PRPF40B (pre-mRNA processing factor 40 homolog B) - Rat Genome Database

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Gene: PRPF40B (pre-mRNA processing factor 40 homolog B) Homo sapiens
Analyze
Symbol: PRPF40B
Name: pre-mRNA processing factor 40 homolog B
RGD ID: 1604375
HGNC Page HGNC:25031
Description: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nuclear speck. Predicted to be part of U1 snRNP and U2-type prespliceosome.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Huntingtin interacting protein C; huntingtin yeast partner C; huntingtin-interacting protein C; HYPC; pre-mRNA-processing factor 40 homolog B; PRP40 homolog, pre-mRNA processing factor B; PRP40 pre-mRNA processing factor 40 homolog B
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,622,646 - 49,644,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,568,218 - 49,644,666 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,017,344 - 50,038,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,303,670 - 48,324,716 (+)NCBINCBI36Build 36hg18NCBI36
Celera1248,813,077 - 48,834,123 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,049,273 - 47,070,021 (+)NCBIHuRef
CHM1_11249,983,486 - 50,004,741 (+)NCBICHM1_1
T2T-CHM13v2.01249,585,655 - 49,607,675 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nuclear speck  (IEA)
nucleus  (IEA)
U1 snRNP  (IBA,IEA)
U2-type prespliceosome  (IBA,IEA)

Molecular Function
protein binding  (IPI)
RNA binding  (IBA,IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9700202   PMID:10958656   PMID:12477932   PMID:14618241   PMID:15146197   PMID:21873635   PMID:22939629   PMID:25605964   PMID:26344197   PMID:26496610   PMID:28514442  
PMID:30021884   PMID:31088860   PMID:31753913   PMID:32296183   PMID:32344865   PMID:32393512   PMID:32513696   PMID:33845483   PMID:33961781   PMID:37689310  


Genomics

Comparative Map Data
PRPF40B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381249,622,646 - 49,644,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1249,568,218 - 49,644,666 (+)EnsemblGRCh38hg38GRCh38
GRCh371250,017,344 - 50,038,448 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361248,303,670 - 48,324,716 (+)NCBINCBI36Build 36hg18NCBI36
Celera1248,813,077 - 48,834,123 (+)NCBICelera
Cytogenetic Map12q13.12NCBI
HuRef1247,049,273 - 47,070,021 (+)NCBIHuRef
CHM1_11249,983,486 - 50,004,741 (+)NCBICHM1_1
T2T-CHM13v2.01249,585,655 - 49,607,675 (+)NCBIT2T-CHM13v2.0
Prpf40b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391599,192,957 - 99,214,899 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1599,192,968 - 99,214,899 (+)EnsemblGRCm39 Ensembl
GRCm381599,295,076 - 99,317,018 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1599,295,087 - 99,317,018 (+)EnsemblGRCm38mm10GRCm38
MGSCv371599,125,840 - 99,147,438 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361599,123,443 - 99,145,041 (+)NCBIMGSCv36mm8
Celera15101,451,974 - 101,473,568 (+)NCBICelera
Cytogenetic Map15F1NCBI
cM Map1556.13NCBI
Prpf40b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87132,271,469 - 132,332,913 (+)NCBIGRCr8
mRatBN7.27130,392,611 - 130,454,053 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7130,432,112 - 130,454,052 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7132,244,910 - 132,259,145 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07134,470,488 - 134,484,723 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07134,383,004 - 134,397,239 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07140,958,952 - 140,981,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7140,967,282 - 140,981,583 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X115,463,331 - 115,485,029 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47138,031,952 - 138,064,371 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera7126,922,583 - 126,936,827 (+)NCBICelera
Cytogenetic Map7q36NCBI
Prpf40b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955547231,875 - 252,922 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955547232,286 - 252,922 (+)NCBIChiLan1.0ChiLan1.0
PRPF40B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21044,540,346 - 44,562,767 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11244,537,107 - 44,558,346 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01239,106,862 - 39,128,125 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11239,998,264 - 40,020,381 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1239,998,264 - 40,019,481 (-)Ensemblpanpan1.1panPan2
