DDX39B (DExD-box helicase 39B) - Rat Genome Database

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Gene: DDX39B (DExD-box helicase 39B) Homo sapiens
Analyze
Symbol: DDX39B
Name: DExD-box helicase 39B
RGD ID: 737407
HGNC Page HGNC
Description: Enables several functions, including ATP hydrolysis activity; ATP-dependent protein binding activity; and snRNA binding activity. Involved in several processes, including RNA metabolic process; negative regulation of DNA damage checkpoint; and viral mRNA export from host cell nucleus. Located in nuclear speck. Part of nucleus. Colocalizes with cytoplasm. Implicated in type 1 diabetes mellitus.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: 56 kDa U2AF65-associated protein; ATP-dependent RNA helicase p47; BAT1; D6S81E; DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B; DEAD box protein UAP56; DEAD-box helicase 39B; DEAD-box protein UAP56; HLA-B-associated transcript 1 protein; hla-b-associated transcript 1a; nuclear RNA helicase (DEAD family); spliceosome RNA helicase BAT1; spliceosome RNA helicase DDX39B; U2AF65-associated protein 56; UAP56
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: DDX39BP1   DDX39BP2   LOC390255  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl631,530,219 - 31,542,448 (-)EnsemblGRCh38hg38GRCh38
GRCh38631,530,226 - 31,542,003 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37631,498,003 - 31,509,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,605,975 - 31,618,204 (-)NCBINCBI36hg18NCBI36
Build 34631,605,974 - 31,617,904NCBI
Celera633,096,234 - 33,108,459 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,284,705 - 31,296,997 (-)NCBIHuRef
CHM1_1631,500,137 - 31,512,390 (-)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2-amino-14,16-dimethyloctadecan-3-ol  (EXP)
2-hydroxypropanoic acid  (EXP)
3-chloropropane-1,2-diol  (ISO)
4-amino-2,6-dinitrotoluene  (ISO)
5-fluorouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
aconitine  (ISO)
ammonium chloride  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
calcium dichloride  (EXP)
carbon nanotube  (ISO)
chlordecone  (ISO)
chlorpyrifos  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumestrol  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (EXP)
dibutyl phthalate  (ISO)
dorsomorphin  (EXP)
doxorubicin  (EXP)
elemental selenium  (EXP)
Enterolactone  (EXP)
enzyme inhibitor  (EXP)
ethanol  (ISO)
flutamide  (ISO)
folic acid  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
glyphosate  (ISO)
isoflavones  (ISO)
ivermectin  (EXP)
lead diacetate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
phenobarbital  (ISO)
rac-lactic acid  (EXP)
SB 431542  (EXP)
selenium atom  (EXP)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
temozolomide  (EXP)
tetrachloromethane  (ISO)
thimerosal  (EXP)
trichloroethene  (ISO)
trichostatin A  (EXP)
trimellitic anhydride  (ISO)
triptonide  (ISO)
urethane  (EXP)
valproic acid  (EXP)
vanadyl sulfate  (EXP)
vinclozolin  (ISO)
vitamin E  (EXP)
vorinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Additional References at PubMed
PMID:2813433   PMID:2911734   PMID:8012384   PMID:8125298   PMID:9242493   PMID:10343160   PMID:11170743   PMID:11380625   PMID:11675789   PMID:11790298   PMID:11979277   PMID:12477932  
PMID:12944400   PMID:14499622   PMID:14559993   PMID:14574404   PMID:14667819   PMID:15047853   PMID:15296731   PMID:15324660   PMID:15338056   PMID:15489334   PMID:15585580   PMID:15635413  
PMID:15833825   PMID:15843211   PMID:15870275   PMID:15969671   PMID:15998806   PMID:16101831   PMID:16169070   PMID:16344560   PMID:16478985   PMID:16949217   PMID:17190602   PMID:17517687  
PMID:17562711   PMID:17620012   PMID:18240960   PMID:18381799   PMID:18411249   PMID:18593880   PMID:18715507   PMID:18834321   PMID:18974867   PMID:18987644   PMID:19115949   PMID:19264631  
PMID:19322201   PMID:19403039   PMID:19505873   PMID:19733147   PMID:19738201   PMID:19836239   PMID:19851445   PMID:19913121   PMID:20116367   PMID:20360068   PMID:20379614   PMID:20453000  
PMID:20467437   PMID:20573985   PMID:20610707   PMID:20628086   PMID:20828777   PMID:20844015   PMID:20854863   PMID:20933106   PMID:20981025   PMID:21081666   PMID:21147923   PMID:21319273  
PMID:21507964   PMID:21680511   PMID:21799930   PMID:21814512   PMID:21859714   PMID:21873635   PMID:21912425   PMID:22071774   PMID:22144908   PMID:22197932   PMID:22304920   PMID:22446327  
PMID:22623428   PMID:22658674   PMID:22681889   PMID:22863883   PMID:22939629   PMID:22990118   PMID:23125841   PMID:23151878   PMID:23222130   PMID:23299939   PMID:23602568   PMID:24457600  
PMID:24550385   PMID:24711643   PMID:24753416   PMID:24811749   PMID:24981860   PMID:25038626   PMID:25468996   PMID:25662211   PMID:25921289   PMID:25940091   PMID:26167880   PMID:26265379  
