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ONTOLOGY REPORT - ANNOTATIONS

Term:response to cold
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Accession:GO:0009409 term browser browse the term
Definition:Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
Synonyms:related_synonym: freezing tolerance

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show annotations for term's descendants           Sort by:
response to cold term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase long chain acts_upstream_of_or_within ISO (PMID:21151927) MGI PMID:21151927 NCBI chrNW_004936845:66,674...96,248
Ensembl chrNW_004936845:66,241...96,249 		JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain acts_upstream_of_or_within ISO (PMID:16121256) MGI PMID:16121256 NCBI chrNW_004936571:2,761,254...2,797,045 JBrowse link
G Acadvl acyl-CoA dehydrogenase very long chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21151927) MGI
Ensembl		 PMID:21151927 GO_REF:0000107 NCBI chrNW_004936595:514,883...520,223
Ensembl chrNW_004936595:514,534...520,223 		JBrowse link
G Acot11 acyl-CoA thioesterase 11 involved_in ISO (PMID:11696000) BHF-UCL PMID:11696000 NCBI chrNW_004936522:6,635,675...6,681,978
Ensembl chrNW_004936522:6,633,324...6,682,059 		JBrowse link
G Adrb1 adrenoceptor beta 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12161655), (PMID:12387862) Ensembl
MGI		 PMID:12161655 PMID:12387862 GO_REF:0000107 NCBI chrNW_004936486:4,400,467...4,401,588
Ensembl chrNW_004936486:4,399,915...4,403,149 		JBrowse link
G Adrb2 adrenoceptor beta 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12161655), (PMID:12387862) Ensembl
MGI		 PMID:12161655 PMID:12387862 GO_REF:0000107 NCBI chrNW_004936504:5,985,407...5,987,453
Ensembl chrNW_004936504:5,985,960...5,987,210 		JBrowse link
G Adrb3 adrenoceptor beta 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12161655), (PMID:12387862) Ensembl
MGI		 PMID:12161655 PMID:12387862 GO_REF:0000107 NCBI chrNW_004936710:1,410,589...1,413,279
Ensembl chrNW_004936710:1,411,446...1,413,098 		JBrowse link
G Agt angiotensinogen acts_upstream_of_or_within ISO (PMID:12574102) MGI PMID:12574102 NCBI chrNW_004936484:19,713,299...19,721,144
Ensembl chrNW_004936484:19,716,165...19,721,261 		JBrowse link
G Bltp1 bridge-like lipid transfer protein family member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:36357390) MGI
Ensembl		 PMID:36357390 GO_REF:0000107 NCBI chrNW_004936662:1,329,646...1,526,610
Ensembl chrNW_004936662:1,330,446...1,526,633 		JBrowse link
G Cdh8 cadherin 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17392463) Ensembl
MGI		 PMID:17392463 GO_REF:0000107 NCBI chrNW_004936475:12,784,997...13,121,912
Ensembl chrNW_004936475:12,787,173...13,015,974 		JBrowse link
G Chrna7 cholinergic receptor nicotinic alpha 7 subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937351:32,324...46,871
Ensembl chrNW_004937351:34,921...47,246 		JBrowse link
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936835:316,767...321,999
Ensembl chrNW_004936835:316,767...321,990 		JBrowse link
G LOC101960702 lysosomal acid lipase/cholesteryl ester hydrolase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936601:4,975,296...5,008,938
Ensembl chrNW_004936601:4,975,211...5,008,962 		JBrowse link
G LOC101975245 heat shock protein HSP 90-alpha-like involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936599:2,691,546...2,694,559 JBrowse link
G LOC101976555 heat shock protein HSP 90-alpha-like involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936547:355,372...357,604 JBrowse link
G Lrp11 LDL receptor related protein 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:2,723,086...2,769,928
Ensembl chrNW_004936489:2,722,886...2,770,160 		JBrowse link
G Metrnl meteorin like, glial cell differentiation regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936923:423,618...442,261
Ensembl chrNW_004936923:423,615...442,327 		JBrowse link
G P2rx3 purinergic receptor P2X 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15927378) Ensembl
MGI		 PMID:15927378 GO_REF:0000107 NCBI chrNW_004936581:5,116,276...5,146,378
