IBA
NAS		 (PMID:21516107)
(PMID:15564372)		 UniProt
TreeGrafter
GO_Central
ComplexPortal		 PMID:15564372 PMID:21516107 GO_REF:0000033 GO_REF:0000118 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of
located_in		 IDA
IBA
NAS		 (PMID:21516107)
(PMID:15564372)		 UniProt
GO_Central
ComplexPortal		 PMID:15564372 PMID:21516107 GO_REF:0000033 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide part_of
located_in		 IDA
NAS		 (PMID:21516107)
(PMID:15564372)		 UniProt
ComplexPortal		 PMID:15564372 PMID:21516107 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of
located_in		 IDA
IBA
NAS		 (PMID:21516107)
(PMID:15564372)		 UniProt
GO_Central
ComplexPortal		 PMID:15564372 PMID:21516107 GO_REF:0000033 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of
located_in		 IDA
IBA
NAS
IEA		 (PMID:21516107)
(PMID:15564372)		 UniProt
GO_Central
ComplexPortal		 PMID:15564372 PMID:21516107 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of
located_in		 IDA
NAS		 (PMID:21516107)
(PMID:15564372)		 UniProt
ComplexPortal		 PMID:15564372 PMID:21516107 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of
located_in		 IDA
IBA
NAS		 (PMID:21516107)
(PMID:15564372)		 UniProt
GO_Central
ComplexPortal		 PMID:15564372 PMID:21516107 GO_REF:0000033 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 part_of IBA GO_Central GO_REF:0000033 NCBI chr19:14,489,297...14,489,890
Ensembl chr19:14,489,388...14,489,609 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:24,823,637...24,978,723
Ensembl chr15:24,823,637...24,978,723 		JBrowse link
G SNURF SNRPN upstream open reading frame part_of IBA GO_Central GO_REF:0000033 NCBI chr15:24,954,987...24,978,723
Ensembl chr15:24,954,987...24,977,850 		JBrowse link
U4/U6 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PPIH peptidylprolyl isomerase H part_of IDA (PMID:9570313) BHF-UCL PMID:9570313 NCBI chr 1:42,658,423...42,681,654
Ensembl chr 1:42,658,335...42,676,758 		JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 part_of IDA (PMID:25383878), (PMID:9570313) UniProt PMID:9570313 PMID:25383878 NCBI chr 9:113,275,658...113,292,905
Ensembl chr 9:113,275,642...113,294,009 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein located_in IDA (PMID:12032085) UniProt PMID:12032085 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400 		JBrowse link
U4/U6 x U5 tri-snRNP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CD2BP2 CD2 cytoplasmic tail binding protein 2 NOT|part_of IDA (PMID:15840814) BHF-UCL PMID:15840814 NCBI chr16:30,350,773...30,355,308
Ensembl chr16:30,350,773...30,355,308 		JBrowse link
G DDX23 DEAD-box helicase 23 part_of
located_in		 IDA
IPI		 (PMID:9409622)
(PMID:30975767)		 MGI
ComplexPortal		 PMID:9409622 PMID:30975767 NCBI chr12:48,829,756...48,852,163
Ensembl chr12:48,829,756...48,852,842 		JBrowse link
G EFTUD2 elongation factor Tu GTP binding domain containing 2 part_of
located_in		 IDA
IEA
IBA
IPI		 (PMID:23793891)
(PMID:30975767)		 CAFA
TreeGrafter
GO_Central
ComplexPortal		 PMID:23793891 PMID:30975767 GO_REF:0000033 GO_REF:0000118 NCBI chr17:44,849,948...44,899,445
Ensembl chr17:44,849,948...44,899,445 		JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IDA
IBA
IPI		 (PMID:10523320), (PMID:26912367)
(PMID:30975767)		 MGI
GO_Central
ComplexPortal		 PMID:10523320 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr 6:31,797,396...31,806,966
Ensembl chr 6:31,797,396...31,806,966 		JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IEA
IBA
IPI
IDA		 (PMID:30975767)
(PMID:10369684), (PMID:10523320), (PMID:26912367)		 UniProt
TreeGrafter
GO_Central
ComplexPortal
MGI		 PMID:10369684 PMID:10523320 PMID:26912367 PMID:30975767 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr 3:14,178,817...14,201,122
Ensembl chr 3:14,178,817...14,201,122 		JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IDA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr19:18,306,236...18,323,076
Ensembl chr19:18,306,236...18,323,112 		JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IDA
IEA
IBA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
TreeGrafter
GO_Central
ComplexPortal		 PMID:26912367 PMID:30975767 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:32,485,338...32,495,283
Ensembl chr 7:32,485,338...32,495,283 		JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IDA
IBA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
GO_Central
ComplexPortal		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr 4:146,175,718...146,191,535
Ensembl chr 4:146,175,703...146,200,000 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of
located_in		 IDA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr19:2,321,521...2,328,586
Ensembl chr19:2,321,520...2,328,611 		JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated part_of
located_in		 IEA
IBA
IPI
IDA		 (PMID:30975767)
(PMID:26912367)		 InterPro
TreeGrafter
GO_Central
ComplexPortal
UniProt		 PMID:26912367 PMID:30975767 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr 7:118,184,164...118,204,035
Ensembl chr 7:118,184,144...118,204,035 		JBrowse link
G PPIH peptidylprolyl isomerase H part_of IDA (PMID:9570313) BHF-UCL PMID:9570313 NCBI chr 1:42,658,423...42,681,654
Ensembl chr 1:42,658,335...42,676,758 		JBrowse link
G PRPF18 pre-mRNA processing factor 18 part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:13,586,965...13,655,929
Ensembl chr10:13,586,939...13,668,445 		JBrowse link
G PRPF3 pre-mRNA processing factor 3 part_of IEA
IBA
IDA		 (PMID:26912367) InterPro
TreeGrafter
GO_Central
UniProt		 PMID:26912367 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:150,321,468...150,353,233
Ensembl chr 1:150,321,479...150,353,233 		JBrowse link
G PRPF31 pre-mRNA processing factor 31 part_of
located_in		 IEA
IPI
IDA		 (PMID:30975767)
(PMID:11867543), (PMID:23793891), (PMID:26912367)		 InterPro
ComplexPortal
MGI		 PMID:11867543 PMID:23793891 PMID:26912367 PMID:30975767 GO_REF:0000002 NCBI chr19:54,115,754...54,131,713
Ensembl chr19:54,115,410...54,131,719 		JBrowse link
G PRPF4 pre-mRNA splicing tri-snRNP complex factor PRPF4 part_of
located_in		 IDA
IEA
IBA
IPI		 (PMID:23793891)
(PMID:30975767)		 CAFA
TreeGrafter
GO_Central
ComplexPortal		 PMID:23793891 PMID:30975767 GO_REF:0000033 GO_REF:0000118 NCBI chr 9:113,275,658...113,292,905
Ensembl chr 9:113,275,642...113,294,009 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 part_of
located_in		 IDA
IBA
IPI		 (PMID:10788320)
(PMID:30975767)		 BHF-UCL
GO_Central
ComplexPortal		 PMID:10788320 PMID:30975767 GO_REF:0000033 NCBI chr20:63,981,132...64,033,100
Ensembl chr20:63,981,132...64,033,100 		JBrowse link
G PRPF8 pre-mRNA processing factor 8 part_of
located_in		 IDA
IPI		 (PMID:23793891)
(PMID:30975767)		 CAFA
ComplexPortal		 PMID:23793891 PMID:30975767 NCBI chr17:1,650,629...1,684,867
Ensembl chr17:1,650,629...1,684,867 		JBrowse link
G RBM42 RNA binding motif protein 42 located_in IPI (PMID:30975767) ComplexPortal PMID:30975767 NCBI chr19:35,629,036...35,637,685
Ensembl chr19:35,629,030...35,637,686 		JBrowse link
G RNU4-1 RNA, U4 small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr12:120,293,094...120,293,237
Ensembl chr12:120,293,097...120,293,237 		JBrowse link
G RNU4-2 RNA, U4 small nuclear 2 part_of IEA RNAcentral GO_REF:0000115 NCBI chr12:120,291,763...120,291,903
Ensembl chr12:120,291,763...120,291,903 		JBrowse link
G RNU5A-1 RNA, U5A small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr15:65,296,051...65,296,167
Ensembl chr15:65,296,051...65,296,166 		JBrowse link
G RNU5B-1 RNA, U5B small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr15:65,304,677...65,304,793
Ensembl chr15:65,304,677...65,304,792 		JBrowse link
G RNU5D-1 RNA, U5D small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:44,731,069...44,731,168
Ensembl chr 1:44,731,055...44,731,170 		JBrowse link
G RNU5E-1 RNA, U5E small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:11,908,154...11,908,272
Ensembl chr 1:11,908,152...11,908,271 		JBrowse link
G RNU5F-1 RNA, U5F small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:44,721,786...44,721,901
Ensembl chr 1:44,721,786...44,721,902 		JBrowse link
G RNU6-1 RNA, U6 small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr15:67,839,940...67,840,045
Ensembl chr15:67,839,939...67,840,045 		JBrowse link
G RNU6-2 RNA, U6 small nuclear 2 part_of IEA RNAcentral GO_REF:0000115 NCBI chr19:1,021,522...1,021,628
Ensembl chr19:1,021,522...1,021,628 		JBrowse link
G RNU6-7 RNA, U6 small nuclear 7 part_of IEA RNAcentral GO_REF:0000115 NCBI chr14:32,202,045...32,202,151
Ensembl chr14:32,202,045...32,202,151 		JBrowse link
G RNU6-8 RNA, U6 small nuclear 8 part_of IEA RNAcentral GO_REF:0000115 NCBI chr14:32,203,163...32,203,269
Ensembl chr14:32,203,163...32,203,269 		JBrowse link
G RNU6-9 RNA, U6 small nuclear 9 part_of IEA RNAcentral GO_REF:0000115 NCBI chr19:893,484...893,590
Ensembl chr19:893,484...893,590 		JBrowse link
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP part_of
located_in		 IEA
IBA
IPI		 (PMID:30975767) InterPro
TreeGrafter
GO_Central
ComplexPortal		 PMID:30975767 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr11:65,961,734...65,980,137
Ensembl chr11:65,961,728...65,980,137 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein NOT|located_in IDA (PMID:12032085) UniProt PMID:12032085 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400 		JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 part_of
located_in		 IDA
IPI		 (PMID:23793891)
(PMID:30975767)		 CAFA
ComplexPortal		 PMID:23793891 PMID:30975767 NCBI chr 2:96,274,338...96,305,546
Ensembl chr 2:96,274,338...96,321,271 		JBrowse link
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 located_in IPI (PMID:30975767) ComplexPortal PMID:30975767 NCBI chr 2:69,893,956...69,905,236
Ensembl chr 2:69,893,956...69,905,575 		JBrowse link
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 located_in IPI (PMID:30975767) ComplexPortal PMID:30975767 NCBI chr 1:31,259,568...31,296,788
Ensembl chr 1:31,259,568...31,296,788 		JBrowse link
G SNRPA small nuclear ribonucleoprotein polypeptide A located_in IPI (PMID:30975767) ComplexPortal PMID:30975767 NCBI chr19:40,751,203...40,765,389
Ensembl chr19:40,750,637...40,765,389 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of
located_in		 IDA
IEA
IBA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
TreeGrafter
GO_Central
ComplexPortal		 PMID:26912367 PMID:30975767 GO_REF:0000033 GO_REF:0000118 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide part_of
located_in		 IDA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide part_of
located_in		 IDA
IBA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
GO_Central
ComplexPortal		 PMID:26912367 PMID:30975767 GO_REF:0000033 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of
located_in		 IDA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of
located_in		 IDA
IBA
IPI
IEA		 (PMID:26912367)
(PMID:30975767)		 UniProt
GO_Central
ComplexPortal		 PMID:26912367 PMID:30975767 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of
located_in		 IDA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of
located_in		 IDA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:26912367 PMID:30975767 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:24,823,637...24,978,723
Ensembl chr15:24,823,637...24,978,723 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 part_of
located_in		 IDA
IBA
IEA
IPI		 (PMID:26912367)
(PMID:30975767)		 UniProt
GO_Central
TreeGrafter
ComplexPortal		 PMID:26912367 PMID:30975767 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504 		JBrowse link
G SNURF SNRPN upstream open reading frame part_of IBA GO_Central GO_REF:0000033 NCBI chr15:24,954,987...24,978,723
Ensembl chr15:24,954,987...24,977,850 		JBrowse link
G TXNL4A thioredoxin like 4A part_of
located_in		 IEA
IBA
IPI
IDA		 (PMID:30975767)
(PMID:26912367)		 InterPro
GO_Central
ComplexPortal
UniProt		 PMID:26912367 PMID:30975767 GO_REF:0000002 GO_REF:0000033 NCBI chr18:79,970,813...80,033,936
Ensembl chr18:79,970,813...80,033,949 		JBrowse link
G TXNL4B thioredoxin like 4B part_of IEA
IBA		 InterPro
GO_Central
TreeGrafter		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr16:72,084,857...72,094,378
Ensembl chr16:72,044,289...72,094,431 		JBrowse link
G USP39 ubiquitin specific peptidase 39 part_of
located_in		 IDA
IPI		 (PMID:11350945), (PMID:26912367)
(PMID:30975767)		 UniProt
ComplexPortal		 PMID:11350945 PMID:26912367 PMID:30975767 NCBI chr 2:85,602,861...85,649,283
Ensembl chr 2:85,602,856...85,649,283 		JBrowse link
G ZMAT2 zinc finger matrin-type 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr 5:140,700,447...140,706,686
Ensembl chr 5:140,698,680...140,706,686 		JBrowse link
U4atac snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PRPF31 pre-mRNA processing factor 31 part_of TAS
IDA		 (PMID:17412961)
(PMID:21784869)		 BHF-UCL
UniProt		 PMID:17412961 PMID:21784869 NCBI chr19:54,115,754...54,131,713
Ensembl chr19:54,115,410...54,131,719 		JBrowse link
G RNU4ATAC RNA, U4atac small nuclear part_of IEA RNAcentral GO_REF:0000115 NCBI chr 2:121,530,880...121,531,009
Ensembl chr 2:121,530,881...121,531,007 		JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 part_of IDA (PMID:21784869) UniProt PMID:21784869 NCBI chr22:41,673,933...41,690,480
Ensembl chr22:41,673,933...41,690,504 		JBrowse link
U4atac/U6atac snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SART3 spliceosome associated factor 3, U4/U6 recycling protein NOT|located_in IDA (PMID:14749385) UniProt PMID:14749385 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400 		JBrowse link
U5 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AAR2 AAR2 splicing factor part_of ISS FlyBase GO_REF:0000024 NCBI chr20:36,236,478...36,256,933
Ensembl chr20:36,236,131...36,270,918 		JBrowse link
G CD2BP2 CD2 cytoplasmic tail binding protein 2 part_of IEA
IBA
IDA		 (PMID:15840814) InterPro
TreeGrafter
GO_Central
BHF-UCL		 PMID:15840814 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr16:30,350,773...30,355,308
Ensembl chr16:30,350,773...30,355,308 		JBrowse link
G DDX23 DEAD-box helicase 23 part_of IDA (PMID:9539711) HGNC-UCL PMID:9539711 NCBI chr12:48,829,756...48,852,163
Ensembl chr12:48,829,756...48,852,842 		JBrowse link
G PRPF18 pre-mRNA processing factor 18 part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr10:13,586,965...13,655,929
Ensembl chr10:13,586,939...13,668,445 		JBrowse link
G PRPF6 pre-mRNA processing factor 6 part_of IDA (PMID:10788320) BHF-UCL PMID:10788320 NCBI chr20:63,981,132...64,033,100
Ensembl chr20:63,981,132...64,033,100 		JBrowse link
G PRPF8 pre-mRNA processing factor 8 part_of TAS
IBA		 (PMID:9774689) PINC
GO_Central		 PMID:9774689 GO_REF:0000033 NCBI chr17:1,650,629...1,684,867
Ensembl chr17:1,650,629...1,684,867 		JBrowse link
G RNU5A-1 RNA, U5A small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr15:65,296,051...65,296,167
Ensembl chr15:65,296,051...65,296,166 		JBrowse link
G RNU5B-1 RNA, U5B small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr15:65,304,677...65,304,793
Ensembl chr15:65,304,677...65,304,792 		JBrowse link
G RNU5D-1 RNA, U5D small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:44,731,069...44,731,168
Ensembl chr 1:44,731,055...44,731,170 		JBrowse link
G RNU5E-1 RNA, U5E small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:11,908,154...11,908,272
Ensembl chr 1:11,908,152...11,908,271 		JBrowse link
G RNU5F-1 RNA, U5F small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr 1:44,721,786...44,721,901
Ensembl chr 1:44,721,786...44,721,902 		JBrowse link
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 part_of IDA (PMID:9539711) HGNC-UCL PMID:9539711 NCBI chr 2:96,274,338...96,305,546
Ensembl chr 2:96,274,338...96,321,271 		JBrowse link
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 part_of TAS (PMID:9774689) PINC PMID:9774689 NCBI chr 1:31,259,568...31,296,788
Ensembl chr 1:31,259,568...31,296,788 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 located_in
part_of		 NAS
IEA
IBA		 (PMID:15564372) ComplexPortal
TreeGrafter
GO_Central		 PMID:15564372 GO_REF:0000033 GO_REF:0000118 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide located_in
part_of		 NAS
IBA		 (PMID:15564372) ComplexPortal
GO_Central		 PMID:15564372 GO_REF:0000033 NCBI chr18:21,612,314...21,633,520
Ensembl chr18:21,612,314...21,633,524 		JBrowse link
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide located_in
part_of		 NAS
IBA		 (PMID:15564372) ComplexPortal
GO_Central		 PMID:15564372 GO_REF:0000033 NCBI chr19:45,687,454...45,692,316
Ensembl chr19:45,687,460...45,692,569 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide located_in
part_of		 NAS
IBA		 (PMID:15564372) ComplexPortal
GO_Central		 PMID:15564372 GO_REF:0000033 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of
located_in		 IEA
IBA
NAS		 (PMID:15564372) UniProt
GO_Central
ComplexPortal		 PMID:15564372 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F located_in NAS (PMID:15564372) ComplexPortal PMID:15564372 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G located_in
part_of		 NAS
IBA		 (PMID:15564372) ComplexPortal
GO_Central		 PMID:15564372 GO_REF:0000033 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
G SNRPGP15 small nuclear ribonucleoprotein polypeptide G pseudogene 15 part_of IBA GO_Central GO_REF:0000033 NCBI chr19:14,489,297...14,489,890
Ensembl chr19:14,489,388...14,489,609 		JBrowse link
G SNRPN small nuclear ribonucleoprotein polypeptide N part_of IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr15:24,823,637...24,978,723
Ensembl chr15:24,823,637...24,978,723 		JBrowse link
G SNURF SNRPN upstream open reading frame part_of IBA GO_Central GO_REF:0000033 NCBI chr15:24,954,987...24,978,723
Ensembl chr15:24,954,987...24,977,850 		JBrowse link
G TSSC4 tumor suppressing subtransferable candidate 4 is_active_in IDA (PMID:35188580) UniProt PMID:35188580 NCBI chr11:2,400,750...2,403,876
Ensembl chr11:2,400,488...2,403,878 		JBrowse link
G TXNL4A thioredoxin like 4A part_of IBA GO_Central GO_REF:0000033 NCBI chr18:79,970,813...80,033,936
Ensembl chr18:79,970,813...80,033,949 		JBrowse link
G TXNL4B thioredoxin like 4B part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr16:72,084,857...72,094,378
Ensembl chr16:72,044,289...72,094,431 		JBrowse link
U6 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX39B DExD-box helicase 39B part_of IDA (PMID:18593880) BHF-UCL PMID:18593880 NCBI chr 6:31,530,226...31,542,003
Ensembl chr 6:31,530,219...31,542,448 		JBrowse link
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_Central GO_REF:0000033 NCBI chr 6:31,797,396...31,806,966
Ensembl chr 6:31,797,396...31,806,966 		JBrowse link
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IEA
IBA		 UniProt
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr 3:14,178,817...14,201,122
Ensembl chr 3:14,178,817...14,201,122 		JBrowse link
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated part_of TAS
IBA		 (PMID:10369684) PINC
GO_Central		 PMID:10369684 GO_REF:0000033 NCBI chr19:18,306,236...18,323,076
Ensembl chr19:18,306,236...18,323,112 		JBrowse link
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 7:32,485,338...32,495,283
Ensembl chr 7:32,485,338...32,495,283 		JBrowse link
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_Central GO_REF:0000033 NCBI chr 4:146,175,718...146,191,535
Ensembl chr 4:146,175,703...146,200,000 		JBrowse link
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_Central GO_REF:0000033 NCBI chr19:2,321,521...2,328,586
Ensembl chr19:2,321,520...2,328,611 		JBrowse link
G LSM8 LSM8 homolog, U6 small nuclear RNA associated part_of IEA
IBA		 InterPro
GO_Central
TreeGrafter
UniProt		 GO_REF:0000002 GO_REF:0000033 GO_REF:0000104 GO_REF:0000118 NCBI chr 7:118,184,164...118,204,035
Ensembl chr 7:118,184,144...118,204,035 		JBrowse link
G RNU6-1 RNA, U6 small nuclear 1 part_of IEA RNAcentral GO_REF:0000115 NCBI chr15:67,839,940...67,840,045
Ensembl chr15:67,839,939...67,840,045 		JBrowse link
G RNU6-2 RNA, U6 small nuclear 2 part_of IEA RNAcentral GO_REF:0000115 NCBI chr19:1,021,522...1,021,628
Ensembl chr19:1,021,522...1,021,628 		JBrowse link
G RNU6-7 RNA, U6 small nuclear 7 part_of IEA RNAcentral GO_REF:0000115 NCBI chr14:32,202,045...32,202,151
Ensembl chr14:32,202,045...32,202,151 		JBrowse link
G RNU6-8 RNA, U6 small nuclear 8 part_of IEA RNAcentral GO_REF:0000115 NCBI chr14:32,203,163...32,203,269
Ensembl chr14:32,203,163...32,203,269 		JBrowse link
G RNU6-9 RNA, U6 small nuclear 9 part_of IEA RNAcentral GO_REF:0000115 NCBI chr19:893,484...893,590
Ensembl chr19:893,484...893,590 		JBrowse link
U6atac snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RNU6ATAC RNA, U6atac small nuclear part_of IEA RNAcentral GO_REF:0000115 NCBI chr 9:134,164,440...134,164,564
Ensembl chr 9:134,164,439...134,164,564 		JBrowse link
G SART3 spliceosome associated factor 3, U4/U6 recycling protein located_in IDA (PMID:14749385) UniProt PMID:14749385 NCBI chr12:108,522,214...108,561,173
Ensembl chr12:108,522,214...108,561,400 		JBrowse link
U7 snRNP term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LSM10 LSM10, U7 small nuclear RNA associated part_of IDA (PMID:11574479) UniProt PMID:11574479 NCBI chr 1:36,393,436...36,397,908
Ensembl chr 1:36,391,238...36,397,908 		JBrowse link
G LSM11 LSM11, U7 small nuclear RNA associated part_of ISS
IBA
IEA
IDA		 (PMID:11574479) UniProt
GO_Central
Ensembl		 PMID:11574479 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:157,743,712...157,760,709
Ensembl chr 5:157,743,712...157,760,709 		JBrowse link
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 part_of IDA (PMID:11574479) UniProt PMID:11574479 NCBI chr20:2,461,642...2,470,789
Ensembl chr20:2,461,634...2,470,853 		JBrowse link
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide part_of IDA (PMID:11574479) UniProt PMID:11574479 NCBI chr22:24,555,650...24,574,971
Ensembl chr22:24,555,958...24,582,052 		JBrowse link
G SNRPE small nuclear ribonucleoprotein polypeptide E part_of IDA (PMID:11574479) UniProt PMID:11574479 NCBI chr 1:203,861,599...203,871,152
Ensembl chr 1:203,861,599...203,871,152 		JBrowse link
G SNRPF small nuclear ribonucleoprotein polypeptide F part_of IDA (PMID:11574479) UniProt PMID:11574479 NCBI chr12:95,858,952...95,866,140
Ensembl chr12:95,858,952...95,903,828 		JBrowse link
G SNRPG small nuclear ribonucleoprotein polypeptide G part_of IDA (PMID:11574479) UniProt PMID:11574479 NCBI chr 2:70,281,362...70,293,740
Ensembl chr 2:70,281,362...70,293,740 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20718
    protein-containing complex 7458
      nuclear protein-containing complex 1431
        small nuclear ribonucleoprotein complex 118
          7SK snRNP 4
          U7 snRNP 7
          spliceosomal snRNP complex + 108
Path 2
Term Annotations click to browse term
  cellular_component 20718
    cellular anatomical entity 20332
      intracellular anatomical structure 16223
        intracellular organelle 14562
          intracellular membrane-bounded organelle 13373
            nucleus 8620
              nuclear protein-containing complex 1431
                small nuclear ribonucleoprotein complex 118
                  7SK snRNP 4
                  U7 snRNP 7
                  spliceosomal snRNP complex + 108
paths to the root