LSM11 (LSM11, U7 small nuclear RNA associated) - Rat Genome Database

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Gene: LSM11 (LSM11, U7 small nuclear RNA associated) Homo sapiens
Analyze
Symbol: LSM11
Name: LSM11, U7 small nuclear RNA associated
RGD ID: 1354131
HGNC Page HGNC:30860
Description: Enables U7 snRNA binding activity. Involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; positive regulation of G1/S transition of mitotic cell cycle; and regulation of chromatin organization. Located in nuclear body. Part of U7 snRNP and telomerase holoenzyme complex. Implicated in Aicardi-Goutieres syndrome.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2210404M20Rik; AGS8; FLJ38273; LSM11 homolog, U7 small nuclear RNA associated; U7 snRNA-associated Sm-like protein LSm11
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385157,743,712 - 157,760,709 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5157,743,712 - 157,760,709 (+)EnsemblGRCh38hg38GRCh38
GRCh375157,170,720 - 157,187,717 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365157,103,333 - 157,116,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 345157,103,332 - 157,116,324NCBI
Celera5153,197,357 - 153,210,338 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5152,259,367 - 152,272,348 (+)NCBIHuRef
CHM1_15156,603,456 - 156,616,438 (+)NCBICHM1_1
T2T-CHM13v2.05158,262,719 - 158,279,702 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
protein binding  (IPI)
RNA binding  (IEA)
U7 snRNA binding  (IBA,IDA,IEA,IPI)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Abnormal cerebral white matter morphology  (IAGP)
Abnormal pyramidal sign  (IAGP)
Abnormality of extrapyramidal motor function  (IAGP)
Abnormality of eye movement  (IAGP)
Acrocyanosis  (IAGP)
Aortic aneurysm  (IAGP)
Arrhinencephaly  (IAGP)
Arthritis  (IAGP)
Autoimmunity  (IAGP)
Autosomal recessive inheritance  (IAGP)
Axial hypotonia  (IAGP)
Basal ganglia calcification  (IAGP)
Brain atrophy  (IAGP)
Calcification of the aorta  (IAGP)
Cardiomegaly  (IAGP)
Cerebral atrophy  (IAGP)
Cerebral calcification  (IAGP)
Chilblains  (IAGP)
Chronic CSF lymphocytosis  (IAGP)
Chronic lymphatic leukemia  (IAGP)
Congenital onset  (IAGP)
Convex nasal ridge  (IAGP)
CSF pleocytosis  (IAGP)
Cutis marmorata  (IAGP)
Degeneration of the striatum  (IAGP)
Demyelinating peripheral neuropathy  (IAGP)
Developmental glaucoma  (IAGP)
Developmental regression  (IAGP)
Diabetes mellitus  (IAGP)
Difficulty walking  (IAGP)
Dry skin  (IAGP)
Dystonia  (IAGP)
Elevated circulating hepatic transaminase concentration  (IAGP)
Enchondroma  (IAGP)
Extrapyramidal muscular rigidity  (IAGP)
Eyelid coloboma  (IAGP)
Glaucoma  (IAGP)
Global developmental delay  (IAGP)
Headache  (IAGP)
Hemiplegia/hemiparesis  (IAGP)
Hepatosplenomegaly  (IAGP)
Hoarse voice  (IAGP)
Hypertonia  (IAGP)
Hypertrophic cardiomyopathy  (IAGP)
Hypoplasia of the corpus callosum  (IAGP)
Hypoplastic male external genitalia  (IAGP)
Hypothyroidism  (IAGP)
Increased circulating interferon-gamma concentration  (IAGP)
Increased CSF interferon alpha  (IAGP)
Intellectual disability, profound  (IAGP)
Irritability  (IAGP)
Leukodystrophy  (IAGP)
Lipoatrophy  (IAGP)
Loss of speech  (IAGP)
Low-set ears  (IAGP)
Microcephaly  (IAGP)
Micropenis  (IAGP)
Moyamoya phenomenon  (IAGP)
Multifocal cerebral white matter abnormalities  (IAGP)
Multiple joint contractures  (IAGP)
Muscle stiffness  (IAGP)
Myositis  (IAGP)
Neonatal alloimmune thrombocytopenia  (IAGP)
Nystagmus  (IAGP)
Panniculitis  (IAGP)
Plagiocephaly  (IAGP)
Porencephalic cyst  (IAGP)
Prolonged neonatal jaundice  (IAGP)
Ptosis  (IAGP)
Raynaud phenomenon  (IAGP)
Scoliosis  (IAGP)
Seizure  (IAGP)
Severe global developmental delay  (IAGP)
Short stature  (IAGP)
Spastic paraparesis  (IAGP)
Spastic tetraplegia  (IAGP)
Spasticity  (IAGP)
Tremor  (IAGP)
Unexplained fevers  (IAGP)
Ventriculomegaly  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:11574479   PMID:12975319   PMID:14702039   PMID:15489334   PMID:16087681   PMID:16714279   PMID:16914750   PMID:18029348   PMID:18082603   PMID:19322201   PMID:19928837   PMID:21873635  
PMID:22939629   PMID:23071092   PMID:26496610   PMID:26673895   PMID:26972000   PMID:28431233   PMID:28514442   PMID:28977470   PMID:29395067   PMID:29509190   PMID:31527615   PMID:31819999  
PMID:32203420   PMID:32296183   PMID:33230297   PMID:33961781   PMID:34079125   PMID:34373451   PMID:34728620   PMID:35271311  


Genomics

Comparative Map Data
LSM11