Ensembl chrNW_004936581:5,115,492...5,146,634 		JBrowse link
G Pcsk1n proprotein convertase subtilisin/kexin type 1 inhibitor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16631141) Ensembl
MGI		 PMID:16631141 GO_REF:0000107 NCBI chrNW_004936721:783,973...787,712
Ensembl chrNW_004936721:782,032...787,952 		JBrowse link
G Plac8 placenta associated 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21982742) Ensembl
MGI		 PMID:21982742 GO_REF:0000107 NCBI chrNW_004936738:1,484,905...1,503,181
Ensembl chrNW_004936738:1,484,859...1,503,302 		JBrowse link
G Rbm3 RNA binding motif protein 3 acts_upstream_of_or_within ISO (PMID:15684048) MGI PMID:15684048 NCBI chrNW_004936721:547,751...551,273
Ensembl chrNW_004936721:547,777...551,270 		JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:28,162,528...28,248,474
Ensembl chrNW_004936473:28,162,528...28,248,474 		JBrowse link
G Slc27a1 solute carrier family 27 member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17130465) Ensembl
MGI		 PMID:17130465 GO_REF:0000107 NCBI chrNW_004936596:3,426,807...3,451,259
Ensembl chrNW_004936596:3,427,874...3,449,489 		JBrowse link
G Thra thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12869545) Ensembl
MGI		 PMID:12869545 GO_REF:0000107 NCBI chrNW_004936490:15,188,341...15,206,032
Ensembl chrNW_004936490:15,193,150...15,206,784 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21151927) MGI
Ensembl		 PMID:21151927 GO_REF:0000107 NCBI chrNW_004936736:1,986,361...2,113,455
Ensembl chrNW_004936736:1,978,110...2,113,451 		JBrowse link
G Trpa1 transient receptor potential cation channel subfamily A member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16630838)
(PMID:12654248)		 MGI
Ensembl		 PMID:12654248 PMID:16630838 GO_REF:0000107 NCBI chrNW_004936648:1,094,460...1,141,394
Ensembl chrNW_004936648:1,094,460...1,141,394 		JBrowse link
G Trpm8 transient receptor potential cation channel subfamily M member 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17538622)
(PMID:17481391)
(PMID:12654248), (PMID:17015441)
(PMID:17481392)		 Ensembl
MGI		 PMID:12654248 PMID:17015441 PMID:17481391 PMID:17481392 PMID:17538622 GO_REF:0000107 NCBI chrNW_004936525:3,413,730...3,491,815
Ensembl chrNW_004936525:3,413,747...3,491,815 		JBrowse link
G Vgf VGF nerve growth factor inducible involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16631141) Ensembl
MGI		 PMID:16631141 GO_REF:0000107 NCBI chrNW_004936543:1,059,292...1,062,384
Ensembl chrNW_004936543:1,059,799...1,061,646 		JBrowse link
G Znf516 zinc finger protein 516 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936616:2,451,952...2,553,843
Ensembl chrNW_004936616:2,452,248...2,553,693 		JBrowse link
cellular response to cold term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cidea cell death inducing DFFA like effector a involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936626:230,372...246,893
Ensembl chrNW_004936626:230,329...246,893 		JBrowse link
G Cirbp cold inducible RNA binding protein acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:9151692) MGI
Ensembl		 PMID:9151692 GO_REF:0000107 NCBI chrNW_004936588:636,041...639,564
Ensembl chrNW_004936588:636,026...640,409 		JBrowse link
G Dnajc3 DnaJ heat shock protein family (Hsp40) member C3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:14,055,548...14,126,173
Ensembl chrNW_004936472:14,055,532...14,126,211 		JBrowse link
G Eif2ak3 eukaryotic translation initiation factor 2 alpha kinase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936712:413,602...454,443
Ensembl chrNW_004936712:414,446...454,449 		JBrowse link
G Eif2ak4 eukaryotic translation initiation factor 2 alpha kinase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:3,423,792...3,527,089
Ensembl chrNW_004936471:3,423,813...3,526,913 		JBrowse link
G Foxo1 forkhead box O1 involved_in ISS (PMID:22510882) UniProt PMID:22510882 NCBI chrNW_004936565:5,210,014...5,299,213
Ensembl chrNW_004936565:5,210,014...5,302,436 		JBrowse link
G Lipe lipase E, hormone sensitive type acts_upstream_of_or_within ISO (PMID:30862682) MGI PMID:30862682 NCBI chrNW_004936706:122,939...139,506