PRPF40B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1275,017,861 - 5,038,033 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl275,018,060 - 5,038,119 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2741,219,770 - 41,240,081 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0275,067,497 - 5,088,016 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl275,067,502 - 5,087,997 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1275,033,023 - 5,053,533 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0275,022,852 - 5,043,502 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02741,613,748 - 41,634,267 (+)NCBIUU_Cfam_GSD_1.0
Prpf40b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494565,770,777 - 65,877,593 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365127,342,355 - 7,363,101 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365127,342,370 - 7,394,064 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRPF40B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl515,570,474 - 15,592,383 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1515,570,140 - 15,593,140 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2515,991,586 - 16,007,851 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PRPF40B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11145,868,789 - 45,890,035 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1145,875,889 - 45,889,562 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037200,234,919 - 200,256,174 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prpf40b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248162,616,362 - 2,673,059 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248162,616,614 - 2,673,330 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRPF40B
31 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_001031698.2(PRPF40B):c.1729T>C (p.Phe577Leu) single nucleotide variant Malignant melanoma [RCV000062518] Chr12:49637786 [GRCh38]
Chr12:50031569 [GRCh37]
Chr12:48317836 [NCBI36]
Chr12:12q13.12
not provided
NM_001031698.2(PRPF40B):c.1732delC (p.His578Metfs) deletion Malignant melanoma [RCV000062519] Chr12:49637789 [GRCh38]
Chr12:50031572 [GRCh37]
Chr12:48317839 [NCBI36]
Chr12:12q13.12
not provided
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:1-133851895)x3 copy number gain See cases [RCV000258805] Chr12:1..133851895 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic|likely pathogenic
GRCh37/hg19 12p11.21-q13.12(chr12:31886971-50360461)x3 copy number gain See cases [RCV000207454] Chr12:31886971..50360461 [GRCh37]
Chr12:12p11.21-q13.12
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902)x3 copy number gain See cases [RCV000510482] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:173787-133777902) copy number gain See cases [RCV000511643] Chr12:173787..133777902 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_001031698.3(PRPF40B):c.701C>T (p.Pro234Leu) single nucleotide variant Inborn genetic diseases [RCV003290656] Chr12:49633981 [GRCh38]
Chr12:50027764 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1154C>T (p.Thr385Ile) single nucleotide variant Inborn genetic diseases [RCV003249943] Chr12:49635251 [GRCh38]
Chr12:50029034 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.103C>T (p.Pro35Ser) single nucleotide variant Inborn genetic diseases [RCV003270454] Chr12:49631419 [GRCh38]
Chr12:50025202 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1919G>A (p.Arg640Gln) single nucleotide variant Inborn genetic diseases [RCV003242661] Chr12:49642269 [GRCh38]
Chr12:50036052 [GRCh37]
Chr12:12q13.12
uncertain significance
NC_000012.11:g.26370251_54361538inv inversion not specified [RCV000714265] Chr12:26370251..54361538 [GRCh37]
Chr12:12p12.1-q13.13
uncertain significance
GRCh37/hg19 12p13.33-q24.33(chr12:191619-133777645)x3 copy number gain not provided [RCV000750246] Chr12:191619..133777645 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
GRCh37/hg19 12p13.33-q24.33(chr12:621220-133779118)x3 copy number gain not provided [RCV000750253] Chr12:621220..133779118 [GRCh37]
Chr12:12p13.33-q24.33
pathogenic
NM_001031698.3(PRPF40B):c.806C>T (p.Pro269Leu) single nucleotide variant Inborn genetic diseases [RCV003241214] Chr12:49634086 [GRCh38]
Chr12:50027869 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.956C>T (p.Ser319Leu) single nucleotide variant Inborn genetic diseases [RCV003251463] Chr12:49634557 [GRCh38]
Chr12:50028340 [GRCh37]
Chr12:12q13.12
uncertain significance
GRCh37/hg19 12q13.11-13.12(chr12:49024019-50299974)x3 copy number gain not provided [RCV001259140] Chr12:49024019..50299974 [GRCh37]
Chr12:12q13.11-13.12
uncertain significance
