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sudden infant death syndrome - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:sudden infant death syndrome
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Accession:DOID:9007 term browser browse the term
Definition:A syndrome that is characterized by the sudden death of an infant that is not predicted by medical history and remains unexplained after a thorough forensic autopsy and detailed death scene investigation. (DO)
Synonyms:exact_synonym: SID;   SIDS;   cot death;   cot deaths;   crib death;   sudden death of nonspecific cause in infancy;   sudden infant death
 primary_id: MESH:D013398
 alt_id: MIM:272120
 xref: EFO:0005303;   GARD:7711;   ICD9CM:798.0;   NCI:C85173

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sudden infant death syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKAP10 A-kinase anchoring protein 10 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 NCBI chr 5:40,242,709...40,333,071
Ensembl chr 5:40,245,770...40,329,982 		JBrowse link
G ALG13 ALG13 UDP-N-acetylglucosaminyltransferase subunit ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 NCBI chr  X:84,752,284...84,825,414 JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28492532 NCBI chr20:48,747,087...49,036,627
Ensembl chr20:48,821,025...49,036,032 		JBrowse link
G CALM2 calmodulin 2 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar NCBI chr10:49,299,698...49,314,533
Ensembl chr10:49,299,897...49,314,457 		JBrowse link
G CAV3 caveolin 3 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:12666119 PMID:15580566 PMID:25741868 PMID:28492532 PMID:35027292 NCBI chr20:9,384,901...9,398,055
Ensembl chr20:9,384,901...9,401,196 		JBrowse link
G CHRNA7 cholinergic receptor nicotinic alpha 7 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:22000980 NCBI chr 3:36,852,082...37,164,930
Ensembl chr 3:36,852,543...36,978,399 		JBrowse link
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit ISO CTD Direct Evidence: marker/mechanism CTD PMID:22000980 NCBI chr 7:42,786,505...42,797,976
Ensembl chr 7:42,789,600...42,795,722 		JBrowse link
G DEPDC5 DEP domain containing 5, GATOR1 subcomplex subunit ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 NCBI chr26:24,629,369...24,754,728
Ensembl chr26:24,630,295...24,754,256 		JBrowse link
G DYRK1A dual specificity tyrosine phosphorylation regulated kinase 1A ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 NCBI chr31:32,564,970...32,655,232
Ensembl chr31:32,511,502...32,652,572 		JBrowse link
G FLNC filamin C ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:9536098 PMID:17576681 PMID:25741868 PMID:28492532 NCBI chr14:7,792,708...7,819,723
Ensembl chr14:7,793,449...7,819,940 		JBrowse link
G GABRB3 gamma-aminobutyric acid type A receptor subunit beta3 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:11742254 PMID:12189488 PMID:25741868 PMID:28492532 NCBI chr 3:33,878,948...34,101,987
Ensembl chr 3:33,878,904...34,097,764 		JBrowse link
G GPD1L glycerol-3-phosphate dehydrogenase 1 like ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:15140536 PMID:17967976 PMID:19606473 PMID:19815826 PMID:22995991 More... NCBI chr23:12,568,914...12,631,903
Ensembl chr23:12,522,398...12,632,447 		JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28492532 PMID:30461122 PMID:35027292 PMID:38816749 NCBI chr31:29,858,428...29,868,315 JBrowse link
G KCNH2 potassium voltage-gated channel subfamily H member 2 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:15913580 PMID:17210839 PMID:18222468 PMID:18596570 PMID:18675227 More... NCBI chr16:15,009,031...15,041,786
Ensembl chr16:15,009,031...15,041,504 		JBrowse link
G KCNJ2 potassium inwardly rectifying channel subfamily J member 2 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28341588 PMID:28492532 PMID:29874177 NCBI chr 9:16,468,938...16,475,722
Ensembl chr 9:16,468,938...16,475,722 		JBrowse link
G KCNJ8 potassium inwardly rectifying channel subfamily J member 8 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28492532 NCBI chr27:25,368,565...25,375,754
Ensembl chr27:25,368,810...25,375,009 		JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME | ClinVar Annotator: match by term: Sudden Infant Death ClinVar PMID:15913580 PMID:16534005 PMID:17210839 PMID:17222736 PMID:17470695 More... NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043 		JBrowse link
G MT-ND1 mitochondrially encoded NADH:ubiquinone oxidoreductase core subunit 1 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:9299504 PMID:9806551 PMID:10519336 PMID:10521313 PMID:12160969 More... NCBI chr MT:2,747...3,702
Ensembl chr MT:2,747...3,703 		JBrowse link
G MYBPC3 myosin binding protein C3 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:9048664 PMID:9562578 PMID:11499718 PMID:11499719 PMID:12707239 More... NCBI chr18:42,271,159...42,288,782
Ensembl chr18:42,271,724...42,289,215 		JBrowse link
G OXTR oxytocin receptor ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:12666119 PMID:15580566 PMID:25741868 PMID:28492532 PMID:35027292 NCBI chr20:9,358,797...9,382,308
Ensembl chr20:9,358,916...9,378,343 		JBrowse link
G PDHA1 pyruvate dehydrogenase E1 subunit alpha 1 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:8962591 PMID:20002125 PMID:20002461 PMID:24718837 PMID:25741868 More... NCBI chr  X:15,338,364...15,354,011
Ensembl chr  X:15,338,202...15,387,458 		JBrowse link
G SCN1A sodium voltage-gated channel alpha subunit 1 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28492532 PMID:29601086 NCBI chr36:11,105,936...11,245,978
Ensembl chr36:11,108,050...11,183,496 		JBrowse link
G SCN1B sodium voltage-gated channel beta subunit 1 ISO CTD Direct Evidence: marker/mechanism CTD PMID:22155597 NCBI chr 1:117,504,428...117,510,666
Ensembl chr 1:117,503,828...117,511,727 		JBrowse link
G SCN4A sodium voltage-gated channel alpha subunit 4 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28492532 PMID:29605429 PMID:35027292 NCBI chr 9:11,849,066...11,893,689
Ensembl chr 9:11,851,347...11,877,767 		JBrowse link
G SCN4B sodium voltage-gated channel beta subunit 4 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:20226894 PMID:23465283 PMID:23861362 PMID:25741868 PMID:28492532 More... NCBI chr 5:15,552,347...15,564,085
Ensembl chr 5:15,543,632...15,563,486 		JBrowse link
G SCN5A sodium voltage-gated channel alpha subunit 5 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME | ClinVar Annotator: match by term: Sudden Infant Death OMIM
ClinVar		 PMID:235504 PMID:291807 PMID:461398 PMID:748006 PMID:1309946 More... NCBI chr23:8,278,844...8,374,614
Ensembl chr23:8,280,793...8,358,560 		JBrowse link
G SCN8A sodium voltage-gated channel alpha subunit 8 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 PMID:28492532 NCBI chr27:3,174,257...3,348,349
Ensembl chr27:3,176,013...3,296,482 		JBrowse link
G SLC6A4 solute carrier family 6 member 4 ISO CTD Direct Evidence: marker/mechanism
OMIM:272120		 CTD
MouseDO		 PMID:12599191 NCBI chr 9:44,224,026...44,259,655
Ensembl chr 9:44,224,229...44,259,736 		JBrowse link
G SNTA1 syntrophin alpha 1 susceptibility ISO DNA:missense mutations:cds:multiple RGD PMID:20009079 RGD:6771369 NCBI chr24:22,636,716...22,665,828
Ensembl chr24:22,636,756...22,665,741 		JBrowse link
G TCF4 transcription factor 4 ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:25741868 NCBI chr 1:20,060,788...20,417,367
Ensembl chr 1:20,060,788...20,417,348 		JBrowse link
G TNNI3 troponin I3, cardiac type ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME | ClinVar Annotator: match by term: Sudden Infant Death ClinVar PMID:9241277 PMID:10098965 PMID:11735257 PMID:12531876 PMID:12707239 More... NCBI chr 1:102,475,146...102,478,319
Ensembl chr 1:102,475,146...102,478,318 		JBrowse link
G TSPYL1 TSPY like 1 ISO sudden infant death with dysgenesis of the testes syndrome (SIDDT), OMIM:608800 RGD PMID:15273283 RGD:1599672 NCBI chr12:71,933,904...71,937,508
Ensembl chr12:71,935,792...71,937,285 		JBrowse link
G TTN titin ISO ClinVar Annotator: match by term: SUDDEN INFANT DEATH SYNDROME ClinVar PMID:17344846 PMID:22335739 PMID:23975875 PMID:24033266 PMID:25589632 More... NCBI chr36:22,146,870...22,417,858
Ensembl chr36:22,147,824...22,417,826 		JBrowse link
G VEGFA vascular endothelial growth factor A ISO protein:increased expression:cerebrospinal fluid RGD PMID:12563064 RGD:634255 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965 		JBrowse link
G VHL von Hippel-Lindau tumor suppressor ISO OMIM:272120 MouseDO NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323 		JBrowse link
Sudden Infant Death with Dysgenesis of the Testes Syndrome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSE dermatan sulfate epimerase ISO ClinVar Annotator: match by term: Sudden infant death with dysgenesis of the testes syndrome | ClinVar Annotator: match by term: TSPYL1-related condition ClinVar PMID:15273283 PMID:25741868 PMID:28492532 NCBI chr 1:56,787,809...56,868,037
Ensembl chr 1:56,787,256...56,867,716 		JBrowse link
G TSPYL1 TSPY like 1 ISO ClinVar Annotator: match by term: Sudden infant death with dysgenesis of the testes syndrome | ClinVar Annotator: match by term: TSPYL1-related condition OMIM
ClinVar		 PMID:15273283 PMID:25741868 PMID:28492532 NCBI chr12:71,933,904...71,937,508
Ensembl chr12:71,935,792...71,937,285 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 15758
    syndrome 10622
      sudden infant death syndrome 36
        Sudden Infant Death with Dysgenesis of the Testes Syndrome 2
Path 2
Term Annotations click to browse term
  disease 15758
    Pathological Conditions, Signs and Symptoms 12323
      Pathologic Processes 7822
        Death 171
          Infant Death 43
            sudden infant death syndrome 36
              Sudden Infant Death with Dysgenesis of the Testes Syndrome 2
paths to the root