Rnf34 (ring finger protein 34) - Rat Genome Database

Name: Rnf34
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Rnf34 (ring finger protein 34) Ictidomys tridecemlineatus

Analyze

Symbol:

Rnf34

Name:

ring finger protein 34

RGD ID:

12464198

Description:

ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN apoptotic process (inferred); cellular response to cold (inferred); negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (inferred); ASSOCIATED WITH Colonic Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); endomembrane system (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

E3 ubiquitin-protein ligase RNF34; ring finger protein 34, transcript variant X1; ring finger protein 34, transcript variant X2; ring finger protein 34, transcript variant X3; ring finger protein 34, transcript variant X4

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF34 (ring finger protein 34)	NCBI	Ortholog
Mus musculus (house mouse):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf34 (ring finger protein 34)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	156,560,433 - 156,577,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	2,901,512 - 2,919,018 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	2,901,386 - 2,918,976 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Colonic Neoplasms (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

apoptotic process (IEA)

cellular response to cold (IEA)

negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (IEA)

negative regulation of signal transduction by p53 class mediator (IEA)

nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway (IEA)

proteasome-mediated ubiquitin-dependent protein catabolic process (IEA)

protein K48-linked ubiquitination (IEA)

protein ubiquitination (IEA)

regulation of oxygen metabolic process (IEA)

ubiquitin-dependent protein catabolic process (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

endomembrane system (IEA)

membrane (IEA)

nuclear body (IEA)

nuclear speck (IEA)

nucleoplasm (IEA)

nucleus (IEA)

plasma membrane (IEA)

Molecular Function

metal ion binding (IEA)

p53 binding (IEA)

phosphatidylinositol phosphate binding (IEA)

protein binding (ISO)

ubiquitin protein ligase activity (IEA)

ubiquitin protein ligase binding (IEA)

ubiquitin-protein transferase activity (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Rnf34
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	156,560,433 - 156,577,926 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	2,901,512 - 2,919,018 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	2,901,386 - 2,918,976 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF34
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	121,400,118 - 121,424,348 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	121,400,083 - 121,430,623 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	121,837,921 - 121,862,151 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	120,322,285 - 120,346,538 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	120,300,621 - 120,324,875	NCBI
Celera	12	121,475,573 - 121,499,826 (+)	NCBI		Celera
Cytogenetic Map	12	q24.31	NCBI
HuRef	12	118,847,675 - 118,871,945 (+)	NCBI		HuRef
CHM1_1	12	121,806,339 - 121,830,742 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	121,366,860 - 121,415,781 (+)	NCBI		T2T-CHM13v2.0

Rnf34
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	122,988,270 - 123,007,008 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	122,988,111 - 123,009,354 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	122,850,112 - 122,868,945 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	122,850,048 - 122,871,291 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	123,300,197 - 123,318,954 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	123,110,805 - 123,129,562 (+)	NCBI		MGSCv36	mm8
Celera	5	119,936,301 - 119,955,549 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	62.62	NCBI

Rnf34
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	39,364,461 - 39,385,391 (-)	NCBI		GRCr8
mRatBN7.2	12	33,703,655 - 33,724,606 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	33,703,673 - 33,724,586 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	34,882,808 - 34,902,193 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	35,494,172 - 35,513,557 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	34,545,596 - 34,566,473 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	39,164,290 - 39,185,209 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	39,164,290 - 39,185,168 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	41,057,289 - 41,078,204 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	34,805,137 - 34,826,016 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	34,668,524 - 34,689,404 (-)	NCBI
Celera	12	35,382,479 - 35,403,370 (-)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Rnf34
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	6,891,546 - 6,905,139 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	6,889,112 - 6,905,139 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNF34
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	129,466,369 - 129,509,485 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	129,462,743 - 129,505,859 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	118,998,436 - 119,022,823 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	122,373,125 - 122,396,579 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	122,373,172 - 122,402,693 (+)	Ensembl	panpan1.1		panPan2

RNF34
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	7,746,460 - 7,767,967 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	7,744,924 - 7,767,892 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	7,905,034 - 7,932,810 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	7,997,181 - 8,024,945 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	8,001,662 - 8,024,896 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	7,928,632 - 7,956,393 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	8,015,897 - 8,043,664 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	7,971,921 - 7,999,702 (-)	NCBI		UU_Cfam_GSD_1.0