GRCh37/hg19 12q13.12(chr12:49976064-50147736) copy number loss not specified [RCV002052995] Chr12:49976064..50147736 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.385C>T (p.Arg129Cys) single nucleotide variant Inborn genetic diseases [RCV003282122] Chr12:49633050 [GRCh38]
Chr12:50026833 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1058G>A (p.Arg353Gln) single nucleotide variant Inborn genetic diseases [RCV002840295] Chr12:49635155 [GRCh38]
Chr12:50028938 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.316G>A (p.Ala106Thr) single nucleotide variant Inborn genetic diseases [RCV002752128] Chr12:49632617 [GRCh38]
Chr12:50026400 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.2315C>T (p.Ser772Leu) single nucleotide variant Inborn genetic diseases [RCV002774438] Chr12:49643332 [GRCh38]
Chr12:50037115 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.991C>T (p.Pro331Ser) single nucleotide variant Inborn genetic diseases [RCV002906088] Chr12:49634592 [GRCh38]
Chr12:50028375 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.692C>T (p.Thr231Ile) single nucleotide variant Inborn genetic diseases [RCV002732543] Chr12:49633972 [GRCh38]
Chr12:50027755 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.553C>T (p.Arg185Trp) single nucleotide variant Inborn genetic diseases [RCV002762774] Chr12:49633520 [GRCh38]
Chr12:50027303 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.865G>A (p.Glu289Lys) single nucleotide variant Inborn genetic diseases [RCV002869051] Chr12:49634384 [GRCh38]
Chr12:50028167 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1141C>T (p.Arg381Cys) single nucleotide variant Inborn genetic diseases [RCV002737467] Chr12:49635238 [GRCh38]
Chr12:50029021 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1197G>T (p.Glu399Asp) single nucleotide variant Inborn genetic diseases [RCV002785051] Chr12:49635395 [GRCh38]
Chr12:50029178 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.497C>T (p.Ser166Leu) single nucleotide variant Inborn genetic diseases [RCV002713295] Chr12:49633464 [GRCh38]
Chr12:50027247 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.109C>G (p.Pro37Ala) single nucleotide variant Inborn genetic diseases [RCV002788337] Chr12:49631425 [GRCh38]
Chr12:50025208 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1949G>A (p.Arg650His) single nucleotide variant Inborn genetic diseases [RCV002765102] Chr12:49642299 [GRCh38]
Chr12:50036082 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1646T>C (p.Val549Ala) single nucleotide variant Inborn genetic diseases [RCV002787657] Chr12:49637555 [GRCh38]
Chr12:50031338 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.383G>A (p.Gly128Glu) single nucleotide variant Inborn genetic diseases [RCV002803004] Chr12:49633048 [GRCh38]
Chr12:50026831 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1645G>A (p.Val549Ile) single nucleotide variant Inborn genetic diseases [RCV002673623] Chr12:49637554 [GRCh38]
Chr12:50031337 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1923G>C (p.Glu641Asp) single nucleotide variant Inborn genetic diseases [RCV002649049] Chr12:49642273 [GRCh38]
Chr12:50036056 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1783G>C (p.Val595Leu) single nucleotide variant Inborn genetic diseases [RCV002679799] Chr12:49641923 [GRCh38]
Chr12:50035706 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1154C>A (p.Thr385Asn) single nucleotide variant Inborn genetic diseases [RCV002724903] Chr12:49635251 [GRCh38]
Chr12:50029034 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1519C>T (p.Arg507Trp) single nucleotide variant Inborn genetic diseases [RCV002724581] Chr12:49636808 [GRCh38]
Chr12:50030591 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1425G>C (p.Gln475His) single nucleotide variant Inborn genetic diseases [RCV003204458] Chr12:49635992 [GRCh38]
Chr12:50029775 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1286A>G (p.Lys429Arg) single nucleotide variant Inborn genetic diseases [RCV003199734] Chr12:49635853 [GRCh38]
Chr12:50029636 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.202A>G (p.Met68Val) single nucleotide variant Inborn genetic diseases [RCV003208233] Chr12:49631518 [GRCh38]
Chr12:50025301 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.2260C>T (p.Arg754Trp) single nucleotide variant Inborn genetic diseases [RCV003371951] Chr12:49643277 [GRCh38]
Chr12:50037060 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.1110G>C (p.Gln370His) single nucleotide variant Inborn genetic diseases [RCV003354825] Chr12:49635207 [GRCh38]
Chr12:50028990 [GRCh37]
Chr12:12q13.12
uncertain significance
