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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleosome assembly
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Accession:GO:0006334 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
Synonyms:exact_synonym: nucleosome modeling
 related_synonym: histone chaperone

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nucleosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Anp32b acidic nuclear phosphoprotein 32 family member B involved_in ISO (PMID:20538007) UniProt PMID:20538007 NCBI chrNW_004624825:2,814,758...2,844,008 JBrowse link
G Asf1a anti-silencing function 1A histone chaperone acts_upstream_of_or_within
involved_in		 ISO (PMID:11897662)
(PMID:14718166)		 MGI
GO_Central		 PMID:11897662 PMID:14718166 NCBI chrNW_004624798:11,306,849...11,317,075 JBrowse link
G Asf1b anti-silencing function 1B histone chaperone involved_in
acts_upstream_of_or_within		 ISO (PMID:14718166)
(PMID:12842904)		 GO_Central
MGI		 PMID:12842904 PMID:14718166 NCBI chrNW_004624901:1,342,855...1,354,196
Ensembl chrNW_004624901:1,342,765...1,354,165 		JBrowse link
G Baz1a bromodomain adjacent to zinc finger domain 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624838:1,907,825...2,007,089
Ensembl chrNW_004624838:1,908,527...2,007,052 		JBrowse link
G Brd2 bromodomain containing 2 involved_in ISO (PMID:18406326) UniProt PMID:18406326 NCBI chrNW_004624754:23,742,506...23,750,668
Ensembl chrNW_004624754:23,742,509...23,750,062 		JBrowse link
G Cabin1 calcineurin binding protein 1 involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004624747:10,110,476...10,257,165
Ensembl chrNW_004624747:10,110,370...10,257,276 		JBrowse link
G Chaf1a chromatin assembly factor 1 subunit A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:5,266,676...5,302,061
Ensembl chrNW_004624828:5,266,932...5,302,067 		JBrowse link
G Chaf1b chromatin assembly factor 1 subunit B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624745:27,094,302...27,117,957
Ensembl chrNW_004624745:27,095,361...27,117,669 		JBrowse link
G Chrac1 chromatin accessibility complex subunit 1 involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004624735:15,843,539...15,862,700
Ensembl chrNW_004624735:15,856,796...15,862,818 		JBrowse link
G Daxx death domain associated protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624754:23,504,465...23,509,034
Ensembl chrNW_004624754:23,505,386...23,509,241 		JBrowse link
G Dnajc9 DnaJ heat shock protein family (Hsp40) member C9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624754:6,913,377...6,920,533
Ensembl chrNW_004624754:6,913,397...6,919,476 		JBrowse link
G Grwd1 glutamate rich WD repeat containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624832:5,354,259...5,360,171
Ensembl chrNW_004624832:5,354,176...5,360,233 		JBrowse link
G H1-1 H1.1 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:885,994...901,354
Ensembl chrNW_004624756:885,994...886,641 		JBrowse link
G H1-4 H1.4 linker histone, cluster member involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:771,688...772,950
Ensembl chrNW_004624756:772,241...772,903 		JBrowse link
G H3-4 H3.4 histone, cluster member involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624937:1,122,586...1,123,425
Ensembl chrNW_004624937:1,122,707...1,123,114 		JBrowse link
G Hat1 histone acetyltransferase 1 involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004624787:9,343,124...9,402,630
Ensembl chrNW_004624787:9,346,741...9,403,700 		JBrowse link
G Hmgb1 high mobility group box 1 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004624776:7,858,400...7,862,716
Ensembl chrNW_004624776:7,793,259...7,863,184 		JBrowse link
G Hmgb2 high mobility group box 2 involved_in ISO (PMID:2465778) AgBase PMID:2465778 NCBI chrNW_004624769:4,834,998...4,837,111 JBrowse link
G Hp1bp3 heterochromatin protein 1 binding protein 3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624764:5,760,002...5,794,705 JBrowse link
G Kat6a lysine acetyltransferase 6A involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624780:1,237,326...1,378,718
Ensembl chrNW_004624780:1,240,292...1,376,072 		JBrowse link
G Kat6b lysine acetyltransferase 6B involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624754:8,204,266...8,391,328
Ensembl chrNW_004624754:8,204,943...8,392,724 		JBrowse link
G LOC101698172 histone H3.3 involved_in ISO (PMID:25615412)
(PMID:21636898)		 UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004624801:5,668,661...5,672,164 JBrowse link
G LOC101699418 histone H3.3 involved_in ISO (PMID:21636898)
(PMID:25615412)		 UniProt PMID:21636898 PMID:25615412 NCBI chrNW_004624807:194,372...203,205 JBrowse link
G LOC101699549 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:745,170...747,430
Ensembl chrNW_004624756:745,399...878,556
Ensembl chrNW_004624756:745,399...878,556 		JBrowse link
G LOC101702177 histone H1.3 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:710,944...720,849
Ensembl chrNW_004624756:710,981...711,640 		JBrowse link
G LOC101706296 core histone macro-H2A.1 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624733:11,650,067...11,714,399
Ensembl chrNW_004624733:11,650,537...11,715,999 		JBrowse link
G LOC101707460 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:881,773...882,657 JBrowse link
G LOC101708105 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624772:17,624,377...17,625,670 JBrowse link
G LOC101708642 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:24,178,207...24,178,518
Ensembl chrNW_004624756:24,178,207...24,178,518 		JBrowse link
G LOC101709836 histone H1.2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624756:853,297...854,774 JBrowse link
G LOC101711652 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:24,442,856...24,443,520
Ensembl chrNW_004624756:24,442,948...24,443,259 		JBrowse link