Ensembl chrNW_004936706:128,133...141,276 		JBrowse link
G Nfe2l1 NFE2 like bZIP transcription factor 1 acts_upstream_of_or_within ISO (PMID:29400713) MGI PMID:29400713 NCBI chrNW_004936490:13,265,269...13,279,164
Ensembl chrNW_004936490:13,266,347...13,279,206 		JBrowse link
G Plin1 perilipin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:30862682) Ensembl
MGI		 PMID:30862682 GO_REF:0000107 NCBI chrNW_004936483:15,457,299...15,470,674
Ensembl chrNW_004936483:15,457,297...15,470,350 		JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:30862682) MGI
Ensembl		 PMID:30862682 GO_REF:0000107 NCBI chrNW_004936659:2,750,015...2,765,914
Ensembl chrNW_004936659:2,750,537...2,765,753 		JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936608:1,353,905...1,464,636
Ensembl chrNW_004936608:1,353,897...1,464,636 		JBrowse link
G Rnf34 ring finger protein 34 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:2,901,386...2,918,976
Ensembl chrNW_004936558:2,901,512...2,919,018 		JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 involved_in ISO (PMID:25673876) UniProt PMID:25673876 NCBI chrNW_004936652:885,616...915,113 JBrowse link
G Scn11a sodium voltage-gated channel alpha subunit 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:28,162,528...28,248,474
Ensembl chrNW_004936473:28,162,528...28,248,474 		JBrowse link
G Slc9a1 solute carrier family 9 member A1 ISO RGD PMID:15452191 RGD:1625557 NCBI chrNW_004936474:11,460,266...11,517,420
Ensembl chrNW_004936474:11,459,929...11,517,478 		JBrowse link
G Trpa1 transient receptor potential cation channel subfamily A member 1 ISO RGD PMID:21068322 RGD:10043615 NCBI chrNW_004936648:1,094,460...1,141,394
Ensembl chrNW_004936648:1,094,460...1,141,394 		JBrowse link
G Ucp1 uncoupling protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:7,258,146...7,265,475
Ensembl chrNW_004936535:7,258,343...7,265,398 		JBrowse link
G Vwf von Willebrand factor ISO RGD PMID:12084999 RGD:11079231 NCBI chrNW_004936709:1,578,137...1,741,877
Ensembl chrNW_004936709:1,579,096...1,741,754 		JBrowse link
cellular response to freezing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abraxas2 abraxas 2, BRISC complex subunit acts_upstream_of_or_within ISO (PMID:22974638) MGI PMID:22974638 NCBI chrNW_004936486:13,038,177...13,064,802
Ensembl chrNW_004936486:13,038,188...13,064,898 		JBrowse link
cold acclimation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Appl2 adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:9,477,483...9,526,692
Ensembl chrNW_004936492:9,477,373...9,526,692 		JBrowse link
G Atp5f1b ATP synthase F1 subunit beta ISO RGD PMID:9163327 RGD:13799276 NCBI chrNW_004936646:951,236...958,907
Ensembl chrNW_004936646:951,009...959,516 		JBrowse link
G Atp5mc1 ATP synthase membrane subunit c locus 1 ISO RGD PMID:9163327 RGD:13799276 NCBI chrNW_004936490:12,549,045...12,551,895
Ensembl chrNW_004936490:12,548,813...12,552,278 		JBrowse link
G Mb myoglobin ISO RGD PMID:3784148 RGD:490007147 NCBI chrNW_004936492:4,890,871...4,897,665
Ensembl chrNW_004936492:4,890,871...4,897,665 		JBrowse link
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ISO RGD PMID:21945600 RGD:6484546 NCBI chrNW_004936518:1,817,051...1,843,376
Ensembl chrNW_004936518:1,804,969...1,843,380 		JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 involved_in ISO (PMID:25673876) UniProt PMID:25673876 NCBI chrNW_004936652:885,616...915,113 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17413
    response to stimulus 8600
      response to stress 3724
        response to cold 51
          cellular response to cold + 19
          cold acclimation 6
          response to freezing + 1
          vernalization response + 0
Path 2
Term Annotations click to browse term
  biological_process 17413
    response to stimulus 8600
      response to abiotic stimulus 1457
        response to temperature stimulus 187
          response to cold 51
            cellular response to cold + 19
            cold acclimation 6
            response to freezing + 1
            vernalization response + 0
paths to the root