NM_001031698.3(PRPF40B):c.994C>G (p.Arg332Gly) single nucleotide variant Inborn genetic diseases [RCV003378327] Chr12:49634595 [GRCh38]
Chr12:50028378 [GRCh37]
Chr12:12q13.12
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4516
Count of miRNA genes:1043
Interacting mature miRNAs:1296
Transcripts:ENST00000261897, ENST00000380281, ENST00000508736, ENST00000527253, ENST00000546626, ENST00000547764, ENST00000548399, ENST00000548436, ENST00000548825, ENST00000549547, ENST00000551063, ENST00000551111, ENST00000551269, ENST00000551320, ENST00000551418, ENST00000552301
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH68421  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,038,227 - 50,038,380UniSTSGRCh37
Build 361248,324,494 - 48,324,647RGDNCBI36
Celera1248,833,901 - 48,834,054RGD
Cytogenetic Map12qUniSTS
Cytogenetic Map12q13.12UniSTS
HuRef1247,069,796 - 47,069,949UniSTS
GeneMap99-GB4 RH Map12223.12UniSTS
NCBI RH Map12442.2UniSTS
STS-N63095  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,034,517 - 50,034,746UniSTSGRCh37
Build 361248,320,784 - 48,321,013RGDNCBI36
Celera1248,830,191 - 48,830,420RGD
Cytogenetic Map12qUniSTS
Cytogenetic Map12q13.12UniSTS
HuRef1247,066,086 - 47,066,315UniSTS
GeneMap99-GB4 RH Map12221.45UniSTS
RH77880  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,032,700 - 50,032,883UniSTSGRCh37
Build 361248,318,967 - 48,319,150RGDNCBI36
Celera1248,828,374 - 48,828,557RGD
Cytogenetic Map12qUniSTS
Cytogenetic Map12q13.12UniSTS
HuRef1247,064,269 - 47,064,452UniSTS
GeneMap99-GB4 RH Map12221.88UniSTS
NCBI RH Map12423.0UniSTS
RH91412  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,034,674 - 50,034,811UniSTSGRCh37
Build 361248,320,941 - 48,321,078RGDNCBI36
Celera1248,830,348 - 48,830,485RGD
Cytogenetic Map12qUniSTS
Cytogenetic Map12q13.12UniSTS
HuRef1247,066,243 - 47,066,380UniSTS
GeneMap99-GB4 RH Map12221.45UniSTS
FMNL3__6741  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,034,362 - 50,035,270UniSTSGRCh37
Build 361248,320,629 - 48,321,537RGDNCBI36
Celera1248,830,036 - 48,830,944RGD
HuRef1247,065,931 - 47,066,839UniSTS
MARC_34442-34443:1063639913:2  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,035,699 - 50,036,367UniSTSGRCh37
Build 361248,321,966 - 48,322,634RGDNCBI36
Celera1248,831,373 - 48,832,041RGD
HuRef1247,067,268 - 47,067,936UniSTS
HYPC_9405  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,037,896 - 50,038,643UniSTSGRCh37
Build 361248,324,163 - 48,324,910RGDNCBI36
Celera1248,833,570 - 48,834,317RGD
HuRef1247,069,465 - 47,070,212UniSTS
RH48030  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,038,507 - 50,038,697UniSTSGRCh37
Build 361248,324,774 - 48,324,964RGDNCBI36
Celera1248,834,181 - 48,834,371RGD
Cytogenetic Map12qUniSTS
Cytogenetic Map12q13.12UniSTS
HuRef1247,070,076 - 47,070,266UniSTS
GeneMap99-GB4 RH Map12222.2UniSTS
WI-17686  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,036,849 - 50,036,998UniSTSGRCh37
Build 361248,323,116 - 48,323,265RGDNCBI36
Celera1248,832,523 - 48,832,672RGD
Cytogenetic Map12qUniSTS
Cytogenetic Map12q13.12UniSTS
HuRef1247,068,418 - 47,068,567UniSTS
GeneMap99-GB4 RH Map12221.8UniSTS
Whitehead-RH Map12316.0UniSTS
STS-N25289  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,030,392 - 50,030,528UniSTSGRCh37
Build 361248,316,659 - 48,316,795RGDNCBI36
Celera1248,826,066 - 48,826,202RGD
Cytogenetic Map12qUniSTS
HuRef1247,061,961 - 47,062,097UniSTS
GeneMap99-GB4 RH Map12221.45UniSTS
MARC_13823-13824:1006879352:1  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371250,037,092 - 50,037,729UniSTSGRCh37
Build 361248,323,359 - 48,323,996RGDNCBI36
Celera1248,832,766 - 48,833,403RGD
HuRef1247,068,661 - 47,069,298UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 934 1120 1036 61 41 7 1434 680 1247 45 1082 734 54 56 1303
Low 1501 1314 678 551 1347 446 2922 1505 2484 374 377 879 121 1 1148 1485 5 2
Below cutoff 4 552 12 12 559 12 12 3 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_032901 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001031698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001363607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001379037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006719324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006719325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011538143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017019139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047428679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054371697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001748651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC020612 