RNF34
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	31,206,674 - 31,229,484 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	31,202,030 - 31,229,529 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

RNF34
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	116,777,294 - 116,800,816 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	116,777,419 - 116,800,035 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	128,233,321 - 128,257,267 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf34
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	21,904,667 - 21,920,778 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	21,904,652 - 21,920,579 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005329598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013360416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000009890 ⟹ ENSSTOP00000008869

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936558	2,902,231 - 2,919,018 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000036447 ⟹ ENSSTOP00000026529

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936558	2,901,512 - 2,918,946 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000040975 ⟹ ENSSTOP00000027487

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936558	2,901,512 - 2,919,018 (-)	Ensembl

RefSeq Acc Id:

XM_005329598 ⟹ XP_005329655

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	156,560,433 - 156,577,195 (+)	NCBI
SpeTri2.0	NW_004936558	2,901,386 - 2,918,976 (-)	NCBI

Sequence:

show sequence

AGGTCGCCTCGGGAGGCGGCGTAATCACCGCCTAGGAGGAAGGAGGTCGGCTGTTCCAGGAGCT
GCTATGGTGTTGAGTTCCCCGGTATCGCCGACCGAGCCAAGGCGTTCGCTGCCATGAAGGCGGG
TGCCACATCTATGTGGGCTTCGTGCTGTGGGCTGCTGAATGAAGTCATGGGAACCGGAGCTGTC
AGGGGCCAGCAGTCAGGATTTGCAGGAGGCACTGGTCCTTTCAGATTTACACCAAACTCTGATT
TTTCCACCTACCCACCAGCAACTCCTGAAGGGCCTAATATAGTTTGCAAAGCCTGTGGACTTTC