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385157,743,712 - 157,760,709 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5157,743,712 - 157,760,709 (+)EnsemblGRCh38hg38GRCh38
GRCh375157,170,720 - 157,187,717 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365157,103,333 - 157,116,324 (+)NCBINCBI36Build 36hg18NCBI36
Build 345157,103,332 - 157,116,324NCBI
Celera5153,197,357 - 153,210,338 (+)NCBICelera
Cytogenetic Map5q33.3NCBI
HuRef5152,259,367 - 152,272,348 (+)NCBIHuRef
CHM1_15156,603,456 - 156,616,438 (+)NCBICHM1_1
T2T-CHM13v2.05158,262,719 - 158,279,702 (+)NCBIT2T-CHM13v2.0
Lsm11
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391145,819,096 - 45,835,762 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1145,819,096 - 45,835,762 (-)EnsemblGRCm39 Ensembl
GRCm381145,928,266 - 45,944,996 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1145,928,269 - 45,944,935 (-)EnsemblGRCm38mm10GRCm38
MGSCv371145,741,771 - 45,758,437 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361145,774,503 - 45,788,358 (-)NCBIMGSCv36mm8
Celera1150,516,932 - 50,533,598 (-)NCBICelera
Cytogenetic Map11B1.1NCBI
cM Map1127.46NCBI
Lsm11
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81030,869,168 - 30,887,275 (-)NCBIGRCr8
mRatBN7.21030,367,841 - 30,385,956 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1030,370,727 - 30,385,944 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1035,100,167 - 35,113,094 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0103,638,608 - 3,651,535 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01030,074,335 - 30,087,280 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01031,023,561 - 31,041,700 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1031,028,697 - 31,041,626 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01030,844,898 - 30,862,998 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41031,070,515 - 31,084,314 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1029,826,974 - 29,839,899 (-)NCBICelera
Cytogenetic Map10q21NCBI
Lsm11
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540811,870,524 - 11,879,041 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540811,871,335 - 11,879,041 (+)NCBIChiLan1.0ChiLan1.0
LSM11
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24152,923,995 - 152,978,389 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15151,063,534 - 151,117,998 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05153,129,385 - 153,182,170 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15159,749,818 - 159,767,000 (+)NCBIpanpan1.1PanPan1.1panPan2
LSM11
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1452,532,660 - 52,546,273 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha452,423,864 - 52,437,536 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0452,967,380 - 52,981,084 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl452,972,260 - 52,981,060 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1452,794,903 - 52,808,529 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0452,901,127 - 52,914,811 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0453,418,930 - 53,432,599 (-)NCBIUU_Cfam_GSD_1.0
Lsm11
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213106,996,960 - 107,009,451 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365155,448,490 - 5,459,295 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSM11
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1665,590,120 - 65,600,566 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11665,587,502 - 65,600,605 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21671,438,534 - 71,452,600 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LSM11
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12360,151,661 - 60,166,074 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2360,152,784 - 60,164,483 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603417,464,320 - 17,478,237 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lsm11
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473331,723,022 - 31,730,724 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473331,720,054 - 31,730,809 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LSM11
29 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 5q32-35.3(chr5:149714592-181272151)x3 copy number gain See cases [RCV000051863] Chr5:149714592..181272151 [GRCh38]
Chr5:149094155..180699152 [GRCh37]
Chr5:149074348..180631758 [NCBI36]
Chr5:5q32-35.3		 pathogenic
