Nap1l1 (nucleosome assembly protein 1 like 1) - Rat Genome Database

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Gene: Nap1l1 (nucleosome assembly protein 1 like 1) Heterocephalus glaber
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Symbol: Nap1l1
Name: nucleosome assembly protein 1 like 1
RGD ID: 18919354
Description: ENCODES a protein that exhibits histone chaperone activity (ortholog); kinase binding (ortholog); INVOLVED IN cellular response to peptide hormone stimulus (ortholog); positive regulation of neural precursor cell proliferation (ortholog); positive regulation of neurogenesis (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH appendiceal neoplasm (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: nucleosome assembly protein 1-like 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475021,966,021 - 22,005,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromatin  (IEA)
cytoplasm  (IEA)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nap1l1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475021,966,021 - 22,005,480 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
NAP1L1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381276,036,585 - 76,084,685 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1276,036,585 - 76,084,735 (-)EnsemblGRCh38hg38GRCh38
GRCh371276,430,365 - 76,478,465 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361274,726,221 - 74,764,717 (-)NCBINCBI36Build 36hg18NCBI36
Build 341274,726,224 - 74,764,717NCBI
Celera1276,105,836 - 76,145,881 (-)NCBICelera
Cytogenetic Map12q21.2NCBI
HuRef1273,488,713 - 73,528,719 (-)NCBIHuRef
CHM1_11276,404,610 - 76,444,687 (-)NCBICHM1_1
T2T-CHM13v2.01276,011,669 - 76,059,726 (-)NCBIT2T-CHM13v2.0
Nap1l1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910111,308,754 - 111,334,011 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10111,309,084 - 111,334,011 (+)EnsemblGRCm39 Ensembl
GRCm3810111,472,882 - 111,498,150 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10111,473,223 - 111,498,150 (+)EnsemblGRCm38mm10GRCm38
MGSCv3710110,910,248 - 110,935,206 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3610110,884,727 - 110,902,252 (+)NCBIMGSCv36mm8
Celera10113,416,423 - 113,441,366 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1058.67NCBI
Nap1l1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8748,819,464 - 48,844,108 (+)NCBIGRCr8
mRatBN7.2746,933,278 - 46,957,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl746,933,356 - 46,956,593 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx748,833,036 - 48,856,337 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0751,036,091 - 51,059,392 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0750,813,953 - 50,837,254 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0754,213,305 - 54,237,880 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl754,213,319 - 54,236,625 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0754,238,038 - 54,262,614 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4750,506,870 - 50,530,177 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1750,527,406 - 50,550,142 (+)NCBI
Celera743,730,965 - 43,754,274 (+)NCBICelera
Cytogenetic Map7q22NCBI
Nap1l1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540515,330,328 - 15,365,208 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540515,332,696 - 15,365,181 (-)NCBIChiLan1.0ChiLan1.0
NAP1L1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21084,067,377 - 84,105,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11284,063,769 - 84,102,199 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01273,549,887 - 73,589,621 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11276,402,906 - 76,441,815 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1276,402,906 - 76,441,815 (-)Ensemblpanpan1.1panPan2
NAP1L1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11519,141,803 - 19,175,576 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1519,143,284 - 19,175,581 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1519,624,067 - 19,659,864 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01519,478,079 - 19,513,939 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1519,477,927 - 19,514,525 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11519,080,341 - 19,116,126 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01519,136,918 - 19,172,670 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01519,266,054 - 19,301,904 (-)NCBIUU_Cfam_GSD_1.0
Nap1l1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494541,277,724 - 41,313,258 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365684,419,652 - 4,440,608 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365684,416,225 - 4,440,566 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NAP1L1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl539,328,052 - 39,363,711 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1539,329,628 - 39,363,699 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2542,892,559 - 42,926,668 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NAP1L1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11171,639,965 - 71,679,131 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1171,522,837 - 71,678,825 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037173,870,263 - 173,909,998 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


RefSeq Acc Id: XM_021258508   ⟹   XP_021114167
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,977,467 - 21,999,686 (+)NCBI
RefSeq Acc Id: XM_021258509   ⟹   XP_021114168
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,977,467 - 22,005,480 (+)NCBI
RefSeq Acc Id: XM_021258510   ⟹   XP_021114169
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,966,864 - 21,999,686 (+)NCBI
RefSeq Acc Id: XM_021258511   ⟹   XP_021114170
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,977,467 - 21,997,541 (+)NCBI
RefSeq Acc Id: XM_021258512   ⟹   XP_021114171
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,966,021 - 21,999,686 (+)NCBI
RefSeq Acc Id: XM_021258513   ⟹   XP_021114172
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,966,048 - 21,999,686 (+)NCBI
RefSeq Acc Id: XM_021258515   ⟹   XP_021114174
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462475021,974,750 - 21,999,686 (+)NCBI
RefSeq Acc Id: XP_021114171   ⟸   XM_021258512
- Peptide Label: isoform X1
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114172   ⟸   XM_021258513
- Peptide Label: isoform X1
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114169   ⟸   XM_021258510
- Peptide Label: isoform X2
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114174   ⟸   XM_021258515
- Peptide Label: isoform X1
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114168   ⟸   XM_021258509
- Peptide Label: isoform X1
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114167   ⟸   XM_021258508
- Peptide Label: isoform X1
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021114170   ⟸   XM_021258511
- Peptide Label: isoform X3
- UniProtKB: G5AXD0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014189 ENTREZGENE
Ensembl Transcript ENSHGLT00000020023 ENTREZGENE
Gene3D-CATH 1.20.5.1500 UniProtKB/TrEMBL
  Nucleosome assembly protein UniProtKB/TrEMBL
InterPro NAP-like_sf UniProtKB/TrEMBL
  NAP_family UniProtKB/TrEMBL
NCBI Gene Nap1l1 ENTREZGENE
PANTHER NAP1L1 PROTEIN UniProtKB/TrEMBL
  TESTIS-SPECIFIC Y-ENCODED PROTEIN UniProtKB/TrEMBL
Pfam NAP UniProtKB/TrEMBL
Superfamily-SCOP NAP-like UniProtKB/TrEMBL
UniProt G5AXD0 ENTREZGENE, UniProtKB/TrEMBL