Symbol:
SCN1B
Name:
sodium voltage-gated channel beta subunit 1
RGD ID:
12317220
Description:
ENCODES a protein that exhibits sodium channel regulator activity (ortholog); INVOLVED IN positive regulation of voltage-gated sodium channel activity (ortholog); regulation of sodium ion transmembrane transport (ortholog); regulation of sodium ion transport (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy 3 (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Brugada syndrome (ortholog); FOUND IN plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog)
Type:
protein-coding
RefSeq Status:
PROVISIONAL
Previously known as:
sodium channel beta-1 subunit; sodium channel regulatory subunit beta-1; sodium channel subunit beta-1; sodium channel, voltage-gated, type I, beta subunit
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Species
Gene symbol and name
Data Source
Assertion derived from
less info ...
Orthologs 1
Homo sapiens (human):
SCN1B (sodium voltage-gated channel beta subunit 1) HGNC
EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):
Scn1b (sodium channel, voltage-gated, type I, beta) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):
Scn1b (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):
Scn1b (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):
SCN1B (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):
Scn1b (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Sus scrofa (pig):
SCN1B (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):
SCN1B (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):
Scn1b (sodium voltage-gated channel beta subunit 1) Transitive Ortholog Pipeline
Transitive Ortholog Pipeline
Latest Assembly:
CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 117,504,428 - 117,510,666 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 1 117,503,828 - 117,511,727 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 116,904,982 - 116,912,817 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 118,101,274 - 118,110,870 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 118,101,277 - 118,109,849 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 117,664,454 - 117,672,298 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 117,289,863 - 117,297,724 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 118,346,453 - 118,354,295 (-) NCBI UU_Cfam_GSD_1.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Imported Annotations - SMPDB
SCN1B Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 1 117,504,428 - 117,510,666 (-) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 1 117,503,828 - 117,511,727 (-) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 1 116,904,982 - 116,912,817 (-) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 1 118,101,274 - 118,110,870 (-) NCBI ROS_Cfam_1.0 ROS_Cfam_1.0 Ensembl 1 118,101,277 - 118,109,849 (-) Ensembl ROS_Cfam_1.0 Ensembl UMICH_Zoey_3.1 1 117,664,454 - 117,672,298 (-) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 1 117,289,863 - 117,297,724 (-) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 1 118,346,453 - 118,354,295 (-) NCBI UU_Cfam_GSD_1.0
SCN1B Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 19 35,030,470 - 35,040,449 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 19 35,030,470 - 35,040,449 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 19 35,521,374 - 35,531,353 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 19 40,213,374 - 40,223,193 (+) NCBI NCBI36 Build 36 hg18 NCBI36 Build 34 19 40,213,373 - 40,217,014 NCBI Celera 19 32,237,030 - 32,244,951 (+) NCBI Celera Cytogenetic Map 19 q13.11 NCBI HuRef 19 32,031,550 - 32,039,386 (+) NCBI HuRef CHM1_1 19 35,523,533 - 35,533,294 (+) NCBI CHM1_1 T2T-CHM13v2.0 19 37,575,088 - 37,585,067 (+) NCBI T2T-CHM13v2.0
Scn1b Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 7 30,815,949 - 30,826,436 (-) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 7 30,815,949 - 30,826,428 (-) Ensembl GRCm39 Ensembl GRCm38 7 31,116,524 - 31,127,023 (-) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 7 31,116,524 - 31,127,003 (-) Ensembl GRCm38 mm10 GRCm38 MGSCv37 7 31,901,543 - 31,911,964 (-) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 7 30,825,284 - 30,835,705 (-) NCBI MGSCv36 mm8 Celera 7 25,685,753 - 25,696,176 (-) NCBI Celera Cytogenetic Map 7 B1 NCBI cM Map 7 19.3 NCBI
Scn1b Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 1 95,481,298 - 95,491,211 (-) NCBI GRCr8 mRatBN7.2 1 86,353,917 - 86,363,820 (-) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 1 86,353,917 - 86,363,739 (-) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 1 91,774,394 - 91,784,282 (-) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 1 100,240,553 - 100,250,441 (-) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 1 93,532,687 - 93,542,575 (-) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 1 89,550,738 - 89,560,469 (-) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 1 89,550,738 - 89,560,719 (-) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 1 90,705,285 - 90,715,016 (-) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 1 86,162,254 - 86,172,128 (-) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 1 86,240,364 - 86,250,239 (-) NCBI Celera 1 80,722,797 - 80,732,619 (-) NCBI Celera Cytogenetic Map 1 q21 NCBI
Scn1b Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955468 4,375,157 - 4,383,502 (+) Ensembl ChiLan1.0 ChiLan1.0 NW_004955468 4,375,517 - 4,383,383 (+) NCBI ChiLan1.0 ChiLan1.0
SCN1B Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 20 41,041,639 - 41,051,647 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 19 43,024,053 - 43,034,048 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 19 31,974,499 - 31,984,488 (+) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 19 40,714,949 - 40,724,052 (+) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 19 40,711,281 - 40,724,052 (+) Ensembl panpan1.1 panPan2
Scn1b Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024409349 10,450,449 - 10,457,966 (+) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936570 1,186,711 - 1,195,388 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936570 1,187,916 - 1,195,423 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
SCN1B Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 6 44,597,482 - 44,607,481 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 6 44,597,461 - 44,607,488 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 6 40,022,785 - 40,032,360 (+) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
SCN1B Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 6 29,962,993 - 29,972,845 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 6 29,962,843 - 29,973,325 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666073 7,732,359 - 7,742,427 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Scn1b
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Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
6
5
5
23
22
16
6
6
6
6
33
22
12
14
10
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSCAFT00000011430 ⟹ ENSCAFP00000010590
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 1 117,504,328 - 117,511,727 (-) Ensembl
Ensembl Acc Id:
ENSCAFT00000068264 ⟹ ENSCAFP00000060302
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 1 117,504,328 - 117,511,727 (-) Ensembl
Ensembl Acc Id:
ENSCAFT00000082522 ⟹ ENSCAFP00000059779
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 Ensembl 1 117,503,828 - 117,510,664 (-) Ensembl
Ensembl Acc Id:
ENSCAFT00845006880 ⟹ ENSCAFP00845005479
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 1 118,101,277 - 118,109,849 (-) Ensembl
Ensembl Acc Id:
ENSCAFT00845006890 ⟹ ENSCAFP00845005487
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 Ensembl 1 118,101,277 - 118,108,951 (-) Ensembl
RefSeq Acc Id:
NM_001025398 ⟹ NP_001020569
RefSeq Status:
PROVISIONAL
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source CanFam3.1 1 117,504,428 - 117,510,666 (-) NCBI Dog10K_Boxer_Tasha 1 116,904,982 - 116,912,817 (-) NCBI ROS_Cfam_1.0 1 118,101,874 - 118,109,714 (-) NCBI UMICH_Zoey_3.1 1 117,664,454 - 117,672,298 (-) NCBI UNSW_CanFamBas_1.0 1 117,289,863 - 117,297,724 (-) NCBI UU_Cfam_GSD_1.0 1 118,346,453 - 118,354,295 (-) NCBI
Sequence:
GCCATGGGGACGCTGCTGGCCCTGGTGGTCGGCGCGGCGCTGGTGTCCTCAGCCTGGGGGGGCTGCGTGGAGGTGGACTCAGAGACCGAGGCCGTGTACGGGATGACCTTCAAAATCCTGTGCATCTC
hide sequence
RefSeq Acc Id:
XM_038653550 ⟹ XP_038509478
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 1 118,101,274 - 118,110,870 (-) NCBI
RefSeq Acc Id:
XM_038653551 ⟹ XP_038509479
Type:
CODING
Position:
Dog Assembly Chr Position (strand) Source ROS_Cfam_1.0 1 118,101,274 - 118,109,349 (-) NCBI
RefSeq Acc Id:
NP_001020569 ⟸ NM_001025398
- Peptide Label:
precursor
- UniProtKB:
Q4PPC4 (UniProtKB/Swiss-Prot), A0A8C0R433 (UniProtKB/TrEMBL), A0A8C0PZ57 (UniProtKB/TrEMBL), A0A8I3MSQ3 (UniProtKB/TrEMBL)
- Sequence:
MGTLLALVVGAALVSSAWGGCVEVDSETEAVYGMTFKILCISCKRRSETTAETFTEWTFRQKGTEEFVKILRYENEVLQLEEDERFEGRVVWNGSRGTKDLQDLSIFITNVTYNHSGDYECHVYRLLF
hide sequence
Ensembl Acc Id:
ENSCAFP00000010590 ⟸ ENSCAFT00000011430
Ensembl Acc Id:
ENSCAFP00000060302 ⟸ ENSCAFT00000068264
Ensembl Acc Id:
ENSCAFP00000059779 ⟸ ENSCAFT00000082522
RefSeq Acc Id:
XP_038509478 ⟸ XM_038653550
- Peptide Label:
isoform X1
- UniProtKB:
A0A8C0PZ57 (UniProtKB/TrEMBL), A0A8I3MSQ3 (UniProtKB/TrEMBL)
RefSeq Acc Id:
XP_038509479 ⟸ XM_038653551
- Peptide Label:
isoform X2
- UniProtKB:
A0A8C0PZ57 (UniProtKB/TrEMBL), A0A8I3MSQ3 (UniProtKB/TrEMBL)
Ensembl Acc Id:
ENSCAFP00845005479 ⟸ ENSCAFT00845006880
Ensembl Acc Id:
ENSCAFP00845005487 ⟸ ENSCAFT00845006890