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF049525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK027117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL137459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL834216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC031917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC067364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM678253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN288346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000261897   ⟹   ENSP00000261897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,623,620 - 49,644,666 (+)Ensembl
RefSeq Acc Id: ENST00000380281   ⟹   ENSP00000369634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,623,436 - 49,644,666 (+)Ensembl
RefSeq Acc Id: ENST00000508736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,599,826 - 49,604,719 (+)Ensembl
RefSeq Acc Id: ENST00000527253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,583,561 - 49,604,731 (+)Ensembl
RefSeq Acc Id: ENST00000546626
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,641,946 - 49,643,245 (+)Ensembl
RefSeq Acc Id: ENST00000547764
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,568,236 - 49,600,142 (+)Ensembl
RefSeq Acc Id: ENST00000548399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,637,557 - 49,642,304 (+)Ensembl
RefSeq Acc Id: ENST00000548436
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,623,570 - 49,634,819 (+)Ensembl
RefSeq Acc Id: ENST00000548825   ⟹   ENSP00000448073
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,623,561 - 49,644,665 (+)Ensembl
RefSeq Acc Id: ENST00000549547   ⟹   ENSP00000449485
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,637,819 - 49,643,914 (+)Ensembl
RefSeq Acc Id: ENST00000551063   ⟹   ENSP00000449569
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,568,372 - 49,630,625 (+)Ensembl
RefSeq Acc Id: ENST00000551111
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,630,544 - 49,633,817 (+)Ensembl
RefSeq Acc Id: ENST00000551269
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,642,635 - 49,643,811 (+)Ensembl
RefSeq Acc Id: ENST00000551320
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,632,729 - 49,633,931 (+)Ensembl
RefSeq Acc Id: ENST00000551418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,623,414 - 49,632,037 (+)Ensembl
RefSeq Acc Id: ENST00000552301
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1249,568,218 - 49,583,264 (+)Ensembl
RefSeq Acc Id: NM_001031698   ⟹   NP_001026868
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
GRCh371250,017,197 - 50,038,452 (+)NCBI
Build 361248,310,594 - 48,324,716 (+)NCBI Archive
Celera1248,813,077 - 48,834,123 (+)RGD
HuRef1247,049,273 - 47,070,021 (+)NCBI
CHM1_11249,983,486 - 50,004,741 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001363607   ⟹   NP_001350536
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379030   ⟹   NP_001365959
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379031   ⟹   NP_001365960
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379032   ⟹   NP_001365961
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379033   ⟹   NP_001365962
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379034   ⟹   NP_001365963
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379035   ⟹   NP_001365964
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379036   ⟹   NP_001365965
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001379037   ⟹   NP_001365966
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: NM_012272   ⟹   NP_036404
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
Build 361248,303,670 - 48,324,716 (+)NCBI Archive
Celera1248,813,077 - 48,834,123 (+)RGD
CHM1_11249,983,692 - 50,004,741 (+)NCBI
T2T-CHM13v2.01249,586,570 - 49,607,674 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006719324   ⟹   XP_006719387
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,624,825 - 49,644,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006719325   ⟹   XP_006719388
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,624,825 - 49,644,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011538139   ⟹   XP_011536441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011538140   ⟹   XP_011536442
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011538143   ⟹   XP_011536445
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017019135   ⟹   XP_016874624
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,622,717 - 49,644,665 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017019138   ⟹   XP_016874627
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,624,820 - 49,643,335 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047428674   ⟹   XP_047284630
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,768 - 49,644,665 (+)NCBI
RefSeq Acc Id: XM_047428675   ⟹   XP_047284631
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,784 - 49,644,665 (+)NCBI
RefSeq Acc Id: XM_047428676   ⟹   XP_047284632
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,768 - 49,644,665 (+)NCBI
RefSeq Acc Id: XM_047428677   ⟹   XP_047284633
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,644,665 (+)NCBI
RefSeq Acc Id: XM_047428678   ⟹   XP_047284634
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,622,646 - 49,644,665 (+)NCBI
RefSeq Acc Id: XM_047428679   ⟹   XP_047284635
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,624,819 - 49,639,096 (+)NCBI
RefSeq Acc Id: XM_054371685   ⟹   XP_054227660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,587,834 - 49,607,674 (+)NCBI
RefSeq Acc Id: XM_054371686   ⟹   XP_054227661
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,587,834 - 49,607,674 (+)NCBI
RefSeq Acc Id: XM_054371687   ⟹   XP_054227662
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,777 - 49,607,675 (+)NCBI
RefSeq Acc Id: XM_054371688   ⟹   XP_054227663
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,570 - 49,607,675 (+)NCBI
RefSeq Acc Id: XM_054371689   ⟹   XP_054227664
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,570 - 49,607,675 (+)NCBI
RefSeq Acc Id: XM_054371690   ⟹   XP_054227665
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,793 - 49,607,674 (+)NCBI
RefSeq Acc Id: XM_054371691   ⟹   XP_054227666
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,777 - 49,607,674 (+)NCBI
RefSeq Acc Id: XM_054371692   ⟹   XP_054227667
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,570 - 49,607,675 (+)NCBI
RefSeq Acc Id: XM_054371693   ⟹   XP_054227668
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,586,570 - 49,607,675 (+)NCBI
RefSeq Acc Id: XM_054371694   ⟹   XP_054227669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,585,726 - 49,607,675 (+)NCBI
RefSeq Acc Id: XM_054371695   ⟹   XP_054227670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,585,655 - 49,607,674 (+)NCBI
RefSeq Acc Id: XM_054371696   ⟹   XP_054227671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,587,829 - 49,606,344 (+)NCBI
RefSeq Acc Id: XM_054371697   ⟹   XP_054227672
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01249,587,828 - 49,602,105 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001026868 (Get FASTA)   NCBI Sequence Viewer  
  NP_001350536 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365959 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365960 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365961 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365962 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365963 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365964 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365965 (Get FASTA)   NCBI Sequence Viewer  
  NP_001365966 (Get FASTA)   NCBI Sequence Viewer  
  NP_036404 (Get FASTA)   NCBI Sequence Viewer  
  XP_006719387 (Get FASTA)   NCBI Sequence Viewer  
  XP_006719388 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536441 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536442 (Get FASTA)   NCBI Sequence Viewer  
  XP_011536445 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874624 (Get FASTA)   NCBI Sequence Viewer  
  XP_016874627 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284630 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284631 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284632 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284633 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284634 (Get FASTA)   NCBI Sequence Viewer  
  XP_047284635 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227660 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227661 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227662 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227663 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227664 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227665 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227666 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227667 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227668 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227669 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227670 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227671 (Get FASTA)   NCBI Sequence Viewer  