PMID:26344197   PMID:26496610   PMID:26641092   PMID:26871637   PMID:26979993   PMID:27025967   PMID:27591049   PMID:27609421   PMID:27684187   PMID:28025139   PMID:28212935   PMID:28302793  
PMID:28340352   PMID:28380382   PMID:28515276   PMID:28581483   PMID:28712289   PMID:28977666   PMID:29117863   PMID:29128334   PMID:29229926   PMID:29467282   PMID:29507755   PMID:29509190  
PMID:29511261   PMID:29511337   PMID:29656893   PMID:29715546   PMID:29911972   PMID:29955894   PMID:30021884   PMID:30176153   PMID:30196744   PMID:30463901   PMID:30559450   PMID:30585729  
PMID:30745168   PMID:30804502   PMID:30890647   PMID:30948266   PMID:31160578   PMID:31180492   PMID:31239290   PMID:31300519   PMID:31365120   PMID:31470122   PMID:31586073   PMID:31980649  
PMID:32085897   PMID:32132739   PMID:32169426   PMID:32209106   PMID:32235678   PMID:32296183   PMID:32439635   PMID:32780723   PMID:32786267   PMID:32877691   PMID:32929329   PMID:32989256  
PMID:32994395   PMID:33022573   PMID:33024031   PMID:33194618   PMID:33301849   PMID:33306668   PMID:33436563   PMID:33536335   PMID:33845483   PMID:33961781   PMID:34079125   PMID:34709727  


Genomics

Comparative Map Data
DDX39B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl631,530,219 - 31,542,448 (-)EnsemblGRCh38hg38GRCh38
GRCh38631,530,226 - 31,542,003 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37631,498,003 - 31,509,780 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36631,605,975 - 31,618,204 (-)NCBINCBI36hg18NCBI36
Build 34631,605,974 - 31,617,904NCBI
Celera633,096,234 - 33,108,459 (-)NCBI
Cytogenetic Map6p21.33NCBI
HuRef631,284,705 - 31,296,997 (-)NCBIHuRef
CHM1_1631,500,137 - 31,512,390 (-)NCBICHM1_1
Ddx39b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391735,460,722 - 35,472,683 (+)NCBIGRCm39mm39
GRCm39 Ensembl1735,460,722 - 35,472,683 (+)Ensembl
GRCm381735,241,746 - 35,253,707 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1735,241,746 - 35,253,707 (+)EnsemblGRCm38mm10GRCm38
MGSCv371735,378,691 - 35,390,652 (+)NCBIGRCm37mm9NCBIm37
MGSCv361734,355,767 - 34,367,554 (+)NCBImm8
MGSCv361734,849,922 - 34,861,736 (+)NCBImm8
Celera1738,343,889 - 38,346,696 (+)NCBICelera
Cytogenetic Map17B1NCBI
cM Map1718.6NCBI
Ddx39b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2203,547,702 - 3,585,064 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl203,572,056 - 3,584,996 (-)Ensembl
Rnor_6.0204,806,103 - 4,818,600 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl204,806,108 - 4,818,568 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0206,886,503 - 6,898,979 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4203,611,128 - 3,623,578 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1203,611,355 - 3,623,754 (-)NCBI
Celera204,440,470 - 4,452,912 (+)NCBICelera
Cytogenetic Map20p12NCBI
Ddx39b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543772,835 - 84,384 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543772,835 - 84,045 (-)NCBIChiLan1.0ChiLan1.0
DDX39B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1632,081,210 - 32,093,135 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl632,081,210 - 32,092,569 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0631,191,333 - 31,203,246 (-)NCBIMhudiblu_PPA_v0panPan3
DDX39B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1121,032,377 - 1,044,465 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl121,032,368 - 1,044,492 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,169,048 - 1,179,440 (-)NCBI
ROS_Cfam_1.0121,177,608 - 1,189,705 (-)NCBI
ROS_Cfam_1.0 Ensembl121,176,147 - 1,190,041 (-)Ensembl
UMICH_Zoey_3.1121,036,642 - 1,047,031 (-)NCBI
UNSW_CanFamBas_1.0121,104,617 - 1,114,937 (-)NCBI
UU_Cfam_GSD_1.0121,171,204 - 1,181,685 (-)NCBI
Ddx39b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494635,580,562 - 35,597,123 (-)NCBI
SpeTri2.0NW_0049367271,968,032 - 1,980,789 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDX39B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl723,658,086 - 23,673,083 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1723,658,089 - 23,669,095 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2727,582,945 - 27,593,980 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDX39B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11740,445,258 - 40,457,379 (+)NCBIChlSab1.1chlSab2
ChlSab1.11740,445,258 - 40,457,379 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1740,447,061 - 40,456,826 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604431,430,956 - 31,442,672 (-)NCBIVero_WHO_p1.0
Ddx39b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475424,657,019 - 24,667,225 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH1521  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711119,691,988 - 119,692,092UniSTSGRCh37
GRCh37631,498,082 - 31,498,184UniSTSGRCh37
Build 36631,606,061 - 31,606,163RGDNCBI36
Celera633,096,320 - 33,096,422RGD