GRCh38/hg38 5q33.1-34(chr5:152761187-167248053)x1 copy number loss See cases [RCV000052144] Chr5:152761187..167248053 [GRCh38]
Chr5:152140747..166675058 [GRCh37]
Chr5:152120940..166607636 [NCBI36]
Chr5:5q33.1-34		 pathogenic
GRCh38/hg38 5q33.1-34(chr5:153195314-164014005)x1 copy number loss See cases [RCV000052145] Chr5:153195314..164014005 [GRCh38]
Chr5:152574874..163441011 [GRCh37]
Chr5:152555067..163373589 [NCBI36]
Chr5:5q33.1-34		 pathogenic
GRCh38/hg38 5q33.3-35.3(chr5:156825512-181269805)x3 copy number gain See cases [RCV000133847] Chr5:156825512..181269805 [GRCh38]
Chr5:156252523..180696806 [GRCh37]
Chr5:156185101..180629412 [NCBI36]
Chr5:5q33.3-35.3		 pathogenic
GRCh38/hg38 5q33.1-34(chr5:152443869-166104392)x1 copy number loss See cases [RCV000138282] Chr5:152443869..166104392 [GRCh38]
Chr5:151823430..165531397 [GRCh37]
Chr5:151803623..165463975 [NCBI36]
Chr5:5q33.1-34		 pathogenic
GRCh37/hg19 5q33.2-35.1(chr5:154886174-169757448)x1 copy number loss See cases [RCV000240059] Chr5:154886174..169757448 [GRCh37]
Chr5:5q33.2-35.1		 pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3 copy number gain not provided [RCV000487658] Chr5:94844077..178830410 [GRCh37]
Chr5:5q15-35.3		 likely benign
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3 copy number gain See cases [RCV000449349] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789) copy number gain See cases [RCV000510723] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3 copy number gain See cases [RCV000448245] Chr5:106716357..180687338 [GRCh37]
Chr5:5q21.3-35.3		 pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1 copy number loss See cases [RCV000511978] Chr5:17628741..176575720 [GRCh37]
Chr5:5p15.1-q35.2		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3 copy number gain See cases [RCV000512039] Chr5:113577..180719789 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
NM_173491.4(LSM11):c.170C>A (p.Ala57Glu) single nucleotide variant Inborn genetic diseases [RCV003282474] Chr5:157743920 [GRCh38]
Chr5:157170928 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.742T>C (p.Ser248Pro) single nucleotide variant Inborn genetic diseases [RCV003253001] Chr5:157754923 [GRCh38]
Chr5:157181931 [GRCh37]
Chr5:5q33.3		 uncertain significance
GRCh37/hg19 5q33.3(chr5:156911673-157225044)x3 copy number gain not provided [RCV000682603] Chr5:156911673..157225044 [GRCh37]
Chr5:5q33.3		 uncertain significance
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3 copy number gain not provided [RCV000744317] Chr5:13648..180905029 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3 copy number gain not provided [RCV000744323] Chr5:25328..180693344 [GRCh37]
Chr5:5p15.33-q35.3		 pathogenic
GRCh37/hg19 5q33.2-35.3(chr5:155344802-180693344)x3 copy number gain not provided [RCV000745284] Chr5:155344802..180693344 [GRCh37]
Chr5:5q33.2-35.3		 pathogenic
NM_173491.4(LSM11):c.631G>A (p.Gly211Ser) single nucleotide variant Aicardi-Goutieres syndrome 8 [RCV001568350] Chr5:157754046 [GRCh38]
Chr5:157181054 [GRCh37]
Chr5:5q33.3		 pathogenic
GRCh37/hg19 5q32-35.3(chr5:149010383-180719789) copy number gain Hunter-McAlpine craniosynostosis [RCV002280612] Chr5:149010383..180719789 [GRCh37]
Chr5:5q32-35.3		 pathogenic
GRCh37/hg19 5q33.3-35.1(chr5:156347980-169959880)x1 copy number loss not provided [RCV001005746] Chr5:156347980..169959880 [GRCh37]
Chr5:5q33.3-35.1		 pathogenic
GRCh37/hg19 5q33.3-35.1(chr5:156597181-171166353)x3 copy number gain not provided [RCV000845588] Chr5:156597181..171166353 [GRCh37]
Chr5:5q33.3-35.1		 pathogenic
GRCh37/hg19 5q33.3-34(chr5:155970607-162450579)x1 copy number loss not provided [RCV001825167] Chr5:155970607..162450579 [GRCh37]
Chr5:5q33.3-34		 not provided
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910) copy number gain not specified [RCV002053526] Chr5:130125085..157574910 [GRCh37]
Chr5:5q23.3-33.3		 pathogenic
NM_173491.4(LSM11):c.1014A>C (p.Val338=) single nucleotide variant not provided [RCV002214366] Chr5:157755195 [GRCh38]
Chr5:157182203 [GRCh37]
Chr5:5q33.3		 likely benign
GRCh37/hg19 5q33.1-35.2(chr5:150535183-172906793)x3 copy number gain not provided [RCV002474507] Chr5:150535183..172906793 [GRCh37]
Chr5:5q33.1-35.2		 pathogenic
GRCh37/hg19 5q33.3-34(chr5:156786013-162945369)x1 copy number loss not provided [RCV002512289] Chr5:156786013..162945369 [GRCh37]
Chr5:5q33.3-34		 likely pathogenic
NM_173491.4(LSM11):c.17G>A (p.Arg6Gln) single nucleotide variant Inborn genetic diseases [RCV002844852] Chr5:157743767 [GRCh38]
