TCF4 (transcription factor 4) - Rat Genome Database

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Gene: TCF4 (transcription factor 4) Canis lupus familiaris
Analyze
Symbol: TCF4
Name: transcription factor 4
RGD ID: 12410862
Description: ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN endothelial cell activation (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Corneal Dystrophy, Fuchs Endothelial, 3 (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN beta-catenin-TCF complex (inferred); beta-catenin-TCF7L2 complex (inferred); chromatin (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: immunoglobulin transcription factor 2; ITF-2; TCF-4; thyroglobulin promoter transcription factor TFE; transcription factor 7-like 2 (T-cell specific, HMG-box)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1120,060,788 - 20,417,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl120,060,788 - 20,417,348 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,044,957 - 21,401,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0119,945,098 - 20,307,635 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl119,945,046 - 20,305,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1120,000,058 - 20,356,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0119,895,148 - 20,251,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0120,166,172 - 20,523,442 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:1840650   PMID:2320428   PMID:19295128   PMID:22301074   PMID:25403511   PMID:30032202  


Genomics

Comparative Map Data
TCF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1120,060,788 - 20,417,367 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl120,060,788 - 20,417,348 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha121,044,957 - 21,401,584 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0119,945,098 - 20,307,635 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl119,945,046 - 20,305,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1120,000,058 - 20,356,878 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0119,895,148 - 20,251,707 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0120,166,172 - 20,523,442 (+)NCBIUU_Cfam_GSD_1.0
TCF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381855,222,185 - 55,635,957 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1855,222,185 - 55,664,787 (-)EnsemblGRCh38hg38GRCh38
GRCh371852,889,416 - 53,303,188 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361851,040,560 - 51,406,858 (-)NCBINCBI36Build 36hg18NCBI36
Build 341851,045,966 - 51,406,441NCBI
Celera1849,606,934 - 49,973,119 (-)NCBICelera
Cytogenetic Map18q21.2NCBI
HuRef1849,599,225 - 50,013,477 (-)NCBIHuRef
CHM1_11852,884,825 - 53,298,977 (-)NCBICHM1_1
T2T-CHM13v2.01855,425,274 - 55,839,077 (-)NCBIT2T-CHM13v2.0
Tcf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391869,476,500 - 69,821,038 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1869,476,427 - 69,822,150 (+)EnsemblGRCm39 Ensembl
GRCm381869,343,429 - 69,687,967 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1869,343,356 - 69,689,079 (+)EnsemblGRCm38mm10GRCm38
MGSCv371869,504,146 - 69,847,621 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361869,469,890 - 69,809,713 (+)NCBIMGSCv36mm8
Celera1870,630,746 - 70,974,890 (+)NCBICelera
Cytogenetic Map18E2NCBI
cM Map1843.23NCBI
Tcf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81865,216,840 - 65,563,186 (+)NCBIGRCr8
mRatBN7.21862,941,739 - 63,288,126 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1862,943,782 - 63,284,425 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1865,021,713 - 65,360,258 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01865,713,660 - 66,051,972 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01863,570,321 - 63,908,645 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01865,285,320 - 65,507,983 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1865,155,685 - 65,507,977 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01864,471,373 - 64,694,036 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41866,135,863 - 66,359,984 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11866,209,063 - 66,433,179 (+)NCBI
Celera1861,145,273 - 61,368,542 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Tcf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540239,735,600 - 40,066,151 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540239,735,596 - 40,066,151 (-)NCBIChiLan1.0ChiLan1.0
TCF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21772,749,860 - 73,162,662 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11858,441,348 - 58,855,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01848,603,069 - 48,969,010 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11851,938,357 - 52,351,679 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1851,938,357 - 52,352,030 (-)Ensemblpanpan1.1panPan2
Tcf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494433,171,849 - 33,525,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364978,410,860 - 8,764,296 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364978,410,882 - 8,765,678 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1104,719,151 - 105,079,919 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11104,718,809 - 105,079,919 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21115,117,555 - 115,353,531 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TCF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11824,116,595 - 24,483,037 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1824,116,547 - 24,478,228 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660601,054,633 - 1,421,014 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tcf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624792686,774 - 1,027,397 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624792686,360 - 1,030,199 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TCF4
3479 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 1 14 6 6 12 10 3
Low 2 4 8 6 6 6 8 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001003268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY514774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X51448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000000232   ⟹   ENSCAFP00000000209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,063,627 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000048913   ⟹   ENSCAFP00000042733
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,060,788 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000064769   ⟹   ENSCAFP00000065118
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,063,627 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000070690   ⟹   ENSCAFP00000062670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,342,856 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000072359   ⟹   ENSCAFP00000048286
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,240,632 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000078297   ⟹   ENSCAFP00000043958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,063,627 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000087833   ⟹   ENSCAFP00000050450
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,135,414 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00000093611   ⟹   ENSCAFP00000055178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl120,062,117 - 20,417,348 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004328   ⟹   ENSCAFP00845003457
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl119,945,046 - 20,302,144 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004386   ⟹   ENSCAFP00845003506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl119,945,084 - 20,303,024 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004401   ⟹   ENSCAFP00845003518
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl119,946,375 - 20,304,528 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004418   ⟹   ENSCAFP00845003533
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl119,947,364 - 20,304,528 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004432   ⟹   ENSCAFP00845003543
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl120,020,214 - 20,303,172 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004445   ⟹   ENSCAFP00845003555
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl120,120,860 - 20,303,496 (+)Ensembl
RefSeq Acc Id: ENSCAFT00845004499   ⟹   ENSCAFP00845003597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl120,207,797 - 20,305,954 (+)Ensembl
RefSeq Acc Id: NM_001003268   ⟹   NP_001003268
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1120,060,788 - 20,417,367 (+)NCBI
Dog10K_Boxer_Tasha121,044,957 - 21,401,584 (+)NCBI
ROS_Cfam_1.0119,945,098 - 20,303,002 (+)NCBI
UMICH_Zoey_3.1120,000,058 - 20,356,878 (+)NCBI
UNSW_CanFamBas_1.0119,895,148 - 20,251,707 (+)NCBI
UU_Cfam_GSD_1.0120,166,172 - 20,523,442 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038653403   ⟹   XP_038509331
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653404   ⟹   XP_038509332
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,351 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653405   ⟹   XP_038509333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,945,501 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653406   ⟹   XP_038509334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653407   ⟹   XP_038509335
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653408   ⟹   XP_038509336
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653409   ⟹   XP_038509337
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653410   ⟹   XP_038509338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653411   ⟹   XP_038509339
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,351 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653413   ⟹   XP_038509341
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,949,086 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653414   ⟹   XP_038509342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,945,602 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653415   ⟹   XP_038509343
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,926 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653416   ⟹   XP_038509344
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,003,743 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653417   ⟹   XP_038509345
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,003,787 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653418   ⟹   XP_038509346
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,051,785 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653419   ⟹   XP_038509347
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,125,576 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653420   ⟹   XP_038509348
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,127,604 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653421   ⟹   XP_038509349
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,207,689 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653422   ⟹   XP_038509350
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,207,688 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653424   ⟹   XP_038509352
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,207,687 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653425   ⟹   XP_038509353
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,205,828 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653426   ⟹   XP_038509354
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0119,946,836 - 20,307,635 (+)NCBI
RefSeq Acc Id: XM_038653427   ⟹   XP_038509355
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0120,207,687 - 20,307,635 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001003268 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509331 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509332 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509333 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509334 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509335 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509336 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509337 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509338 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509339 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509341 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509342 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509343 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509344 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509345 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509346 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509347 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509348 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509349 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509350 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509352 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509353 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509354 (Get FASTA)   NCBI Sequence Viewer  
  XP_038509355 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAT44600 (Get FASTA)   NCBI Sequence Viewer  
  CAA35812 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000000209.5
  ENSCAFP00000042733.3
  ENSCAFP00000043958.2
  ENSCAFP00000048286.2
  ENSCAFP00000050450.2
  ENSCAFP00000055178.2
  ENSCAFP00000062670.2
  ENSCAFP00000065118.2
  ENSCAFP00000068361.1
  ENSCAFP00000075120.1
  ENSCAFP00030008863.1
  ENSCAFP00030009127.1
  ENSCAFP00030009176.1
  ENSCAFP00030009198.1
  ENSCAFP00030009250.1
  ENSCAFP00030009286.1
  ENSCAFP00030009324.1
  ENSCAFP00040016288.1
  ENSCAFP00040016575.1
  ENSCAFP00040016798.1
  ENSCAFP00040016840.1
  ENSCAFP00040016952.1
  ENSCAFP00040017034.1
  ENSCAFP00040017089.1
  ENSCAFP00845003457.1
  ENSCAFP00845003506.1
  ENSCAFP00845003518
  ENSCAFP00845003518.1
  ENSCAFP00845003533
  ENSCAFP00845003533.1
  ENSCAFP00845003543
  ENSCAFP00845003543.1
  ENSCAFP00845003555
  ENSCAFP00845003555.1
  ENSCAFP00845003597
  ENSCAFP00845003597.1
GenBank Protein P15881 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001003268   ⟸   NM_001003268
- UniProtKB: P15881 (UniProtKB/Swiss-Prot),   A0A8P0T7B1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000043958   ⟸   ENSCAFT00000078297
RefSeq Acc Id: ENSCAFP00000065118   ⟸   ENSCAFT00000064769
RefSeq Acc Id: ENSCAFP00000062670   ⟸   ENSCAFT00000070690
RefSeq Acc Id: ENSCAFP00000050450   ⟸   ENSCAFT00000087833
RefSeq Acc Id: ENSCAFP00000000209   ⟸   ENSCAFT00000000232
RefSeq Acc Id: ENSCAFP00000042733   ⟸   ENSCAFT00000048913
RefSeq Acc Id: ENSCAFP00000055178   ⟸   ENSCAFT00000093611
RefSeq Acc Id: ENSCAFP00000048286   ⟸   ENSCAFT00000072359
RefSeq Acc Id: XP_038509333   ⟸   XM_038653405
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509342   ⟸   XM_038653414
- Peptide Label: isoform X7
- UniProtKB: A0A8P0T7B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509332   ⟸   XM_038653404
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509339   ⟸   XM_038653411
- Peptide Label: isoform X7
- UniProtKB: A0A8P0T7B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509331   ⟸   XM_038653403
- Peptide Label: isoform X1
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509336   ⟸   XM_038653408
- Peptide Label: isoform X4
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509335   ⟸   XM_038653407
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509338   ⟸   XM_038653410
- Peptide Label: isoform X6
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509334   ⟸   XM_038653406
- Peptide Label: isoform X2
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509337   ⟸   XM_038653409
- Peptide Label: isoform X5
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509354   ⟸   XM_038653426
- Peptide Label: isoform X15
- UniProtKB: A0A8C0MB93 (UniProtKB/TrEMBL),   A0A8P0TK74 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509343   ⟸   XM_038653415
- Peptide Label: isoform X7
- UniProtKB: A0A8P0T7B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509341   ⟸   XM_038653413
- Peptide Label: isoform X7
- UniProtKB: A0A8P0T7B1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509344   ⟸   XM_038653416
- Peptide Label: isoform X8
- UniProtKB: A0A8C0RDK7 (UniProtKB/TrEMBL),   A0A8I3MLT7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509345   ⟸   XM_038653417
- Peptide Label: isoform X9
- UniProtKB: A0A8P0T357 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509346   ⟸   XM_038653418
- Peptide Label: isoform X9
- UniProtKB: A0A8P0T357 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509347   ⟸   XM_038653419
- Peptide Label: isoform X10
- UniProtKB: A0A8C0S5P2 (UniProtKB/TrEMBL),   A0A8I3MG78 (UniProtKB/TrEMBL),   A0A8P0SX48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509348   ⟸   XM_038653420
- Peptide Label: isoform X10
- UniProtKB: A0A8C0S5P2 (UniProtKB/TrEMBL),   A0A8I3MG78 (UniProtKB/TrEMBL),   A0A8P0SX48 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509353   ⟸   XM_038653425
- Peptide Label: isoform X14
- UniProtKB: A0A8C0LA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509355   ⟸   XM_038653427
- Peptide Label: isoform X16
- UniProtKB: A0A8C0LA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509352   ⟸   XM_038653424
- Peptide Label: isoform X13
- UniProtKB: A0A8C0LA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509350   ⟸   XM_038653422
- Peptide Label: isoform X12
- UniProtKB: A0A8C0LA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038509349   ⟸   XM_038653421
- Peptide Label: isoform X11
- UniProtKB: A0A8C0L713 (UniProtKB/TrEMBL),   A0A8C0RDI4 (UniProtKB/TrEMBL),   A0A8C0LA42 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845003506   ⟸   ENSCAFT00845004386
RefSeq Acc Id: ENSCAFP00845003555   ⟸   ENSCAFT00845004445
RefSeq Acc Id: ENSCAFP00845003597   ⟸   ENSCAFT00845004499
RefSeq Acc Id: ENSCAFP00845003533   ⟸   ENSCAFT00845004418
RefSeq Acc Id: ENSCAFP00845003518   ⟸   ENSCAFT00845004401
RefSeq Acc Id: ENSCAFP00845003543   ⟸   ENSCAFT00845004432
RefSeq Acc Id: ENSCAFP00845003457   ⟸   ENSCAFT00845004328
Protein Domains
bHLH

Promoters
RGD ID:13681956
Promoter ID:EPDNEW_C26
Type:initiation region
Name:TCF4_1
Description:transcription factor 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1120,060,783 - 20,060,843EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000140 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000051623 UniProtKB/TrEMBL
  ENSCAFG00030005485 UniProtKB/TrEMBL
  ENSCAFG00040008399 UniProtKB/TrEMBL
  ENSCAFG00845002403 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000232.5 UniProtKB/TrEMBL
  ENSCAFT00000048913.4 UniProtKB/TrEMBL
  ENSCAFT00000064769.2 UniProtKB/TrEMBL
  ENSCAFT00000070690.2 UniProtKB/TrEMBL
  ENSCAFT00000072359.2 UniProtKB/TrEMBL
  ENSCAFT00000078297.2 UniProtKB/TrEMBL
  ENSCAFT00000087833.2 UniProtKB/TrEMBL
  ENSCAFT00000093611.2 UniProtKB/TrEMBL
  ENSCAFT00000096050.1 UniProtKB/TrEMBL
  ENSCAFT00000107247.1 UniProtKB/TrEMBL
  ENSCAFT00030010118.1 UniProtKB/TrEMBL
  ENSCAFT00030010421.1 UniProtKB/TrEMBL
  ENSCAFT00030010478.1 UniProtKB/TrEMBL
  ENSCAFT00030010504.1 UniProtKB/TrEMBL
  ENSCAFT00030010573.1 UniProtKB/TrEMBL
  ENSCAFT00030010617.1 UniProtKB/TrEMBL
  ENSCAFT00030010664.1 UniProtKB/TrEMBL
  ENSCAFT00040018772.1 UniProtKB/TrEMBL
  ENSCAFT00040019100.1 UniProtKB/TrEMBL
  ENSCAFT00040019354.1 UniProtKB/TrEMBL
  ENSCAFT00040019400.1 UniProtKB/TrEMBL
  ENSCAFT00040019524.1 UniProtKB/TrEMBL
  ENSCAFT00040019621.1 UniProtKB/TrEMBL
  ENSCAFT00040019689.1 UniProtKB/TrEMBL
  ENSCAFT00845004328.1 UniProtKB/TrEMBL
  ENSCAFT00845004386.1 UniProtKB/TrEMBL
  ENSCAFT00845004401 ENTREZGENE
  ENSCAFT00845004401.1 UniProtKB/TrEMBL
  ENSCAFT00845004418 ENTREZGENE
  ENSCAFT00845004418.1 UniProtKB/TrEMBL
  ENSCAFT00845004432 ENTREZGENE
  ENSCAFT00845004432.1 UniProtKB/TrEMBL
  ENSCAFT00845004445 ENTREZGENE
  ENSCAFT00845004445.1 UniProtKB/TrEMBL
  ENSCAFT00845004499 ENTREZGENE
  ENSCAFT00845004499.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report cfa:403949 UniProtKB/Swiss-Prot
NCBI Gene TCF4 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION FACTOR 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8C0L713 ENTREZGENE
  A0A8C0LA42 ENTREZGENE
  A0A8C0MB93 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MBC9_CANLF UniProtKB/TrEMBL
  A0A8C0MBD0_CANLF UniProtKB/TrEMBL
  A0A8C0MH03_CANLF UniProtKB/TrEMBL
  A0A8C0RDB0_CANLF UniProtKB/TrEMBL
  A0A8C0RDI4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RDK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S5P2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0S7M0_CANLF UniProtKB/TrEMBL
  A0A8C0YUA8_CANLF UniProtKB/TrEMBL
  A0A8I3MFJ0_CANLF UniProtKB/TrEMBL
  A0A8I3MG78 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MG88_CANLF UniProtKB/TrEMBL
  A0A8I3MLT7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MLU4_CANLF UniProtKB/TrEMBL
  A0A8I3MN17_CANLF UniProtKB/TrEMBL
  A0A8I3MPT2_CANLF UniProtKB/TrEMBL
  A0A8P0NYC3_CANLF UniProtKB/TrEMBL
  A0A8P0PRW7_CANLF UniProtKB/TrEMBL
  A0A8P0SX48 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T357 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T7B1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TK74 ENTREZGENE
  A2NV14_CANLF UniProtKB/TrEMBL
  ITF2_CANLF UniProtKB/Swiss-Prot, ENTREZGENE
  Q6JDG3_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0TGK0 UniProtKB/TrEMBL
  A0A8P0TK74 UniProtKB/TrEMBL
VGNC ID VGNC:47197 ENTREZGENE