Celera11116,853,842 - 116,853,946UniSTS
Cytogenetic Map6pUniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map11q23.3UniSTS
HuRef631,284,791 - 31,284,893UniSTS
HuRef11115,634,434 - 115,634,538UniSTS
D17H6S81E-1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,508,099 - 31,508,309UniSTSGRCh37
Build 36631,616,078 - 31,616,288RGDNCBI36
Celera633,106,334 - 33,106,544RGD
HuRef631,294,859 - 31,295,069UniSTS
SHGC-172533  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37631,509,587 - 31,509,934UniSTSGRCh37
Build 36631,617,566 - 31,617,913RGDNCBI36
Celera633,107,821 - 33,108,168RGD
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map6p21.3UniSTS
HuRef631,296,332 - 31,296,679UniSTS
TNG Radiation Hybrid Map616893.0UniSTS
CH241-100F12_SP6  
Human AssemblyChrPosition (strand)SourceJBrowse
HuRef11115,634,743 - 115,634,930UniSTS

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5459
Count of miRNA genes:1134
Interacting mature miRNAs:1399
Transcripts:ENST00000376177, ENST00000396172, ENST00000415382, ENST00000417023, ENST00000417556, ENST00000418897, ENST00000419020, ENST00000419338, ENST00000427214, ENST00000428098, ENST00000428450, ENST00000431908, ENST00000449074, ENST00000449757, ENST00000453105, ENST00000456662, ENST00000456976, ENST00000458640, ENST00000462256, ENST00000462421, ENST00000474961, ENST00000478365, ENST00000481456, ENST00000482195, ENST00000484566
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 2
Medium 2430 2984 1685 591 1939 432 4355 2194 3732 347 1444 1596 174 1 1204 2788 5 2
Low 9 7 41 33 12 33 2 3 2 72 14 17 1 1
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_004640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_080598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_037852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB088115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB103621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB202112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB209217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF029061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF029062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK127767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK294939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK295854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK298194 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK316469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL662847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BA000025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC013006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM993499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BT009909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU628632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX001040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX248516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX927320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR753820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR753864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA048099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA272922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY500296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  MF477883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y14768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z37166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z60417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000376177   ⟹   ENSP00000365347
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,219 - 31,540,536 (-)Ensembl
RefSeq Acc Id: ENST00000396172   ⟹   ENSP00000379475
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,226 - 31,542,003 (-)Ensembl
RefSeq Acc Id: ENST00000417023   ⟹   ENSP00000406422
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,779 - 31,534,511 (-)Ensembl
RefSeq Acc Id: ENST00000418897   ⟹   ENSP00000399841
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,538,831 - 31,541,991 (-)Ensembl
RefSeq Acc Id: ENST00000419020   ⟹   ENSP00000405245
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,538,882 - 31,542,003 (-)Ensembl
RefSeq Acc Id: ENST00000419338   ⟹   ENSP00000410313
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,535,395 - 31,541,484 (-)Ensembl
RefSeq Acc Id: ENST00000427214   ⟹   ENSP00000399371
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,532,780 - 31,541,531 (-)Ensembl
RefSeq Acc Id: ENST00000428098   ⟹   ENSP00000392672
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,535,388 - 31,542,018 (-)Ensembl
RefSeq Acc Id: ENST00000428450   ⟹   ENSP00000405707
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,536,609 - 31,541,989 (-)Ensembl
RefSeq Acc Id: ENST00000431908   ⟹   ENSP00000408000
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,531,302 - 31,541,981 (-)Ensembl
RefSeq Acc Id: ENST00000449757   ⟹   ENSP00000409426
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,536,623 - 31,541,729 (-)Ensembl
RefSeq Acc Id: ENST00000456662   ⟹   ENSP00000416350
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,535,407 - 31,541,937 (-)Ensembl
RefSeq Acc Id: ENST00000456976   ⟹   ENSP00000393984
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,538,819 - 31,541,986 (-)Ensembl
RefSeq Acc Id: ENST00000458640   ⟹   ENSP00000416269
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,219 - 31,542,448 (-)Ensembl
RefSeq Acc Id: ENST00000462256
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,219 - 31,542,017 (-)Ensembl
RefSeq Acc Id: ENST00000462421
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,243 - 31,530,935 (-)Ensembl
RefSeq Acc Id: ENST00000474961
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,219 - 31,531,744 (-)Ensembl
RefSeq Acc Id: ENST00000478365
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,531,116 - 31,531,671 (-)Ensembl
RefSeq Acc Id: ENST00000481456
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,532,413 - 31,542,001 (-)Ensembl
RefSeq Acc Id: ENST00000482195
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,531,274 - 31,542,401 (-)Ensembl
RefSeq Acc Id: ENST00000484566   ⟹   ENSP00000436220
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl631,530,219 - 31,535,475 (-)Ensembl
RefSeq Acc Id: NM_004640   ⟹   NP_004631
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,530,226 - 31,542,003 (-)NCBI
GRCh37631,497,996 - 31,510,252 (-)ENTREZGENE
Build 36631,605,975 - 31,618,204 (-)NCBI Archive
HuRef631,284,705 - 31,296,997 (-)ENTREZGENE
CHM1_1631,500,137 - 31,512,390 (-)NCBI
Sequence:
RefSeq Acc Id: NM_080598   ⟹   NP_542165
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,530,226 - 31,542,003 (-)NCBI
GRCh37631,497,996 - 31,510,252 (-)ENTREZGENE
Build 36631,605,975 - 31,618,204 (-)NCBI Archive
HuRef631,284,705 - 31,296,997 (-)ENTREZGENE
CHM1_1631,500,137 - 31,512,390 (-)NCBI
Sequence:
RefSeq Acc Id: NR_037852
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,530,226 - 31,542,003 (-)NCBI
GRCh37631,497,996 - 31,510,252 (-)ENTREZGENE
HuRef631,284,705 - 31,296,997 (-)ENTREZGENE
CHM1_1631,500,137 - 31,512,390 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_004631 (Get FASTA)   NCBI Sequence Viewer  
  NP_542165 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAB94615 (Get FASTA)   NCBI Sequence Viewer  
  AAC63046 (Get FASTA)   NCBI Sequence Viewer  
  AAH00361 (Get FASTA)   NCBI Sequence Viewer  
  AAH13006 (Get FASTA)   NCBI Sequence Viewer  
  AAP88911 (Get FASTA)   NCBI Sequence Viewer  
  AQY76782 (Get FASTA)   NCBI Sequence Viewer  
  AQY76783 (Get FASTA)   NCBI Sequence Viewer  
  AQY76784 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70064 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70065 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70066 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70067 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70068 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70069 (Get FASTA)   NCBI Sequence Viewer  
  ASZ70070 (Get FASTA)   NCBI Sequence Viewer  
  BAB63306 (Get FASTA)   NCBI Sequence Viewer  
  BAC54953 (Get FASTA)   NCBI Sequence Viewer  
  BAD92454 (Get FASTA)   NCBI Sequence Viewer  
  BAD96632 (Get FASTA)   NCBI Sequence Viewer  
  BAE78637 (Get FASTA)   NCBI Sequence Viewer  
  BAF31287 (Get FASTA)   NCBI Sequence Viewer  
  BAG58016 (Get FASTA)   NCBI Sequence Viewer  
  BAG58508 (Get FASTA)   NCBI Sequence Viewer  
  BAG58660 (Get FASTA)   NCBI Sequence Viewer  
  BAG60464 (Get FASTA)   NCBI Sequence Viewer  
  BAH14840 (Get FASTA)   NCBI Sequence Viewer  
  CAA75074 (Get FASTA)   NCBI Sequence Viewer  
  CAA85523 (Get FASTA)   NCBI Sequence Viewer  
  EAX03404 (Get FASTA)   NCBI Sequence Viewer  
  EAX03406 (Get FASTA)   NCBI Sequence Viewer  
  EAX03407 (Get FASTA)   NCBI Sequence Viewer  
  EAX03408 (Get FASTA)   NCBI Sequence Viewer  
  EAX03409 (Get FASTA)   NCBI Sequence Viewer  
  EAX03410 (Get FASTA)   NCBI Sequence Viewer  
  EAX03411 (Get FASTA)   NCBI Sequence Viewer  
  EAX03413 (Get FASTA)   NCBI Sequence Viewer  
  Q13838 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_542165   ⟸   NM_080598
- UniProtKB: Q13838 (UniProtKB/Swiss-Prot),   A0A024RCM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_004631   ⟸   NM_004640
- UniProtKB: Q13838 (UniProtKB/Swiss-Prot),   A0A024RCM3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000399371   ⟸   ENST00000427214
RefSeq Acc Id: ENSP00000392672   ⟸   ENST00000428098
RefSeq Acc Id: ENSP00000405707   ⟸   ENST00000428450
RefSeq Acc Id: ENSP00000365347   ⟸   ENST00000376177
RefSeq Acc Id: ENSP00000406422   ⟸   ENST00000417023
RefSeq Acc Id: ENSP00000416350   ⟸   ENST00000456662
RefSeq Acc Id: ENSP00000393984   ⟸   ENST00000456976
RefSeq Acc Id: ENSP00000399841   ⟸   ENST00000418897
RefSeq Acc Id: ENSP00000416269   ⟸   ENST00000458640
RefSeq Acc Id: ENSP00000405245   ⟸   ENST00000419020
RefSeq Acc Id: ENSP00000410313   ⟸   ENST00000419338
RefSeq Acc Id: ENSP00000436220   ⟸   ENST00000484566
RefSeq Acc Id: ENSP00000408000   ⟸   ENST00000431908
RefSeq Acc Id: ENSP00000379475   ⟸   ENST00000396172
RefSeq Acc Id: ENSP00000409426   ⟸   ENST00000449757
Promoters
RGD ID:6872492
Promoter ID:EPDNEW_H9411
Type:initiation region
Name:DDX39B_4
Description:DExD-box helicase 39B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9412  EPDNEW_H9413  EPDNEW_H9414  EPDNEW_H9415  EPDNEW_H9417  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,530,363 - 31,530,423EPDNEW
RGD ID:6872494
Promoter ID:EPDNEW_H9412
Type:initiation region
Name:DDX39B_2
Description:DExD-box helicase 39B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9411  EPDNEW_H9413  EPDNEW_H9414  EPDNEW_H9415  EPDNEW_H9417  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,534,554 - 31,534,614EPDNEW
RGD ID:6872496
Promoter ID:EPDNEW_H9413
Type:initiation region
Name:DDX39B_5
Description:DExD-box helicase 39B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9411  EPDNEW_H9412  EPDNEW_H9414  EPDNEW_H9415  EPDNEW_H9417  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,538,824 - 31,538,884EPDNEW
RGD ID:6872498
Promoter ID:EPDNEW_H9414
Type:initiation region
Name:DDX39B_6
Description:DExD-box helicase 39B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9411  EPDNEW_H9412  EPDNEW_H9413  EPDNEW_H9415  EPDNEW_H9417  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,540,397 - 31,540,457EPDNEW
RGD ID:6872500
Promoter ID:EPDNEW_H9415
Type:initiation region
Name:DDX39B_3
Description:DExD-box helicase 39B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9411  EPDNEW_H9412  EPDNEW_H9413  EPDNEW_H9414  EPDNEW_H9417  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,541,177 - 31,541,237EPDNEW
RGD ID:6872502
Promoter ID:EPDNEW_H9416
Type:initiation region
Name:BAT1_1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,541,486 - 31,541,546EPDNEW
RGD ID:6872504
Promoter ID:EPDNEW_H9417
Type:initiation region
Name:DDX39B_1
Description:DExD-box helicase 39B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H9411  EPDNEW_H9412  EPDNEW_H9413  EPDNEW_H9414  EPDNEW_H9415  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38631,542,003 - 31,542,063EPDNEW
RGD ID:6803789
Promoter ID:HG_KWN:52928
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000076305,   OTTHUMT00000259092,   OTTHUMT00000259094
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,606,586 - 31,608,492 (-)MPROMDB
RGD ID:6803787
Promoter ID:HG_KWN:52929
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000259091,   UC003NTR.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,608,536 - 31,611,092 (-)MPROMDB
RGD ID:6803788
Promoter ID:HG_KWN:52930
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:OTTHUMT00000259093
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,611,414 - 31,611,914 (-)MPROMDB
RGD ID:6803791
Promoter ID:HG_KWN:52931
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000376163,   ENST00000376177,   NM_004640,   NM_080598,   OTTHUMT00000076297,   OTTHUMT00000076298,   OTTHUMT00000076299,   OTTHUMT00000076300,   OTTHUMT00000076301,   OTTHUMT00000076302,   OTTHUMT00000076306,   OTTHUMT00000076307,   OTTHUMT00000259084,   OTTHUMT00000259085,   OTTHUMT00000259087,   OTTHUMT00000259088,   OTTHUMT00000259089,   OTTHUMT00000259090,   UC003NTX.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,616,106 - 31,618,257 (-)MPROMDB
RGD ID:6853136
Promoter ID:EP74389
Type:initiation region
Name:HS_BAT1
Description:HLA-B associated transcript 1.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,617,242 - 31,617,302EPD
RGD ID:6804190
Promoter ID:HG_KWN:52933
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000303892,   ENST00000376146,   ENST00000376151,   NM_001144963,   NM_138282,   OTTHUMT00000259096,   UC003NTV.1
Position:
Human AssemblyChrPosition (strand)Source
Build 36631,622,211 - 31,622,711 (-)MPROMDB

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_004640.6(DDX39B):c.646C>T (p.Arg216Cys) single nucleotide variant Malignant melanoma [RCV000067283] Chr6:31535456 [GRCh38]
Chr6:31503233 [GRCh37]
Chr6:31611212 [NCBI36]
Chr6:6p21.33
not provided
NM_004640.6(DDX39B):c.736-1024G>A single nucleotide variant Lung cancer [RCV000096823] Chr6:31533935 [GRCh38]
Chr6:31501712 [GRCh37]
Chr6:6p21.33
uncertain significance
GRCh38/hg38 6p25.3-12.3(chr6:156974-46789291)x3 copy number gain See cases [RCV000143497] Chr6:156974..46789291 [GRCh38]
Chr6:156974..46757028 [GRCh37]
Chr6:101974..46864987 [NCBI36]
Chr6:6p25.3-12.3
pathogenic
GRCh37/hg19 6p21.33(chr6:31384577-31902308)x3 copy number gain See cases [RCV000448679] Chr6:31384577..31902308 [GRCh37]