Chr5:157170775 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.323A>C (p.Glu108Ala) single nucleotide variant Inborn genetic diseases [RCV002692604] Chr5:157744073 [GRCh38]
Chr5:157171081 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.254G>T (p.Gly85Val) single nucleotide variant Inborn genetic diseases [RCV002870523] Chr5:157744004 [GRCh38]
Chr5:157171012 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.10C>T (p.Arg4Trp) single nucleotide variant Inborn genetic diseases [RCV002822780] Chr5:157743760 [GRCh38]
Chr5:157170768 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.535C>T (p.Leu179Phe) single nucleotide variant Inborn genetic diseases [RCV002782574] Chr5:157751476 [GRCh38]
Chr5:157178484 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.647G>A (p.Arg216Gln) single nucleotide variant Inborn genetic diseases [RCV002888625] Chr5:157754062 [GRCh38]
Chr5:157181070 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.50C>G (p.Ala17Gly) single nucleotide variant Inborn genetic diseases [RCV002929634] Chr5:157743800 [GRCh38]
Chr5:157170808 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.206G>A (p.Gly69Asp) single nucleotide variant Inborn genetic diseases [RCV002916991] Chr5:157743956 [GRCh38]
Chr5:157170964 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.1025A>T (p.His342Leu) single nucleotide variant Inborn genetic diseases [RCV002984318] Chr5:157755206 [GRCh38]
Chr5:157182214 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.242C>G (p.Ala81Gly) single nucleotide variant Inborn genetic diseases [RCV002985963] Chr5:157743992 [GRCh38]
Chr5:157171000 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.268C>A (p.Pro90Thr) single nucleotide variant Inborn genetic diseases [RCV002803747] Chr5:157744018 [GRCh38]
Chr5:157171026 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.305C>G (p.Ala102Gly) single nucleotide variant Inborn genetic diseases [RCV002673362] Chr5:157744055 [GRCh38]
Chr5:157171063 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.17G>C (p.Arg6Pro) single nucleotide variant Inborn genetic diseases [RCV002674647] Chr5:157743767 [GRCh38]
Chr5:157170775 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.317A>C (p.Asp106Ala) single nucleotide variant Inborn genetic diseases [RCV002722818] Chr5:157744067 [GRCh38]
Chr5:157171075 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.325C>T (p.Arg109Cys) single nucleotide variant Inborn genetic diseases [RCV003199490] Chr5:157744075 [GRCh38]
Chr5:157171083 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.721T>C (p.Ser241Pro) single nucleotide variant Inborn genetic diseases [RCV003208999] Chr5:157754902 [GRCh38]
Chr5:157181910 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.544G>A (p.Val182Ile) single nucleotide variant Inborn genetic diseases [RCV003345360] Chr5:157751485 [GRCh38]
Chr5:157178493 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.974G>A (p.Arg325His) single nucleotide variant Inborn genetic diseases [RCV003360028] Chr5:157755155 [GRCh38]
Chr5:157182163 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.881G>C (p.Arg294Thr) single nucleotide variant Inborn genetic diseases [RCV003376656] Chr5:157755062 [GRCh38]
Chr5:157182070 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.29C>G (p.Ser10Trp) single nucleotide variant Inborn genetic diseases [RCV003346906] Chr5:157743779 [GRCh38]
Chr5:157170787 [GRCh37]
Chr5:5q33.3		 uncertain significance
NM_173491.4(LSM11):c.228G>A (p.Arg76=) single nucleotide variant not specified [RCV003489166] Chr5:157743978 [GRCh38]
Chr5:157170986 [GRCh37]
Chr5:5q33.3		 benign
NM_173491.4(LSM11):c.108C>T (p.Ala36=) single nucleotide variant not provided [RCV003429954] Chr5:157743858 [GRCh38]
Chr5:157170866 [GRCh37]
Chr5:5q33.3		 likely benign
NM_173491.4(LSM11):c.1062G>A (p.Leu354=) single nucleotide variant not provided [RCV003429956] Chr5:157755243 [GRCh38]
Chr5:157182251 [GRCh37]
Chr5:5q33.3		 likely benign
NM_173491.4(LSM11):c.18G>C (p.Arg6=) single nucleotide variant not provided [RCV003429953] Chr5:157743768 [GRCh38]
Chr5:157170776 [GRCh37]
Chr5:5q33.3		 likely benign
NM_173491.4(LSM11):c.675A>G (p.Leu225=) single nucleotide variant not provided [RCV003429955] Chr5:157754856 [GRCh38]
Chr5:157181864 [GRCh37]
Chr5:5q33.3		 likely benign
NM_173491.4(LSM11):c.843C>G (p.Val281=) single nucleotide variant LSM11-related condition [RCV003907160] Chr5:157755024 [GRCh38]
Chr5:157182032 [GRCh37]
Chr5:5q33.3		 likely benign