  XP_054227672 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC27503 (Get FASTA)   NCBI Sequence Viewer  
  AAH50398 (Get FASTA)   NCBI Sequence Viewer  
  AAH67364 (Get FASTA)   NCBI Sequence Viewer  
  BAB15662 (Get FASTA)   NCBI Sequence Viewer  
  CAB70747 (Get FASTA)   NCBI Sequence Viewer  
  CAD38898 (Get FASTA)   NCBI Sequence Viewer  
  EAW58084 (Get FASTA)   NCBI Sequence Viewer  
  EAW58085 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000261897
  ENSP00000261897.1
  ENSP00000369634
  ENSP00000369634.2
  ENSP00000448073
  ENSP00000448073.2
  ENSP00000449485.1
GenBank Protein Q6NWY9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_036404   ⟸   NM_012272
- Peptide Label: isoform 2
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001026868   ⟸   NM_001031698
- Peptide Label: isoform 1
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   F8VU11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006719387   ⟸   XM_006719324
- Peptide Label: isoform X1
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006719388   ⟸   XM_006719325
- Peptide Label: isoform X2
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011536441   ⟸   XM_011538139
- Peptide Label: isoform X4
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011536442   ⟸   XM_011538140
- Peptide Label: isoform X5
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011536445   ⟸   XM_011538143
- Peptide Label: isoform X8
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016874624   ⟸   XM_017019135
- Peptide Label: isoform X10
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016874627   ⟸   XM_017019138
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: NP_001350536   ⟸   NM_001363607
- Peptide Label: isoform 3
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot),   A0A8Z5ADK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001365959   ⟸   NM_001379030
- Peptide Label: isoform 4
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365962   ⟸   NM_001379033
- Peptide Label: isoform 7
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365963   ⟸   NM_001379034
- Peptide Label: isoform 8
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365960   ⟸   NM_001379031
- Peptide Label: isoform 5
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365961   ⟸   NM_001379032
- Peptide Label: isoform 6
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365964   ⟸   NM_001379035
- Peptide Label: isoform 9
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365965   ⟸   NM_001379036
- Peptide Label: isoform 10
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001365966   ⟸   NM_001379037
- Peptide Label: isoform 11
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSP00000448073   ⟸   ENST00000548825
RefSeq Acc Id: ENSP00000449485   ⟸   ENST00000549547
RefSeq Acc Id: ENSP00000261897   ⟸   ENST00000261897
RefSeq Acc Id: ENSP00000449569   ⟸   ENST00000551063
RefSeq Acc Id: ENSP00000369634   ⟸   ENST00000380281
RefSeq Acc Id: XP_047284634   ⟸   XM_047428678
- Peptide Label: isoform X11
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047284633   ⟸   XM_047428677
- Peptide Label: isoform X9
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047284630   ⟸   XM_047428674
- Peptide Label: isoform X3
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047284632   ⟸   XM_047428676
- Peptide Label: isoform X7
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047284631   ⟸   XM_047428675
- Peptide Label: isoform X6
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047284635   ⟸   XM_047428679
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054227670   ⟸   XM_054371695
- Peptide Label: isoform X11
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227669   ⟸   XM_054371694
- Peptide Label: isoform X10
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227663   ⟸   XM_054371688
- Peptide Label: isoform X4
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227664   ⟸   XM_054371689
- Peptide Label: isoform X5
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227667   ⟸   XM_054371692
- Peptide Label: isoform X8
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227668   ⟸   XM_054371693
- Peptide Label: isoform X9
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227662   ⟸   XM_054371687
- Peptide Label: isoform X3
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227666   ⟸   XM_054371691
- Peptide Label: isoform X7
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227665   ⟸   XM_054371690
- Peptide Label: isoform X6
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227672   ⟸   XM_054371697
- Peptide Label: isoform X13
RefSeq Acc Id: XP_054227671   ⟸   XM_054371696
- Peptide Label: isoform X12
RefSeq Acc Id: XP_054227660   ⟸   XM_054371685
- Peptide Label: isoform X1
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054227661   ⟸   XM_054371686
- Peptide Label: isoform X2
- UniProtKB: Q9NT95 (UniProtKB/Swiss-Prot),   Q9H5G4 (UniProtKB/Swiss-Prot),   Q8NCZ1 (UniProtKB/Swiss-Prot),   Q6ZWB3 (UniProtKB/Swiss-Prot),   Q6PI09 (UniProtKB/Swiss-Prot),   Q6NWY9 (UniProtKB/Swiss-Prot),   O75401 (UniProtKB/Swiss-Prot)
Protein Domains
FF   WW

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6NWY9-F1-model_v2 AlphaFold Q6NWY9 1-871 view protein structure

Promoters
RGD ID:6790384
Promoter ID:HG_KWN:15567
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_012272,   UC001RUP.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,302,661 - 48,304,122 (+)MPROMDB
RGD ID:6790387
Promoter ID:HG_KWN:15569
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:UC001RUS.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,311,271 - 48,312,322 (+)MPROMDB
RGD ID:6789912
Promoter ID:HG_KWN:15570
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   K562,   Lymphoblastoid
Transcripts:ENST00000395012
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,316,621 - 48,318,002 (+)MPROMDB
RGD ID:6810380
Promoter ID:HG_ACW:16852
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:PRPF40B.IAPR07,   PRPF40B.KAPR07
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,321,771 - 48,322,271 (+)MPROMDB
RGD ID:6815954
Promoter ID:HG_SPT:14042
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:AL529313,   AL543192,   BF108696,   BF932401,   BM665858,   BM678253,   BM678336,   BM973544,   BQ018995,   CA418818,   CA445176,   CA748901
Position:
Human AssemblyChrPosition (strand)Source
Build 361248,324,221 - 48,324,721 (-)MPROMDB
RGD ID:7223849
Promoter ID:EPDNEW_H17670
Type:multiple initiation site
Name:PRPF40B_1
Description:pre-mRNA processing factor 40 homolog B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381249,623,561 - 49,623,621EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25031 AgrOrtholog
COSMIC PRPF40B COSMIC
Ensembl Genes ENSG00000110844 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000261897 ENTREZGENE
  ENST00000261897.5 UniProtKB/Swiss-Prot
  ENST00000380281 ENTREZGENE
  ENST00000380281.6 UniProtKB/TrEMBL
  ENST00000548825 ENTREZGENE
  ENST00000548825.7 UniProtKB/TrEMBL
  ENST00000549547.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.440 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.20.70.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000110844 GTEx
HGNC ID HGNC:25031 ENTREZGENE
Human Proteome Map PRPF40B Human Proteome Map
InterPro FF_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  FF_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prp40-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:25766 UniProtKB/Swiss-Prot
NCBI Gene 25766 ENTREZGENE
PANTHER PRE-MRNA-PROCESSING FACTOR 40 HOMOLOG B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11864 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00397 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PF01846 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA143485582 PharmGKB
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE PS51676 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WW_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SM00441 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00456 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF51045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF81698 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8Z5ADK7 ENTREZGENE, UniProtKB/TrEMBL
  F8VU11 ENTREZGENE, UniProtKB/TrEMBL
  H0YII7_HUMAN UniProtKB/TrEMBL
  O75401 ENTREZGENE
  PR40B_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q6PI09 ENTREZGENE
  Q6ZWB3 ENTREZGENE
  Q8NCZ1 ENTREZGENE
  Q9H5G4 ENTREZGENE
  Q9NT95 ENTREZGENE
UniProt Secondary O75401 UniProtKB/Swiss-Prot
  Q6PI09 UniProtKB/Swiss-Prot
  Q6ZWB3 UniProtKB/Swiss-Prot
  Q8NCZ1 UniProtKB/Swiss-Prot
  Q9H5G4 UniProtKB/Swiss-Prot
  Q9NT95 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-01 PRPF40B  pre-mRNA processing factor 40 homolog B  PRPF40B  PRP40 homolog, pre-mRNA processing factor B  Symbol and/or name change 5135510 APPROVED
2015-07-14 PRPF40B  PRP40 homolog, pre-mRNA processing factor B  PRPF40B  PRP40 pre-mRNA processing factor 40 homolog B (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED