Spty2d1 (SPT2 chromatin protein domain containing 1) - Rat Genome Database

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Gene: Spty2d1 (SPT2 chromatin protein domain containing 1) Heterocephalus glaber
Analyze
Symbol: Spty2d1
Name: SPT2 chromatin protein domain containing 1
RGD ID: 18926336
Description: ENCODES a protein that exhibits histone chaperone activity (ortholog); INVOLVED IN heterochromatin formation (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypertrophic cardiomyopathy 12 (ortholog); intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein SPT2 homolog; SPT2-like protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476610,039,232 - 10,061,908 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA)
nucleoplasm  (ISO)

Molecular Function

References
Additional References at PubMed
PMID:21993625   PMID:30032202  


Genomics

Comparative Map Data
Spty2d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476610,039,232 - 10,061,908 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SPTY2D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381118,606,403 - 18,634,342 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1118,606,403 - 18,634,791 (-)EnsemblGRCh38hg38GRCh38
GRCh371118,627,950 - 18,655,889 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361118,584,524 - 18,612,596 (-)NCBINCBI36Build 36hg18NCBI36
Celera1118,762,827 - 18,790,934 (-)NCBICelera
Cytogenetic Map11p15.1NCBI
HuRef1118,312,969 - 18,341,076 (-)NCBIHuRef
CHM1_11118,627,298 - 18,655,375 (-)NCBICHM1_1
T2T-CHM13v2.01118,704,496 - 18,732,445 (-)NCBIT2T-CHM13v2.0
Spty2d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39746,640,144 - 46,658,162 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl746,640,144 - 46,658,159 (-)EnsemblGRCm39 Ensembl
GRCm38746,990,396 - 47,008,414 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl746,990,396 - 47,008,411 (-)EnsemblGRCm38mm10GRCm38
MGSCv37754,245,766 - 54,263,784 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36746,858,720 - 46,876,231 (-)NCBIMGSCv36mm8
Celera742,472,870 - 42,491,094 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map730.66NCBI
Spty2d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81106,667,750 - 106,685,871 (-)NCBIGRCr8
mRatBN7.2197,531,495 - 97,549,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl197,531,508 - 97,549,581 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1102,923,817 - 102,941,900 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01111,395,802 - 111,413,885 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01104,679,818 - 104,697,939 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01103,115,280 - 103,129,438 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1103,115,216 - 103,128,743 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01104,180,399 - 104,194,428 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera191,778,148 - 91,796,374 (-)NCBICelera
Cytogenetic Map1q22NCBI
Spty2d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541433,256,850 - 33,272,556 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541433,255,048 - 33,272,861 (-)NCBIChiLan1.0ChiLan1.0
SPTY2D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2920,916,162 - 20,945,539 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11120,876,560 - 20,905,945 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01118,636,884 - 18,665,108 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11118,318,239 - 18,580,399 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1118,321,700 - 18,580,419 (-)Ensemblpanpan1.1panPan2
SPTY2D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12141,021,317 - 41,042,955 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2141,023,629 - 41,042,492 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2140,499,984 - 40,521,974 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02142,144,127 - 42,166,096 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2142,144,141 - 42,165,589 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12141,146,012 - 41,167,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02141,324,103 - 41,346,270 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02141,701,955 - 41,723,954 (-)NCBIUU_Cfam_GSD_1.0
Spty2d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494744,633,473 - 44,654,998 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936528667,348 - 689,291 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936528667,453 - 689,291 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SPTY2D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl240,582,984 - 40,604,038 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1240,581,816 - 40,604,040 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2243,593,394 - 43,614,258 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SPTY2D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1146,289,350 - 46,315,653 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl146,289,466 - 46,316,910 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038143,630,912 - 143,658,683 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021263902   ⟹   XP_021119561
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476610,040,153 - 10,061,908 (-)NCBI
RefSeq Acc Id: XM_021263903   ⟹   XP_021119562
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462476610,039,232 - 10,061,908 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021119561 (Get FASTA)   NCBI Sequence Viewer  
  XP_021119562 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EHA97459 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000011550
  ENSHGLP00100007400
Reference Protein Sequences
RefSeq Acc Id: XP_021119562   ⟸   XM_021263903
- Peptide Label: isoform X2
- UniProtKB: G5AK99 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021119561   ⟸   XM_021263902
- Peptide Label: isoform X1
- UniProtKB: G5AK99 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008282 ENTREZGENE
  ENSHGLG00100005537 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000011677 ENTREZGENE
  ENSHGLT00100007496 UniProtKB/TrEMBL
InterPro Chromatin_SPT2 UniProtKB/TrEMBL
NCBI Gene Spty2d1 ENTREZGENE
PANTHER PROTEIN SPT2 HOMOLOG UniProtKB/TrEMBL
  YEAST SPT2-RELATED UniProtKB/TrEMBL
Pfam SPT2 UniProtKB/TrEMBL
SMART SPT2 UniProtKB/TrEMBL
UniProt G5AK99 ENTREZGENE, UniProtKB/TrEMBL