G LOC101712013 core histone macro-H2A.2 involved_in IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000104 NCBI chrNW_004624754:4,227,897...4,276,595
Ensembl chrNW_004624754:4,227,644...4,279,077 		JBrowse link
G LOC101713307 protein HIRA involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004624747:9...95,643 JBrowse link
G LOC101713689 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:24,478,197...24,479,148 JBrowse link
G LOC101715206 histone H2B type 1-A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624756:1,319,030...1,324,732
Ensembl chrNW_004624756:1,324,305...1,324,688 		JBrowse link
G LOC101717518 histone H1.0 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624752:10,103,866...10,105,983 JBrowse link
G LOC101719930 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:23,249,356...23,250,067
Ensembl chrNW_004624752:23,243,077...23,249,832 		JBrowse link
G LOC101726086 histone H1.0 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624737:3,363,234...3,366,140 JBrowse link
G LOC106009613 uncharacterized LOC106009613 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:706,294...727,052
Ensembl chrNW_004624756:706,316...706,627 		JBrowse link
G LOC110343840 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:878,090...878,612 JBrowse link
G LOC110349749 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:674,681...675,226 JBrowse link
G LOC110349750 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:700,735...701,970 JBrowse link
G LOC110349754 histone H4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:817,469...819,714 JBrowse link
G Naa60 N-alpha-acetyltransferase 60, NatF catalytic subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624824:1,255,274...1,289,413
Ensembl chrNW_004624824:1,264,660...1,286,925 		JBrowse link
G Nap1l1 nucleosome assembly protein 1 like 1 involved_in IEA TreeGrafter
InterPro		 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624750:21,966,021...22,005,480 JBrowse link
G Nap1l4 nucleosome assembly protein 1 like 4 involved_in IEA TreeGrafter
Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004624767:15,690,848...15,735,618
Ensembl chrNW_004624767:15,690,848...15,735,969 		JBrowse link
G Npm1 nucleophosmin 1 involved_in ISO (PMID:11602260) UniProt PMID:11602260 NCBI chrNW_004624733:18,645,269...18,655,073 JBrowse link
G Padi4 peptidyl arginine deiminase 4 involved_in ISO (MGI:5545819|PMID:24463520) UniProt PMID:24463520 MGI:5545819 NCBI chrNW_004624764:2,871,002...2,898,748
Ensembl chrNW_004624764:2,871,078...2,898,584 		JBrowse link
G Pole3 DNA polymerase epsilon 3, accessory subunit involved_in ISO (PMID:14759371) ComplexPortal PMID:14759371 NCBI chrNW_004624760:21,692,734...21,695,636
Ensembl chrNW_004624760:21,692,715...21,695,826 		JBrowse link
G Rbbp4 RB binding protein 4, chromatin remodeling factor involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004624764:15,800,143...15,823,319 JBrowse link
G Rsf1 remodeling and spacing factor 1 involved_in ISO (PMID:12972596)
(PMID:11691835)		 UniProt
ComplexPortal		 PMID:11691835 PMID:12972596 NCBI chrNW_004624863:724,646...858,132
Ensembl chrNW_004624863:725,389...858,444 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) UniProt PMID:24526689 NCBI chrNW_004624747:11,775,012...11,807,597
Ensembl chrNW_004624747:11,775,039...11,807,552 		JBrowse link
G Set SET nuclear proto-oncogene involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:6,293,452...6,304,237 JBrowse link
G Shprh SNF2 histone linker PHD RING helicase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624753:8,498,335...8,580,333
Ensembl chrNW_004624753:8,507,066...8,580,214 		JBrowse link
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 involved_in ISO (PMID:12972596), (PMID:14759371)
(PMID:11691835)		 ComplexPortal PMID:11691835 PMID:12972596 PMID:14759371 NCBI chrNW_004624848:3,569,744...3,611,104 JBrowse link
G Smyd3 SET and MYND domain containing 3 acts_upstream_of_or_within ISO (PMID:23752591) MGI PMID:23752591 NCBI chrNW_004624771:13,149,547...13,943,352
Ensembl chrNW_004624771:13,149,649...13,943,137 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO (PMID:20484372) UniProt PMID:20484372 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596 		JBrowse link
G Spty2d1 SPT2 chromatin protein domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624766:10,039,232...10,061,908 JBrowse link
G Tspyl2 TSPY like 2 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624909:322,681...329,299
Ensembl chrNW_004624909:323,040...329,410 		JBrowse link
G Tspyl4 TSPY like 4 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624856:2,238,115...2,246,432 JBrowse link
G Tspyl5 TSPY like 5 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624763:4,564,966...4,569,495
Ensembl chrNW_004624763:4,568,123...4,569,664 		JBrowse link
G Ubn1 ubinuclein 1 involved_in ISO (PMID:14718166) GO_Central PMID:14718166 NCBI chrNW_004624824:2,693,270...2,720,305
Ensembl chrNW_004624824:2,693,403...2,720,305 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15093
    cellular process 14237
      cellular component organization or biogenesis 6217
        cellular component organization 6020
          protein-containing complex organization 2052
            protein-DNA complex organization 657
              chromatin organization 593
                nucleosome assembly 62
                  positive regulation of nucleosome disassembly 0
Path 2
Term Annotations click to browse term
  biological_process 15093
    cellular process 14237
      cellular component organization or biogenesis 6217
        cellular component organization 6020
          protein-containing complex organization 2052
            protein-DNA complex organization 657
              chromatin organization 593
                chromatin remodeling 502
                  nucleosome organization 83
                    nucleosome assembly 62
                      positive regulation of nucleosome disassembly 0
paths to the root