Chr6:6p21.33
uncertain significance
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p22.1-21.32(chr6:28130359-32108367)x3 copy number gain not provided [RCV000745592] Chr6:28130359..32108367 [GRCh37]
Chr6:6p22.1-21.32
uncertain significance
NM_004640.7(DDX39B):c.212-4T>C single nucleotide variant not provided [RCV000879086] Chr6:31539278 [GRCh38]
Chr6:31507055 [GRCh37]
Chr6:6p21.33
benign
NM_004640.7(DDX39B):c.433-6C>T single nucleotide variant not provided [RCV000880089] Chr6:31536689 [GRCh38]
Chr6:31504466 [GRCh37]
Chr6:6p21.33
benign
GRCh37/hg19 6p22.1-q14.1(chr6:29455465-81447367) copy number gain not provided [RCV000767714] Chr6:29455465..81447367 [GRCh37]
Chr6:6p22.1-q14.1
pathogenic
NM_004640.7(DDX39B):c.1038A>G (p.Leu346=) single nucleotide variant not provided [RCV000896638] Chr6:31531137 [GRCh38]
Chr6:31498914 [GRCh37]
Chr6:6p21.33
benign
GRCh37/hg19 6p21.33-21.31(chr6:31036397-34088832)x3 copy number gain not provided [RCV001005791] Chr6:31036397..34088832 [GRCh37]
Chr6:6p21.33-21.31
likely pathogenic
NC_000006.11:g.28005012_31683185del deletion Megacolon [RCV001290055] Chr6:28005012..31683185 [GRCh37]
Chr6:6p22.1-21.33
likely pathogenic

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13917 AgrOrtholog
COSMIC DDX39B COSMIC
Ensembl Genes ENSG00000198563 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000215425 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000225073 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000225859 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000229496 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000230624 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000235439 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSG00000237889 UniProtKB/TrEMBL
Ensembl Protein ENSP00000365347 UniProtKB/TrEMBL
  ENSP00000373000 UniProtKB/Swiss-Prot
  ENSP00000379475 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000383149 UniProtKB/TrEMBL
  ENSP00000383151 UniProtKB/Swiss-Prot
  ENSP00000383152 UniProtKB/Swiss-Prot
  ENSP00000387452 UniProtKB/TrEMBL
  ENSP00000387994 UniProtKB/Swiss-Prot
  ENSP00000388243 UniProtKB/TrEMBL
  ENSP00000388382 UniProtKB/TrEMBL
  ENSP00000388776 UniProtKB/TrEMBL
  ENSP00000388880 UniProtKB/Swiss-Prot
  ENSP00000389350 UniProtKB/TrEMBL
  ENSP00000390562 UniProtKB/TrEMBL
  ENSP00000390999 UniProtKB/Swiss-Prot
  ENSP00000391070 UniProtKB/TrEMBL
  ENSP00000391335 UniProtKB/TrEMBL
  ENSP00000391441 UniProtKB/TrEMBL
  ENSP00000391463 UniProtKB/Swiss-Prot
  ENSP00000391480 UniProtKB/TrEMBL
  ENSP00000391580 UniProtKB/TrEMBL
  ENSP00000392644 UniProtKB/TrEMBL
  ENSP00000392672 UniProtKB/TrEMBL
  ENSP00000392819 UniProtKB/TrEMBL
  ENSP00000392922 UniProtKB/TrEMBL
  ENSP00000393172 UniProtKB/TrEMBL
  ENSP00000393650 UniProtKB/TrEMBL
  ENSP00000393712 UniProtKB/Swiss-Prot
  ENSP00000393984 UniProtKB/TrEMBL
  ENSP00000394160 UniProtKB/Swiss-Prot
  ENSP00000394329 UniProtKB/TrEMBL
  ENSP00000394491 UniProtKB/TrEMBL
  ENSP00000394963 UniProtKB/TrEMBL
  ENSP00000395058 UniProtKB/TrEMBL
  ENSP00000395105 UniProtKB/TrEMBL
  ENSP00000395618 UniProtKB/TrEMBL
  ENSP00000395671 UniProtKB/TrEMBL
  ENSP00000396021 UniProtKB/TrEMBL
  ENSP00000396559 UniProtKB/TrEMBL
  ENSP00000396623 UniProtKB/TrEMBL
  ENSP00000396811 UniProtKB/TrEMBL
  ENSP00000396885 UniProtKB/TrEMBL
  ENSP00000396930 UniProtKB/TrEMBL
  ENSP00000397591 UniProtKB/TrEMBL
  ENSP00000398190 UniProtKB/TrEMBL
  ENSP00000398274 UniProtKB/TrEMBL
  ENSP00000398492 UniProtKB/TrEMBL
  ENSP00000398775 UniProtKB/Swiss-Prot
  ENSP00000398978 UniProtKB/TrEMBL
  ENSP00000399030 UniProtKB/Swiss-Prot
  ENSP00000399371 UniProtKB/TrEMBL
  ENSP00000399542 UniProtKB/TrEMBL
  ENSP00000399659 UniProtKB/TrEMBL
  ENSP00000399841 UniProtKB/TrEMBL
  ENSP00000400326 UniProtKB/Swiss-Prot
  ENSP00000400556 UniProtKB/TrEMBL
  ENSP00000402876 UniProtKB/TrEMBL
  ENSP00000402942 UniProtKB/TrEMBL
  ENSP00000403358 UniProtKB/TrEMBL
  ENSP00000403593 UniProtKB/TrEMBL
  ENSP00000404228 UniProtKB/TrEMBL
  ENSP00000404695 UniProtKB/Swiss-Prot
  ENSP00000404735 UniProtKB/TrEMBL
  ENSP00000405245 UniProtKB/TrEMBL
  ENSP00000405374 UniProtKB/TrEMBL
  ENSP00000405386 UniProtKB/TrEMBL
  ENSP00000405489 UniProtKB/TrEMBL
  ENSP00000405560 UniProtKB/Swiss-Prot
  ENSP00000405665 UniProtKB/TrEMBL
  ENSP00000405707 UniProtKB/TrEMBL
  ENSP00000405964 UniProtKB/TrEMBL
  ENSP00000406006 UniProtKB/TrEMBL
  ENSP00000406060 UniProtKB/TrEMBL
  ENSP00000406085 UniProtKB/TrEMBL
  ENSP00000406096 UniProtKB/TrEMBL
  ENSP00000406348 UniProtKB/TrEMBL
  ENSP00000406422 UniProtKB/TrEMBL
  ENSP00000406504 UniProtKB/TrEMBL
  ENSP00000406739 UniProtKB/TrEMBL
  ENSP00000407054 UniProtKB/TrEMBL
  ENSP00000407419 UniProtKB/Swiss-Prot
  ENSP00000407427 UniProtKB/TrEMBL
  ENSP00000407519 UniProtKB/TrEMBL
  ENSP00000407647 UniProtKB/TrEMBL
  ENSP00000408000 UniProtKB/TrEMBL
  ENSP00000408067 UniProtKB/TrEMBL
  ENSP00000408191 UniProtKB/TrEMBL
  ENSP00000408609 UniProtKB/TrEMBL
  ENSP00000408832 UniProtKB/TrEMBL
  ENSP00000408908 UniProtKB/TrEMBL
  ENSP00000409162 UniProtKB/TrEMBL
  ENSP00000409290 UniProtKB/TrEMBL
  ENSP00000409426 UniProtKB/TrEMBL
  ENSP00000409451 UniProtKB/TrEMBL
  ENSP00000409602 UniProtKB/TrEMBL
  ENSP00000409810 UniProtKB/TrEMBL
  ENSP00000409929 UniProtKB/TrEMBL
  ENSP00000410112 UniProtKB/TrEMBL
  ENSP00000410277 UniProtKB/TrEMBL
  ENSP00000410313 UniProtKB/TrEMBL
  ENSP00000410915 UniProtKB/TrEMBL
  ENSP00000411136 UniProtKB/Swiss-Prot
  ENSP00000411371 UniProtKB/TrEMBL
  ENSP00000411458 UniProtKB/TrEMBL
  ENSP00000411538 UniProtKB/TrEMBL
  ENSP00000411853 UniProtKB/Swiss-Prot
  ENSP00000411865 UniProtKB/TrEMBL
  ENSP00000411967 UniProtKB/TrEMBL
  ENSP00000412286 UniProtKB/TrEMBL
  ENSP00000412609 UniProtKB/TrEMBL
  ENSP00000413149 UniProtKB/TrEMBL
  ENSP00000413576 UniProtKB/TrEMBL
  ENSP00000413790 UniProtKB/TrEMBL
  ENSP00000413793 UniProtKB/TrEMBL
  ENSP00000413832 UniProtKB/TrEMBL
  ENSP00000414082 UniProtKB/TrEMBL
  ENSP00000414096 UniProtKB/TrEMBL
  ENSP00000414984 UniProtKB/TrEMBL
  ENSP00000415802 UniProtKB/TrEMBL
  ENSP00000416269 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000416350 UniProtKB/TrEMBL
  ENSP00000416358 UniProtKB/TrEMBL
  ENSP00000416407 UniProtKB/TrEMBL
  ENSP00000416843 UniProtKB/TrEMBL
  ENSP00000431377 UniProtKB/TrEMBL
  ENSP00000431969 UniProtKB/TrEMBL
  ENSP00000432296 UniProtKB/TrEMBL
  ENSP00000433192 UniProtKB/TrEMBL
  ENSP00000433234 UniProtKB/TrEMBL
  ENSP00000434615 UniProtKB/TrEMBL
  ENSP00000434736 UniProtKB/TrEMBL
  ENSP00000436220 UniProtKB/TrEMBL
  ENSP00000437017 UniProtKB/TrEMBL
Ensembl Transcript ENST00000376177 UniProtKB/TrEMBL
  ENST00000383508 UniProtKB/Swiss-Prot
  ENST00000396172 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000400293 UniProtKB/TrEMBL
  ENST00000400295 UniProtKB/Swiss-Prot
  ENST00000400296 UniProtKB/Swiss-Prot
  ENST00000411415 UniProtKB/TrEMBL
  ENST00000412106 UniProtKB/Swiss-Prot
  ENST00000412246 UniProtKB/TrEMBL
  ENST00000412330 UniProtKB/Swiss-Prot
  ENST00000412386 UniProtKB/TrEMBL
  ENST00000413544 UniProtKB/TrEMBL
  ENST00000413678 UniProtKB/Swiss-Prot
  ENST00000414088 UniProtKB/TrEMBL
  ENST00000414440 UniProtKB/Swiss-Prot
  ENST00000414451 UniProtKB/TrEMBL
  ENST00000414881 UniProtKB/TrEMBL
  ENST00000415027 UniProtKB/TrEMBL
  ENST00000415036 UniProtKB/TrEMBL
  ENST00000415390 UniProtKB/TrEMBL
  ENST00000415515 UniProtKB/TrEMBL
  ENST00000415689 UniProtKB/Swiss-Prot
  ENST00000416183 UniProtKB/TrEMBL
  ENST00000416325 UniProtKB/TrEMBL
  ENST00000416863 UniProtKB/Swiss-Prot
  ENST00000416969 UniProtKB/TrEMBL
  ENST00000417023 UniProtKB/TrEMBL
  ENST00000417136 UniProtKB/TrEMBL
  ENST00000417491 UniProtKB/TrEMBL
  ENST00000417558 UniProtKB/TrEMBL
  ENST00000417995 UniProtKB/TrEMBL
  ENST00000418760 UniProtKB/TrEMBL
  ENST00000418897 UniProtKB/TrEMBL
  ENST00000419020 UniProtKB/TrEMBL
  ENST00000419338 UniProtKB/TrEMBL
  ENST00000419913 UniProtKB/TrEMBL
  ENST00000420337 UniProtKB/TrEMBL
  ENST00000420958 UniProtKB/TrEMBL
  ENST00000422243 UniProtKB/TrEMBL
  ENST00000423951 UniProtKB/TrEMBL
  ENST00000425047 UniProtKB/TrEMBL
  ENST00000426189 UniProtKB/TrEMBL
  ENST00000426766 UniProtKB/TrEMBL
  ENST00000427214 UniProtKB/TrEMBL
  ENST00000427425 UniProtKB/TrEMBL
  ENST00000427489 UniProtKB/TrEMBL
  ENST00000427652 UniProtKB/TrEMBL
  ENST00000427927 UniProtKB/TrEMBL
  ENST00000428098 UniProtKB/TrEMBL
  ENST00000428107 UniProtKB/TrEMBL
  ENST00000428291 UniProtKB/TrEMBL
  ENST00000428450 UniProtKB/TrEMBL
  ENST00000429022 UniProtKB/TrEMBL
  ENST00000430703 UniProtKB/TrEMBL
  ENST00000430784 UniProtKB/Swiss-Prot
  ENST00000431360 UniProtKB/Swiss-Prot
  ENST00000431908 UniProtKB/TrEMBL
  ENST00000432189 UniProtKB/TrEMBL
  ENST00000432433 UniProtKB/TrEMBL
  ENST00000432466 UniProtKB/TrEMBL
  ENST00000432549 UniProtKB/TrEMBL
  ENST00000433291 UniProtKB/TrEMBL
  ENST00000433293 UniProtKB/TrEMBL
  ENST00000433789 UniProtKB/TrEMBL
  ENST00000433987 UniProtKB/TrEMBL
  ENST00000434740 UniProtKB/TrEMBL
  ENST00000435182 UniProtKB/TrEMBL
  ENST00000436919 UniProtKB/TrEMBL
  ENST00000436995 UniProtKB/TrEMBL
  ENST00000437943 UniProtKB/TrEMBL
  ENST00000438301 UniProtKB/TrEMBL
  ENST00000438433 UniProtKB/TrEMBL
  ENST00000438449 UniProtKB/TrEMBL
  ENST00000438578 UniProtKB/TrEMBL
  ENST00000438883 UniProtKB/TrEMBL
  ENST00000439691 UniProtKB/TrEMBL
  ENST00000439857 UniProtKB/TrEMBL
  ENST00000439927 UniProtKB/TrEMBL
  ENST00000441425 UniProtKB/Swiss-Prot
  ENST00000441479 UniProtKB/TrEMBL
  ENST00000441901 UniProtKB/TrEMBL
  ENST00000442537 UniProtKB/TrEMBL
  ENST00000442717 UniProtKB/TrEMBL
  ENST00000443933 UniProtKB/TrEMBL
  ENST00000444267 UniProtKB/TrEMBL
  ENST00000444480 UniProtKB/TrEMBL
  ENST00000444726 UniProtKB/TrEMBL
  ENST00000445218 UniProtKB/Swiss-Prot
  ENST00000445602 UniProtKB/TrEMBL
  ENST00000445783 UniProtKB/TrEMBL
  ENST00000446272 UniProtKB/TrEMBL
  ENST00000446328 UniProtKB/TrEMBL
  ENST00000446341 UniProtKB/TrEMBL
  ENST00000446909 UniProtKB/TrEMBL
  ENST00000448000 UniProtKB/TrEMBL
  ENST00000448296 UniProtKB/Swiss-Prot
  ENST00000448658 UniProtKB/TrEMBL
  ENST00000448800 UniProtKB/TrEMBL
  ENST00000449010 UniProtKB/TrEMBL
  ENST00000449100 UniProtKB/TrEMBL
  ENST00000449757 UniProtKB/TrEMBL
  ENST00000449863 UniProtKB/TrEMBL
  ENST00000450987 UniProtKB/TrEMBL
  ENST00000451051 UniProtKB/TrEMBL
  ENST00000451465 UniProtKB/TrEMBL
  ENST00000452163 UniProtKB/TrEMBL
  ENST00000452414 UniProtKB/TrEMBL
  ENST00000452792 UniProtKB/TrEMBL
  ENST00000452908 UniProtKB/TrEMBL
  ENST00000453138 UniProtKB/Swiss-Prot
  ENST00000453488 UniProtKB/TrEMBL
  ENST00000453799 UniProtKB/TrEMBL
  ENST00000455324 UniProtKB/TrEMBL
  ENST00000455400 UniProtKB/TrEMBL
  ENST00000455645 UniProtKB/TrEMBL
  ENST00000455806 UniProtKB/TrEMBL
  ENST00000455916 UniProtKB/TrEMBL
  ENST00000456476 UniProtKB/Swiss-Prot
  ENST00000456662 UniProtKB/TrEMBL
  ENST00000456666 UniProtKB/Swiss-Prot
  ENST00000456976 UniProtKB/TrEMBL
  ENST00000457121 UniProtKB/TrEMBL
  ENST00000457900 UniProtKB/TrEMBL
  ENST00000458640 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000464411 UniProtKB/TrEMBL
  ENST00000467694 UniProtKB/TrEMBL
  ENST00000482080 UniProtKB/TrEMBL
  ENST00000484344 UniProtKB/TrEMBL
  ENST00000484566 UniProtKB/TrEMBL
  ENST00000493350 UniProtKB/TrEMBL
  ENST00000493860 UniProtKB/TrEMBL
  ENST00000495997 UniProtKB/TrEMBL
  ENST00000497007 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000198563 GTEx
  ENSG00000215425 GTEx
  ENSG00000225073 GTEx
  ENSG00000225859 GTEx
  ENSG00000229496 GTEx
  ENSG00000230624 GTEx
  ENSG00000235439 GTEx
  ENSG00000237889 GTEx
HGNC ID HGNC:13917 ENTREZGENE
Human Proteome Map DDX39B Human Proteome Map
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:7919 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 7919 ENTREZGENE
OMIM 142560 OMIM
Pfam DEAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Helicase_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA25262 PharmGKB
PROSITE HELICASE_ATP_BIND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART DEXDc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HELICc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A024RCM3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0A0MT12_HUMAN UniProtKB/TrEMBL
  A0A0G2JHN7_HUMAN UniProtKB/TrEMBL
  A0A0G2JJL7_HUMAN UniProtKB/TrEMBL
  A0A0G2JJZ9_HUMAN UniProtKB/TrEMBL
  A0A140T973_HUMAN UniProtKB/TrEMBL
  A0A140T996_HUMAN UniProtKB/TrEMBL
  A0A140T9A8_HUMAN UniProtKB/TrEMBL
  A0A140T9B4_HUMAN UniProtKB/TrEMBL
  A0A140T9K1_HUMAN UniProtKB/TrEMBL
  A0A140T9K2_HUMAN UniProtKB/TrEMBL
  A0A140T9L4_HUMAN UniProtKB/TrEMBL
  A0A140T9N3_HUMAN UniProtKB/TrEMBL
  A0A140T9Q9_HUMAN UniProtKB/TrEMBL
  A0A140T9X3_HUMAN UniProtKB/TrEMBL
  A0A140T9X9_HUMAN UniProtKB/TrEMBL
  A0A140TA18_HUMAN UniProtKB/TrEMBL
  A0A286SD52_HUMAN UniProtKB/TrEMBL
  A0A286SD59_HUMAN UniProtKB/TrEMBL
  A0A286SD63_HUMAN UniProtKB/TrEMBL
  A0A286SD64_HUMAN UniProtKB/TrEMBL
  A0A286SD65_HUMAN UniProtKB/TrEMBL
  A0A286SD67_HUMAN UniProtKB/TrEMBL
  A0A286SD68_HUMAN UniProtKB/TrEMBL
  DX39B_HUMAN UniProtKB/Swiss-Prot
  F6QYI9_HUMAN UniProtKB/TrEMBL
  F6R6M7_HUMAN UniProtKB/TrEMBL
  F6S2B7_HUMAN UniProtKB/TrEMBL
  F6S4E6_HUMAN UniProtKB/TrEMBL
  F6SXL5_HUMAN UniProtKB/TrEMBL
  F6TRA5_HUMAN UniProtKB/TrEMBL
  F6U6E2_HUMAN UniProtKB/TrEMBL
  F6UJC5_HUMAN UniProtKB/TrEMBL
  F6WLT2_HUMAN UniProtKB/TrEMBL
  H0Y400_HUMAN UniProtKB/TrEMBL
  H0YCC6_HUMAN UniProtKB/TrEMBL
  Q13838 ENTREZGENE
  Q5STU3_HUMAN UniProtKB/TrEMBL
UniProt Secondary B0S8C0 UniProtKB/Swiss-Prot
  O43496 UniProtKB/Swiss-Prot
  Q0EFA1 UniProtKB/Swiss-Prot
  Q2L6F9 UniProtKB/Swiss-Prot
  Q53GL9 UniProtKB/Swiss-Prot
  Q5HYT9 UniProtKB/TrEMBL
  Q5RJ64 UniProtKB/Swiss-Prot
  Q5RJ66 UniProtKB/Swiss-Prot
  Q5RJ68 UniProtKB/TrEMBL
  Q5ST94 UniProtKB/Swiss-Prot
  Q5STB4 UniProtKB/Swiss-Prot
  Q5STB5 UniProtKB/Swiss-Prot
  Q5STB7 UniProtKB/Swiss-Prot
  Q5STB8 UniProtKB/Swiss-Prot
  Q5STU4 UniProtKB/Swiss-Prot
  Q5STU5 UniProtKB/Swiss-Prot
  Q5STU6 UniProtKB/Swiss-Prot
  Q5STU8 UniProtKB/Swiss-Prot
  Q71V76 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-10-04 DDX39B  DExD-box helicase 39B    DEAD-box helicase 39B  Symbol and/or name change 5135510 APPROVED
2016-01-12 DDX39B  DEAD-box helicase 39B    DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B  Symbol and/or name change 5135510 APPROVED
2011-08-16 DDX39B  DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B  DDX39B  DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B  Symbol and/or name change 5135510 APPROVED
2011-07-27 DDX39B  DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B  BAT1  HLA-B associated transcript 1  Symbol and/or name change 5135510 APPROVED