Asf1b (anti-silencing function 1B histone chaperone) - Rat Genome Database

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Gene: Asf1b (anti-silencing function 1B histone chaperone) Heterocephalus glaber
Analyze
Symbol: Asf1b
Name: anti-silencing function 1B histone chaperone
RGD ID: 18902707
Description: ENCODES a protein that exhibits histone chaperone activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); nucleosome assembly (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); castration-resistant prostate carcinoma (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Histone chaperone ASF1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,342,765 - 1,354,165 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,342,855 - 1,354,196 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:21993625   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Asf1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,342,765 - 1,354,165 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,342,855 - 1,354,196 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ASF1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,119,512 - 14,136,589 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,119,512 - 14,136,613 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,230,324 - 14,247,401 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,091,321 - 14,108,440 (-)NCBINCBI36Build 36hg18NCBI36
Build 341914,091,342 - 14,108,429NCBI
Celera1914,124,596 - 14,141,712 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1913,801,888 - 13,818,881 (-)NCBIHuRef
CHM1_11914,230,740 - 14,247,871 (-)NCBICHM1_1
T2T-CHM13v2.01914,246,124 - 14,263,201 (-)NCBIT2T-CHM13v2.0
Asf1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,682,323 - 84,696,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,682,136 - 84,696,826 (+)EnsemblGRCm39 Ensembl
GRCm38883,955,694 - 83,970,195 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl883,955,507 - 83,970,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,479,593 - 86,494,094 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,845,799 - 86,860,300 (+)NCBIMGSCv36mm8
Celera888,249,392 - 88,263,700 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.22NCBI
Asf1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,085,786 - 41,100,352 (-)NCBIGRCr8
mRatBN7.21924,181,024 - 24,195,604 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,181,028 - 24,195,549 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1931,002,160 - 31,016,725 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01931,656,566 - 31,671,131 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01933,879,281 - 33,893,844 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01925,077,918 - 25,092,491 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,077,918 - 25,092,491 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,055,967 - 36,070,506 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,867,384 - 25,881,909 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11925,872,530 - 25,887,149 (-)NCBI
Celera1923,729,321 - 23,743,692 (-)NCBICelera
Cytogenetic Map19q11NCBI
Asf1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,817,547 - 32,828,651 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,818,592 - 32,828,651 (-)NCBIChiLan1.0ChiLan1.0
ASF1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,051,940 - 19,069,654 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,053,309 - 18,071,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,685,617 - 13,702,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,411,127 - 14,428,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,411,127 - 14,428,917 (-)Ensemblpanpan1.1panPan2
ASF1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,398,615 - 48,406,889 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,272,803 - 48,281,403 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,916,074 - 48,924,671 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,916,420 - 48,924,670 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,127,279 - 48,135,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,553,848 - 48,562,442 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,796,639 - 48,805,239 (+)NCBIUU_Cfam_GSD_1.0
Asf1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,571,966 - 207,582,396 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,770,900 - 2,782,748 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,772,310 - 2,782,687 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASF1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,062,766 - 65,072,679 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,063,186 - 65,072,681 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,338,722 - 65,348,216 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASF1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,760,865 - 12,773,423 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660746,870,179 - 6,886,353 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013009   ⟹   ENSHGLP00000012872
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046249011,342,765 - 1,354,165 (-)Ensembl
RefSeq Acc Id: XM_004872472   ⟹   XP_004872529
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046249011,342,855 - 1,354,196 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004872529 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHB14443 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012872
  ENSHGLP00100016380
GenBank Protein JAO03145 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004872529   ⟸   XM_004872472
- UniProtKB: G5BYT2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000012872   ⟸   ENSHGLT00000013009


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009203 Ensembl, ENTREZGENE
  ENSHGLG00100012093 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000013009 ENTREZGENE
  ENSHGLT00100016559 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.1490 UniProtKB/TrEMBL
InterPro ASF1-like UniProtKB/TrEMBL
  ASF1-like_sf UniProtKB/TrEMBL
KEGG Report hgl:101707852 UniProtKB/TrEMBL
NCBI Gene Asf1b ENTREZGENE
PANTHER HISTONE CHAPERONE ASF1B UniProtKB/TrEMBL
  PTHR12040 UniProtKB/TrEMBL
Pfam ASF1_hist_chap UniProtKB/TrEMBL
Superfamily-SCOP SSF101546 UniProtKB/TrEMBL
UniProt G5BYT2 ENTREZGENE, UniProtKB/TrEMBL