NM_173491.4(LSM11):c.208G>A (p.Gly70Ser) single nucleotide variant LSM11-related condition [RCV003917094] Chr5:157743958 [GRCh38]
Chr5:157170966 [GRCh37]
Chr5:5q33.3		 likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2261
Count of miRNA genes:1074
Interacting mature miRNAs:1316
Transcripts:ENST00000286307
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
LSM11__7339  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375157,182,899 - 157,183,819UniSTSGRCh37
Build 365157,115,477 - 157,116,397RGDNCBI36
Celera5153,209,491 - 153,210,411RGD
HuRef5152,271,501 - 152,272,421UniSTS
AFMa205yh9  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh375157,174,955 - 157,175,089UniSTSGRCh37
Build 365157,107,533 - 157,107,667RGDNCBI36
Celera5153,201,557 - 153,201,689RGD
Cytogenetic Map5q33.3UniSTS
HuRef5152,263,568 - 152,263,694UniSTS
Whitehead-RH Map5508.2UniSTS
NCBI RH Map5891.6UniSTS
L18426  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map2q37UniSTS
Cytogenetic Map5q31.3UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10p11UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map3q13.31UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map9q34.1UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map19p13.1-p12UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map2p23.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map15q26.3UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map13q32.3UniSTS
Cytogenetic Map17q21-q22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map5p13UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map13q11UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3p25.1UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p25UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map7p22UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map19q13.13UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map6p22.3-p22.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic MapXp11UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map4q22.1-q23UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map18q22.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map12q24.1-q24.3UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map3q13.13UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map9p24.2UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map1q42.1-q43UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map6q25.1-q26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map7p11UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.1UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map1q41-q42.2UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map11p11.11UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map3q21UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map13q12-q14UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map14q24.1UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map11p15.1UniSTS
Cytogenetic Map11q24UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map8p11.2UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map21q22.1UniSTS
Cytogenetic Map4q25-q27UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map3q25.31UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map11p15UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map6q25UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map4q21.22UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map21q21.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map12p12.3UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map5p13.2UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map22q12UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map2q32.1UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map1p13-p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map7p22.3UniSTS
Cytogenetic Map10q21.1UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map1q25UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map20p11.21UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map16p13.13-p13.12UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map14q24UniSTS
Cytogenetic Map14q22-q24UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map10q11UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map12q21.31UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map11q14.2UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic MapXq21.1UniSTS
Cytogenetic Map9p21.1UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
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Cytogenetic Map13q32.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map8q21.2UniSTS
Cytogenetic Map2q24.1UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map2q23.3UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map15q14-q15UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map14q31UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map8p12-p11UniSTS
Cytogenetic Map18p11.2UniSTS
Cytogenetic Map7p11.1UniSTS
Cytogenetic Map1q31-q32UniSTS
Cytogenetic Map2q12UniSTS
Cytogenetic Map3p21.32UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map2q33-q34UniSTS
Cytogenetic Map6q24.1UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map15q13.3UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map12p12.1UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map17q11-q21UniSTS
Cytogenetic Map12q23UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map14q23.2UniSTS
Cytogenetic Map7q31.1-q31.2UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map15q21.2UniSTS
Cytogenetic Map3p26.1-p25.1UniSTS
Cytogenetic Map5q35UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map6q16.3UniSTS
Cytogenetic Map17q24-q25UniSTS
Cytogenetic MapXq12UniSTS
Cytogenetic MapXq27.1UniSTS
Cytogenetic Map8q12.3UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map5q15UniSTS
Cytogenetic Map5q35.1UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map4q35.2UniSTS
Cytogenetic Map3p26.1UniSTS
Cytogenetic Map3p11.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map2q21.2UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map18q12.3UniSTS
Cytogenetic Map18p11.3UniSTS
Cytogenetic Map17q11.1UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map13q12.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map12q12-q13UniSTS
Cytogenetic Map12q14UniSTS
Cytogenetic Map5q33.1UniSTS
Cytogenetic Map2q32-q34UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map2p15-p13UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map20p11UniSTS
Cytogenetic Map6q23-q24UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map6p12.3-p11.2UniSTS
Cytogenetic Map6q16.1-q16.3UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map7q31.2UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map3q25.2UniSTS
Cytogenetic Map3p21.1-p14.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map3q12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map3q22.3UniSTS
Cytogenetic Map7q21.3UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map22q12-q13UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map18q21.3UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map8q12UniSTS
Cytogenetic Map4q28-q32UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map6p23UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map1q24.3UniSTS
Cytogenetic Map9q33.1UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map2p16.2UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map1p36.2UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map13q22.1UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map4q21UniSTS
Cytogenetic Map13q12.2UniSTS
Cytogenetic Map9q31-q33UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map1q23UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map11q13.3UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map11q12.1UniSTS
Cytogenetic Map3p26UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map8p21UniSTS
Cytogenetic Map19q13.1-q13.2UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map7q36.2UniSTS
Cytogenetic Map4q32.3UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map10q26.1UniSTS
Cytogenetic Map9q32-q33.3UniSTS
Cytogenetic Map9q22.1-q22.2UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map5q31-q34UniSTS
Cytogenetic Map9q33-q34UniSTS
Cytogenetic Map5q11.2-q13.2UniSTS
Cytogenetic Map13q32UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map5q22UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic MapXq13.3UniSTS
Cytogenetic Map9q31.3UniSTS
Cytogenetic Map3p26.3UniSTS
Cytogenetic Map2q11.1UniSTS
Cytogenetic Map21q11.2UniSTS
Cytogenetic Map18q21.32UniSTS
Cytogenetic Map15q26.2UniSTS
Cytogenetic Map12q24.23UniSTS
Cytogenetic Map10q25.3UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map2q31.1-q31.2UniSTS
Cytogenetic MapXp22.31UniSTS
Cytogenetic MapXp21.3UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map4q28.2UniSTS
Cytogenetic Map3p14.2UniSTS
Cytogenetic Map3q24UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map20q13.2UniSTS
Cytogenetic Map14q11.2-q12UniSTS
Cytogenetic Map3p24UniSTS
Cytogenetic Map12q23.3UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map11q14.3UniSTS
Cytogenetic Map10q25.2UniSTS
Cytogenetic Map3q25.1UniSTS
Cytogenetic Map8q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map8q23.3UniSTS
Cytogenetic Map15q24UniSTS
Cytogenetic Map11cen-q12UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic MapXp21.1UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map12q21UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map7q22-q31UniSTS
Cytogenetic Map11q22UniSTS
Cytogenetic Map5p15.3UniSTS
Cytogenetic Map20q13.3-qterUniSTS
Cytogenetic Map1p35-p34UniSTS
Cytogenetic Map4p13-p12UniSTS
Cytogenetic Map10q21-q22UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map7p13-p11.1UniSTS
Cytogenetic Map9q31-q34UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic MapXp22.13UniSTS
Cytogenetic Map13q12.12UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map1pUniSTS
Cytogenetic Map16pUniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map7qUniSTS
Cytogenetic Map2qUniSTS
Cytogenetic Map5q13.1UniSTS
Cytogenetic Map11p14.1UniSTS
Cytogenetic Map4q32UniSTS
Cytogenetic Map2p22UniSTS
Cytogenetic Map5q14.3UniSTS
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map5q23.2UniSTS
Cytogenetic Map2p24.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 950 29 21 9 142 11 73 663 546 46 345 76 1 5 17 2
Low 1482 2442 1684 596 1408 436 4244 1386 3039 366 1103 1532 170 1199 2733 2
Below cutoff 513 18 17 398 17 38 144 123 6 38

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000286307   ⟹   ENSP00000286307
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5157,743,712 - 157,760,709 (+)Ensembl
RefSeq Acc Id: NM_173491   ⟹   NP_775762
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh385157,743,712 - 157,760,709 (+)NCBI
GRCh375157,170,755 - 157,183,746 (+)RGD
Build 365157,103,333 - 157,116,324 (+)NCBI Archive
Celera5153,197,357 - 153,210,338 (+)RGD
HuRef5152,259,367 - 152,272,348 (+)ENTREZGENE
CHM1_15156,603,404 - 156,620,409 (+)NCBI
T2T-CHM13v2.05158,262,719 - 158,279,702 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_775762 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH51353 (Get FASTA)   NCBI Sequence Viewer  
  AAI26450 (Get FASTA)   NCBI Sequence Viewer  
  BAC04581 (Get FASTA)   NCBI Sequence Viewer  
  EAW61589 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000286307
  ENSP00000286307.5
GenBank Protein P83369 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_775762   ⟸   NM_173491
- UniProtKB: Q7Z7P0 (UniProtKB/Swiss-Prot),   A0AVQ1 (UniProtKB/Swiss-Prot),   Q8N975 (UniProtKB/Swiss-Prot),   P83369 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000286307   ⟸   ENST00000286307
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P83369-F1-model_v2 AlphaFold P83369 1-360 view protein structure

Promoters
RGD ID:6803338
Promoter ID:HG_KWN:51653
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000252580
Position:
Human AssemblyChrPosition (strand)Source
Build 365157,103,201 - 157,103,827 (+)MPROMDB
RGD ID:6871422
Promoter ID:EPDNEW_H8876
Type:initiation region
Name:LSM11_1
Description:LSM11, U7 small nuclear RNA associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh385157,743,742 - 157,743,802EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:30860 AgrOrtholog
COSMIC LSM11 COSMIC
Ensembl Genes ENSG00000155858 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000286307 ENTREZGENE
  ENST00000286307.6 UniProtKB/Swiss-Prot
Gene3D-CATH 2.30.30.100 UniProtKB/Swiss-Prot
GTEx ENSG00000155858 GTEx
HGNC ID HGNC:30860 ENTREZGENE
Human Proteome Map LSM11 Human Proteome Map
InterPro IPR047575 UniProtKB/Swiss-Prot
  LSM-related_domain UniProtKB/Swiss-Prot
  Lsm11 UniProtKB/Swiss-Prot
  Lsm11_M UniProtKB/Swiss-Prot
  LSM_dom_euk/arc UniProtKB/Swiss-Prot
KEGG Report hsa:134353 UniProtKB/Swiss-Prot
NCBI Gene 134353 ENTREZGENE
OMIM 617910 OMIM
PANTHER PTHR21415 UniProtKB/Swiss-Prot
  U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11 UniProtKB/Swiss-Prot
PharmGKB PA134983181 PharmGKB
PROSITE PS52002 UniProtKB/Swiss-Prot
SMART SM00651 UniProtKB/Swiss-Prot
Superfamily-SCOP Sm_like_riboprot UniProtKB/Swiss-Prot
UniProt A0AVQ1 ENTREZGENE
  L0R895_HUMAN UniProtKB/TrEMBL
  LSM11_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
  Q7Z7P0 ENTREZGENE
  Q8N975 ENTREZGENE
UniProt Secondary A0AVQ1 UniProtKB/Swiss-Prot
  Q7Z7P0 UniProtKB/Swiss-Prot
  Q8N975 UniProtKB/Swiss-Prot