ATTTTCAGTCTTTAGAAAGAAGCATGTGTGTTGTGACTGCAAGAAGGATTTTTGCTCCGTTTGT
TCAGTCCCGCAAGAAAATCACCGTAGATGTTCTACTTGTCACTTATTACAAGAGACTGCCTTCC
AGCGCCCTCAGTTGATGCGACTAAAAGTGAAGGATCTTCGGCAGTATCTCATTCTTAGAAACAT
ACCAATAGATACTTGTCGAGAGAAGGAAGACTTGGTAGATCTAGTACTGTGCCACCATGGACTA
GGCTCTGAGGATGACCTGGACACAAGCAGTCTGAATTCTTCACAGTCCCAGACTTCTAGCTTTT
TTACAGAGTCATTTTTTTCAAACTACACCGCCCCCTCTGCTACCGTGTCTTCCTTTCAGGGGGA
GCTTATGGATGGAGATGGCACCTCGAGATCTGGAGCACTGGCACAGGTACAAAGTGAAATAGCT
TCAGCAAACACAGAAGACGATGATGATGATGATGACGATGATGAGGATGAAGAAGAAGAAGAAG
AAGAAGAAGAAAATTTACAGGATCGGACCCTTGGGCTCTCCAAGAAGCGAGTGAGAGCTTCGCT
GTCTGACCTGACAAGCCTTGAAGAGGTGGAGGGGATGAGTGTGCGCCAGCTGAAGGAAATCCTG
GCTCGGAATTTTGTCAACTATTCTGGCTGTTGTGAAAAATGGGAACTGGTAGAGAAAGTTAACC
GGTTATACAAAGAGAATGAAGAAAACCAAAAGTCATATGGTGAGCGGCTGCAGCTGCAGGACGA
GGAAGACGACAGTCTGTGCCGCATCTGCATGGATGCTGTCATCGATTGTGTCCTACTGGAATGT
GGGCACATGGTCACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCCGCCAGT
ACGTGGTGCGAGCTGTGCACGTGTTCAAGTCCTGAAACCAAGGTTCTCCCCAGTGGGACACGCA
CCCCCAGACTCTATCCCAAACATTTCAGTGCACAGAAGGGACTGGAAACTTACTGTTCAAAGGC
AGAAGCTATTTTTAAAAATTATTTTCACTACTTATTGGGGGCATAAAGTTTCATCCTAAGATGA
AGAAACATTGGTCCGCGCCATGAGCCTGCCTACGATCACGAGCTTCCTAGGTTTTACGGGGTTC
TGTCACTTGTCCCTCGTGAGCGCTAGTTGTTGAAGTCAGACTTTTGGGCATCAGCTCCTGCTCT
CTGGCCAGTACTTACCCCATTCTTGTTTCCCTTTGATCCTATGTTGGAAACTTCTGTTCTCTTT
GGGTGAGGTGAGCTCACTGTCCACAGTGGCTCATGTGGAACATGCTAAGCAGCGGCCCCTTTGA
ATGTTCAGTTTATTAGTCATGTATATTTTAAATGCTAATATTTGATGAATGTAAGTTTCCACAT
TATTGCCATTTCTGGGTTTAAACATAATTGGGAACAACTGACAGGGCCTTAGATGAAACATGTC
CATTTTTGTTTAGGTGCAGCTTTTTATGCTGTGCCTAGCTTCTTACATTAGGAGTGTGTGTGCT
TGATTTTTTGTTAATGTGTAATCAGTTTACACTGTTTTGTATAGTGAAGGTGTATTTTTAGTGC
TACCTGCTAGCTAATTTCAACTTTAGGAATAAAATTAGATTTAAAGGAAATGTTTTTGTTTACA
TCGTCTCAAGTCGGTTCCTGATTCATTTGCATACAGCCTGAATGGTATCTGTAACCTGGTCTAG
CATCCTCTTCAGAATAAATGAGAGCACCTTCAAAGATGTCATAACAAA

hide sequence

RefSeq Acc Id:

XM_013360414 ⟹ XP_013215868

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	156,560,436 - 156,577,926 (+)	NCBI
SpeTri2.0	NW_004936558	2,901,386 - 2,918,976 (-)	NCBI

Sequence:

show sequence

AGGTCGCCTCGGGAGGCGGCGTAATCACCGCCTAGGAGGAAGGAGGTCGGCTGTTCCAGGAGCT
GCTATGGTGTTGAGTTCCCCGGTATCGCCGACCGAGCCAAGGCGTTCGCTGCCATGAAGATTTC
TGGGAAAGACCAGTGACTCCTGATGTCATGGAATGGTAACATGAATATTCATGCGGGTGCCACA
TCTATGTGGGCTTCGTGCTGTGGGCTGCTGAATGAAGTCATGGGAACCGGAGCTGTCAGGGGCC
AGCAGTCAGGATTTGCAGGAGGCACTGGTCCTTTCAGATTTACACCAAACTCTGATTTTTCCAC
CTACCCACCAGCAACTCCTGAAGGGCCTAATATAGTTTGCAAAGCCTGTGGACTTTCATTTTCA
GTCTTTAGAAAGAAGCATGTGTGTTGTGACTGCAAGAAGGATTTTTGCTCCGTTTGTTCAGTCC
CGCAAGAAAATCACCGTAGATGTTCTACTTGTCACTTATTACAAGAGACTGCCTTCCAGCGCCC
TCAGTTGATGCGACTAAAAGTGAAGGATCTTCGGCAGTATCTCATTCTTAGAAACATACCAATA
GATACTTGTCGAGAGAAGGAAGACTTGGTAGATCTAGTACTGTGCCACCATGGACTAGGCTCTG
AGGATGACCTGGACACAAGCAGTCTGAATTCTTCACAGTCCCAGACTTCTAGCTTTTTTACAGA
GTCATTTTTTTCAAACTACACCGCCCCCTCTGCTACCGTGTCTTCCTTTCAGGGGGAGCTTATG
GATGGAGATGGCACCTCGAGATCTGGAGCACTGGCACAGGTACAAAGTGAAATAGCTTCAGCAA
ACACAGAAGACGATGATGATGATGATGACGATGATGAGGATGAAGAAGAAGAAGAAGAAGAAGA
AGAAAATTTACAGGATCGGACCCTTGGGCTCTCCAAGAAGCGAGTGAGAGCTTCGCTGTCTGAC
CTGACAAGCCTTGAAGAGGTGGAGGGGATGAGTGTGCGCCAGCTGAAGGAAATCCTGGCTCGGA
ATTTTGTCAACTATTCTGGCTGTTGTGAAAAATGGGAACTGGTAGAGAAAGTTAACCGGTTATA
CAAAGAGAATGAAGAAAACCAAAAGTCATATGGTGAGCGGCTGCAGCTGCAGGACGAGGAAGAC
GACAGTCTGTGCCGCATCTGCATGGATGCTGTCATCGATTGTGTCCTACTGGAATGTGGGCACA
TGGTCACCTGCACCAAGTGCGGCAAGCGCATGAGTGAGTGTCCCATCTGCCGCCAGTACGTGGT
GCGAGCTGTGCACGTGTTCAAGTCCTGAAACCAAGGTTCTCCCCAGTGGGACACGCACCCCCAG
ACTCTATCCCAAACATTTCAGTGCACAGAAGGGACTGGAAACTTACTGTTCAAAGGCAGAAGCT
ATTTTTAAAAATTATTTTCACTACTTATTGGGGGCATAAAGTTTCATCCTAAGATGAAGAAACA
TTGGTCCGCGCCATGAGCCTGCCTACGATCACGAGCTTCCTAGGTTTTACGGGGTTCTGTCACT
TGTCCCTCGTGAGCGCTAGTTGTTGAAGTCAGACTTTTGGGCATCAGCTCCTGCTCTCTGGCCA
GTACTTACCCCATTCTTGTTTCCCTTTGATCCTATGTTGGAAACTTCTGTTCTCTTTGGGTGAG
GTGAGCTCACTGTCCACAGTGGCTCATGTGGAACATGCTAAGCAGCGGCCCCTTTGAATGTTCA
GTTTATTAGTCATGTATATTTTAAATGCTAATATTTGATGAATGTAAGTTTCCACATTATTGCC
ATTTCTGGGTTTAAACATAATTGGGAACAACTGACAGGGCCTTAGATGAAACATGTCCATTTTT
GTTTAGGTGCAGCTTTTTATGCTGTGCCTAGCTTCTTACATTAGGAGTGTGTGTGCTTGATTTT
TTGTTAATGTGTAATCAGTTTACACTGTTTTGTATAGTGAAGGTGTATTTTTAGTGCTACCTGC
TAGCTAATTTCAACTTTAGGAATAAAATTAGATTTAAAGGAAATGTTTTTGTTTACATCGTCTC
AAGTCGGTTCCTGATTCATTTGCATACAGCCTGAATGGTATCTGTAACCTGGTCTAGCATCCTC
TTCAGAATAAATGAGAGCACCTTCAAAGATGTCATAACAAA

hide sequence

RefSeq Acc Id:

XM_013360415 ⟹ XP_013215869

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	156,560,436 - 156,577,926 (+)	NCBI
SpeTri2.0	NW_004936558	2,901,386 - 2,918,975 (-)	NCBI

Sequence:

show sequence

GGTCGCCTCGGGAGGCGGCGTAATCACCGCCTAGGAGGAAGGAGGTCGGCTGTTCCAGGAGCTG
CTATGGTGTTGAGTTCCCCGGTATCGCCGACCGAGCCAAGGCGTTCGCTGCCATGAAGATTTCT
GGGAAAGACCAGTGACTCCTGATGTCATGGAATGGTAACATGAATATTCATCATGTGTGTTGTG
ACTGCAAGAAGGATTTTTGCTCCGTTTGTTCAGTCCCGCAAGAAAATCACCGTAGATGTTCTAC
TTGTCACTTATTACAAGAGACTGCCTTCCAGCGCCCTCAGTTGATGCGACTAAAAGTGAAGGAT
CTTCGGCAGTATCTCATTCTTAGAAACATACCAATAGATACTTGTCGAGAGAAGGAAGACTTGG
TAGATCTAGTACTGTGCCACCATGGACTAGGCTCTGAGGATGACCTGGACACAAGCAGTCTGAA
TTCTTCACAGTCCCAGACTTCTAGCTTTTTTACAGAGTCATTTTTTTCAAACTACACCGCCCCC
TCTGCTACCGTGTCTTCCTTTCAGGGGGAGCTTATGGATGGAGATGGCACCTCGAGATCTGGAG
CACTGGCACAGGTACAAAGTGAAATAGCTTCAGCAAACACAGAAGACGATGATGATGATGATGA
CGATGATGAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAAATTTACAGGATCGGACCCTTGGG
CTCTCCAAGAAGCGAGTGAGAGCTTCGCTGTCTGACCTGACAAGCCTTGAAGAGGTGGAGGGGA
TGAGTGTGCGCCAGCTGAAGGAAATCCTGGCTCGGAATTTTGTCAACTATTCTGGCTGTTGTGA
AAAATGGGAACTGGTAGAGAAAGTTAACCGGTTATACAAAGAGAATGAAGAAAACCAAAAGTCA
TATGGTGAGCGGCTGCAGCTGCAGGACGAGGAAGACGACAGTCTGTGCCGCATCTGCATGGATG
CTGTCATCGATTGTGTCCTACTGGAATGTGGGCACATGGTCACCTGCACCAAGTGCGGCAAGCG
CATGAGTGAGTGTCCCATCTGCCGCCAGTACGTGGTGCGAGCTGTGCACGTGTTCAAGTCCTGA
AACCAAGGTTCTCCCCAGTGGGACACGCACCCCCAGACTCTATCCCAAACATTTCAGTGCACAG
AAGGGACTGGAAACTTACTGTTCAAAGGCAGAAGCTATTTTTAAAAATTATTTTCACTACTTAT
TGGGGGCATAAAGTTTCATCCTAAGATGAAGAAACATTGGTCCGCGCCATGAGCCTGCCTACGA
TCACGAGCTTCCTAGGTTTTACGGGGTTCTGTCACTTGTCCCTCGTGAGCGCTAGTTGTTGAAG
TCAGACTTTTGGGCATCAGCTCCTGCTCTCTGGCCAGTACTTACCCCATTCTTGTTTCCCTTTG
ATCCTATGTTGGAAACTTCTGTTCTCTTTGGGTGAGGTGAGCTCACTGTCCACAGTGGCTCATG
TGGAACATGCTAAGCAGCGGCCCCTTTGAATGTTCAGTTTATTAGTCATGTATATTTTAAATGC
TAATATTTGATGAATGTAAGTTTCCACATTATTGCCATTTCTGGGTTTAAACATAATTGGGAAC
AACTGACAGGGCCTTAGATGAAACATGTCCATTTTTGTTTAGGTGCAGCTTTTTATGCTGTGCC
TAGCTTCTTACATTAGGAGTGTGTGTGCTTGATTTTTTGTTAATGTGTAATCAGTTTACACTGT
TTTGTATAGTGAAGGTGTATTTTTAGTGCTACCTGCTAGCTAATTTCAACTTTAGGAATAAAAT
TAGATTTAAAGGAAATGTTTTTGTTTACATCGTCTCAAGTCGGTTCCTGATTCATTTGCATACA
GCCTGAATGGTATCTGTAACCTGGTCTAGCATCCTCTTCAGAATAAATGAGAGCACCTTCAAAG
ATGTCATAACAAA

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RefSeq Acc Id:

XM_013360416 ⟹ XP_013215870

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405118	156,560,447 - 156,577,926 (+)	NCBI
SpeTri2.0	NW_004936558	2,901,386 - 2,918,975 (-)	NCBI

Sequence:

show sequence

GGTCGCCTCGGGAGGCGGCGTAATCACCGCCTAGGAGGAAGGAGGTCGGCTGTTCCAGGAGCTG
CTATGGTGTTGAGTTCCCCGGTATCGCCGACCGAGCCAAGGCGTTCGCTGCCATGAAGCATGTG
TGTTGTGACTGCAAGAAGGATTTTTGCTCCGTTTGTTCAGTCCCGCAAGAAAATCACCGTAGAT
GTTCTACTTGTCACTTATTACAAGAGACTGCCTTCCAGCGCCCTCAGTTGATGCGACTAAAAGT
GAAGGATCTTCGGCAGTATCTCATTCTTAGAAACATACCAATAGATACTTGTCGAGAGAAGGAA
GACTTGGTAGATCTAGTACTGTGCCACCATGGACTAGGCTCTGAGGATGACCTGGACACAAGCA
GTCTGAATTCTTCACAGTCCCAGACTTCTAGCTTTTTTACAGAGTCATTTTTTTCAAACTACAC
CGCCCCCTCTGCTACCGTGTCTTCCTTTCAGGGGGAGCTTATGGATGGAGATGGCACCTCGAGA
TCTGGAGCACTGGCACAGGTACAAAGTGAAATAGCTTCAGCAAACACAGAAGACGATGATGATG
ATGATGACGATGATGAGGATGAAGAAGAAGAAGAAGAAGAAGAAGAAAATTTACAGGATCGGAC
CCTTGGGCTCTCCAAGAAGCGAGTGAGAGCTTCGCTGTCTGACCTGACAAGCCTTGAAGAGGTG
GAGGGGATGAGTGTGCGCCAGCTGAAGGAAATCCTGGCTCGGAATTTTGTCAACTATTCTGGCT
GTTGTGAAAAATGGGAACTGGTAGAGAAAGTTAACCGGTTATACAAAGAGAATGAAGAAAACCA
AAAGTCATATGGTGAGCGGCTGCAGCTGCAGGACGAGGAAGACGACAGTCTGTGCCGCATCTGC
ATGGATGCTGTCATCGATTGTGTCCTACTGGAATGTGGGCACATGGTCACCTGCACCAAGTGCG
GCAAGCGCATGAGTGAGTGTCCCATCTGCCGCCAGTACGTGGTGCGAGCTGTGCACGTGTTCAA
GTCCTGAAACCAAGGTTCTCCCCAGTGGGACACGCACCCCCAGACTCTATCCCAAACATTTCAG
TGCACAGAAGGGACTGGAAACTTACTGTTCAAAGGCAGAAGCTATTTTTAAAAATTATTTTCAC
TACTTATTGGGGGCATAAAGTTTCATCCTAAGATGAAGAAACATTGGTCCGCGCCATGAGCCTG
CCTACGATCACGAGCTTCCTAGGTTTTACGGGGTTCTGTCACTTGTCCCTCGTGAGCGCTAGTT
GTTGAAGTCAGACTTTTGGGCATCAGCTCCTGCTCTCTGGCCAGTACTTACCCCATTCTTGTTT
CCCTTTGATCCTATGTTGGAAACTTCTGTTCTCTTTGGGTGAGGTGAGCTCACTGTCCACAGTG
GCTCATGTGGAACATGCTAAGCAGCGGCCCCTTTGAATGTTCAGTTTATTAGTCATGTATATTT
TAAATGCTAATATTTGATGAATGTAAGTTTCCACATTATTGCCATTTCTGGGTTTAAACATAAT
TGGGAACAACTGACAGGGCCTTAGATGAAACATGTCCATTTTTGTTTAGGTGCAGCTTTTTATG
CTGTGCCTAGCTTCTTACATTAGGAGTGTGTGTGCTTGATTTTTTGTTAATGTGTAATCAGTTT
ACACTGTTTTGTATAGTGAAGGTGTATTTTTAGTGCTACCTGCTAGCTAATTTCAACTTTAGGA
ATAAAATTAGATTTAAAGGAAATGTTTTTGTTTACATCGTCTCAAGTCGGTTCCTGATTCATTT
GCATACAGCCTGAATGGTATCTGTAACCTGGTCTAGCATCCTCTTCAGAATAAATGAGAGCACC
TTCAAAGATGTCATAACAAA

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Protein Sequences


Protein RefSeqs	XP_005329655	(Get FASTA)	NCBI Sequence Viewer
	XP_013215868	(Get FASTA)	NCBI Sequence Viewer
	XP_013215869	(Get FASTA)	NCBI Sequence Viewer
	XP_013215870	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008869.3
	ENSSTOP00000026529.1
	ENSSTOP00000027487.1
GenBank Protein	KAG3279058	(Get FASTA)	NCBI Sequence Viewer
	KAG3279059	(Get FASTA)	NCBI Sequence Viewer
	KAG3279060	(Get FASTA)	NCBI Sequence Viewer
	KAG3279061	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_013215869 ⟸ XM_013360415

- Peptide Label:

isoform X3

- Sequence:

show sequence

MSWNGNMNIHHVCCDCKKDFCSVCSVPQENHRRCSTCHLLQETAFQRPQLMRLKVKDLRQYLIL
RNIPIDTCREKEDLVDLVLCHHGLGSEDDLDTSSLNSSQSQTSSFFTESFFSNYTAPSATVSSF
QGELMDGDGTSRSGALAQVQSEIASANTEDDDDDDDDDEDEEEEEEEEENLQDRTLGLSKKRVR
ASLSDLTSLEEVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYGERLQL
QDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS

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RefSeq Acc Id:

XP_013215870 ⟸ XM_013360416

- Peptide Label:

isoform X4

- Sequence:

show sequence

MKHVCCDCKKDFCSVCSVPQENHRRCSTCHLLQETAFQRPQLMRLKVKDLRQYLILRNIPIDTC
REKEDLVDLVLCHHGLGSEDDLDTSSLNSSQSQTSSFFTESFFSNYTAPSATVSSFQGELMDGD
GTSRSGALAQVQSEIASANTEDDDDDDDDDEDEEEEEEEEENLQDRTLGLSKKRVRASLSDLTS
LEEVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYGERLQLQDEEDDSL
CRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS

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RefSeq Acc Id:	XP_005329655 ⟸ XM_005329598
- Peptide Label:	isoform X2
- UniProtKB:	A0A287D1U0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKAGATSMWASCCGLLNEVMGTGAVRGQQSGFAGGTGPFRFTPNSDFSTYPPATPEGPNIVCKA CGLSFSVFRKKHVCCDCKKDFCSVCSVPQENHRRCSTCHLLQETAFQRPQLMRLKVKDLRQYLI LRNIPIDTCREKEDLVDLVLCHHGLGSEDDLDTSSLNSSQSQTSSFFTESFFSNYTAPSATVSS FQGELMDGDGTSRSGALAQVQSEIASANTEDDDDDDDDDEDEEEEEEEEENLQDRTLGLSKKRV RASLSDLTSLEEVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYKENEENQKSYGERLQ LQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFKS hide sequence

RefSeq Acc Id:	XP_013215868 ⟸ XM_013360414
- Peptide Label:	isoform X1
- UniProtKB:	I3MEF4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSWNGNMNIHAGATSMWASCCGLLNEVMGTGAVRGQQSGFAGGTGPFRFTPNSDFSTYPPATPE GPNIVCKACGLSFSVFRKKHVCCDCKKDFCSVCSVPQENHRRCSTCHLLQETAFQRPQLMRLKV KDLRQYLILRNIPIDTCREKEDLVDLVLCHHGLGSEDDLDTSSLNSSQSQTSSFFTESFFSNYT APSATVSSFQGELMDGDGTSRSGALAQVQSEIASANTEDDDDDDDDDEDEEEEEEEEENLQDRT LGLSKKRVRASLSDLTSLEEVEGMSVRQLKEILARNFVNYSGCCEKWELVEKVNRLYKENEENQ KSYGERLQLQDEEDDSLCRICMDAVIDCVLLECGHMVTCTKCGKRMSECPICRQYVVRAVHVFK S hide sequence

RefSeq Acc Id:

ENSSTOP00000026529 ⟸ ENSSTOT00000036447

RefSeq Acc Id:

ENSSTOP00000008869 ⟸ ENSSTOT00000009890

RefSeq Acc Id:

ENSSTOP00000027487 ⟸ ENSSTOT00000040975

Protein Domains

RING-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000009887	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000009890.3	UniProtKB/TrEMBL
	ENSSTOT00000036447.1	UniProtKB/TrEMBL
	ENSSTOT00000040975.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.720.140	UniProtKB/TrEMBL
	1.10.720.30	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
InterPro	CARP1_2_FYVE	UniProtKB/TrEMBL
	CARP1_FYVE	UniProtKB/TrEMBL
	SAP_dom_sf	UniProtKB/TrEMBL
	Znf_FYVE_PHD	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
NCBI Gene	Rnf34	ENTREZGENE
PANTHER	CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING	UniProtKB/TrEMBL
	E3 UBIQUITIN-PROTEIN LIGASE RNF34	UniProtKB/TrEMBL
Pfam	FYVE_CARP1-2	UniProtKB/TrEMBL
	zf-C3HC4_3	UniProtKB/TrEMBL
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF57903	UniProtKB/TrEMBL
	SSF68906	UniProtKB/TrEMBL
UniProt	A0A287CZ47_ICTTR	UniProtKB/TrEMBL
	A0A287D1U0	ENTREZGENE, UniProtKB/TrEMBL
	I3MEF4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD