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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:alpha-amino-acid cation
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Accession:CHEBI:33719 term browser browse the term
Synonyms:related_synonym: alpha-amino acid cations
 cyclic_relationship: is_conjugate_acid_of CHEBI:33704


show annotations for term's descendants           Sort by:
L-proline betaine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts4 ADAM metallopeptidase with thrombospondin type 1 motif 4 multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased secretion of ADAMTS4 protein] CTD PMID:32417162 NCBI chr 1:171,077,698...171,089,836
Ensembl chr 1:171,077,990...171,088,206 		JBrowse link
G Adamts5 ADAM metallopeptidase with thrombospondin type 1 motif 5 multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased secretion of ADAMTS5 protein] CTD PMID:32417162 NCBI chr16:85,655,045...85,698,013
Ensembl chr16:85,653,061...85,698,716 		JBrowse link
G Il1b interleukin 1 beta multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased expression of NOS2 protein]; stachydrine inhibits the reaction [IL1B protein results in increased expression of PTGS2 protein]; stachydrine inhibits the reaction [IL1B protein results in increased phosphorylation of NFKBIA protein]; stachydrine inhibits the reaction [IL1B protein results in increased phosphorylation of RELA protein]; stachydrine inhibits the reaction [IL1B protein results in increased secretion of ADAMTS4 protein]; stachydrine inhibits the reaction [IL1B protein results in increased secretion of ADAMTS5 protein]; stachydrine inhibits the reaction [IL1B protein results in increased secretion of IL6 protein]; stachydrine inhibits the reaction [IL1B protein results in increased secretion of MMP13 protein]; stachydrine inhibits the reaction [IL1B protein results in increased secretion of MMP3 protein]; stachydrine inhibits the reaction [IL1B protein results in increased secretion of TNF protein] CTD PMID:32417162 NCBI chr 2:129,206,490...129,213,059
Ensembl chr 2:129,206,490...129,213,059 		JBrowse link
G Il6 interleukin 6 multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased secretion of IL6 protein] CTD PMID:32417162 NCBI chr 5:30,218,112...30,224,973
Ensembl chr 5:30,218,112...30,224,979 		JBrowse link
G Mmp13 matrix metallopeptidase 13 multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased secretion of MMP13 protein] CTD PMID:32417162 NCBI chr 9:7,272,514...7,283,333
Ensembl chr 9:7,272,514...7,283,331 		JBrowse link
G Mmp3 matrix metallopeptidase 3 multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased secretion of MMP3 protein] CTD PMID:32417162 NCBI chr 9:7,445,845...7,455,975
Ensembl chr 9:7,445,822...7,455,975 		JBrowse link
G Nfkbia nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased phosphorylation of NFKBIA protein] CTD PMID:32417162 NCBI chr12:55,536,194...55,539,432
Ensembl chr12:55,536,195...55,539,432 		JBrowse link
G Nos2 nitric oxide synthase 2, inducible multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased expression of NOS2 protein] CTD PMID:32417162 NCBI chr11:78,811,613...78,851,052
Ensembl chr11:78,811,613...78,851,080 		JBrowse link
G Ptgs2 prostaglandin-endoperoxide synthase 2 multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased expression of PTGS2 protein] CTD PMID:32417162 NCBI chr 1:149,975,851...149,983,978
Ensembl chr 1:149,975,782...149,983,978 		JBrowse link
G Rela v-rel reticuloendotheliosis viral oncogene homolog A (avian) multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased phosphorylation of RELA protein] CTD PMID:32417162 NCBI chr19:5,686,993...5,698,162
Ensembl chr19:5,687,511...5,698,158 		JBrowse link
G Tnf tumor necrosis factor multiple interactions ISO stachydrine inhibits the reaction [IL1B protein results in increased secretion of TNF protein] CTD PMID:32417162 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 22210
    chemical entity 22209
      molecular entity 22201
        ion 17699
          cation 17500
            organic cation 9100
              amino-acid cation 11
                alpha-amino-acid cation 11
                  (2R,4S)-2,4-diazaniumylpentanoate 0
                  (2R,5S)-2,5-diammoniohexanoate 0
                  (2S,3R)-capreomycidine(1+) 0
                  (3S)-3-hydroxy-L-arginine(1+) 0
                  (3S)-3-hydroxy-L-enduracididine(1+) 0
                  (3S)-3-hydroxy-L-lysine(1+) + 0
                  (3S)-3-hydroxy-L-ornithine(1+) 0
                  (4-\{4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl\}furan-2-yl)methanamine(1+) 0
                  (4R)-4-hydroxy-L-lysine(1+) 0
                  1-carboxyheptan-1-aminium 0
                  3-(3,4-dioxidopyridinium-1-yl)-L-alanine(1-) 0
                  3-ammonio-L-alanine 0
                  3-ammonio-L-alanine(1+) 0
                  3-hydroxy-N(6),N(6),N(6)-trimethyl-L-lysine zwitterion + 0
                  4-chloro-L-lysinium 0
                  4-hydroxy-L-lysine(1+) + 0
                  5-hydroxylysinium 0
                  L-2,4-diazaniumylbutyrate 0
                  L-canavanine(1+) + 0
                  L-enduracididine(1+) 0
                  L-pyrrolysinium + 0
                  N(5)-[(hydroxyamino)(imino)methyl]-L-ornithinium(1+) 0
                  N(6),N(6),N(6)-trimethyl-L-lysine + 0
                  N(6),N(6),N(6)-trimethyl-L-lysine zwitterion + 0
                  N(6)-acetimidoyl-L-lysinium(2+) + 0
                  N(6)-methyl-L-lysinium(1+) 0
                  Se-methyl-L-selenomethionine(1+) 0
                  Se-methylselenocysteinium + 0
                  Se-methylselenomethionine + 0
                  alaninium + 0
                  alpha-amino-acid radical cation + 0
                  argininium(1+) + 0
                  argininium(2+) + 0
                  asparaginium + 0
                  carboxynorspermidine(2+) 0
                  carboxyspermidine(2+) 0
                  cyclo(L-arginyl-(Z)-dehydro-3,4-dihydroxytyrosyl) 0
                  cyclo(L-arginyl-L-dehydrotyrosyl)(+1) + 0
                  cyclo(L-arginyl-L-tyrosyl)(+1) 0
                  cysteinium + 0
                  dimethylargininium(1+) + 0
                  ergothioneine(1+) 0
                  erythro-5-hydroxy-L-lysinium(1+) 0
                  glutaminium + 0
                  glycinium + 0
                  histidinium(1+) + 0
                  histidinium(2+) + 0
                  isoleucinium + 0
                  leucinium + 0
                  lysinium(1+) + 0
                  lysinium(2+) + 0
                  methioninium + 0
                  ornithinium(1+) + 0
                  ornithinium(2+) + 0
                  phenylalaninium + 0
                  prolinium + 11
                  sarcosinium 0
                  selenocysteinium + 0
                  serinium + 0
                  threoninium + 0
                  tryptophanium + 0
                  tyrosinium + 0
                  valinium + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 22210
    subatomic particle 22202
      composite particle 22202
        hadron 22202
          baryon 22202
            nucleon 22202
              atomic nucleus 22202
                atom 22202
                  main group element atom 22136
                    p-block element atom 22136
                      carbon group element atom 21936
                        carbon group molecular entity 21936
                          organic molecular entity 21861
                            organic ion 10082
                              organic cation 9100
                                amino-acid cation 11
                                  alpha-amino-acid cation 11
                                    (2R,4S)-2,4-diazaniumylpentanoate 0
                                    (2R,5S)-2,5-diammoniohexanoate 0
                                    (2S,3R)-capreomycidine(1+) 0
                                    (3S)-3-hydroxy-L-arginine(1+) 0
                                    (3S)-3-hydroxy-L-enduracididine(1+) 0
                                    (3S)-3-hydroxy-L-lysine(1+) + 0
                                    (3S)-3-hydroxy-L-ornithine(1+) 0
                                    (4-\{4-[2-(gamma-L-glutamylamino)ethyl]phenoxymethyl\}furan-2-yl)methanamine(1+) 0
                                    (4R)-4-hydroxy-L-lysine(1+) 0
                                    1-carboxyheptan-1-aminium 0
                                    3-(3,4-dioxidopyridinium-1-yl)-L-alanine(1-) 0
                                    3-ammonio-L-alanine 0
                                    3-ammonio-L-alanine(1+) 0
                                    3-hydroxy-N(6),N(6),N(6)-trimethyl-L-lysine zwitterion + 0
                                    4-chloro-L-lysinium 0
                                    4-hydroxy-L-lysine(1+) + 0
                                    5-hydroxylysinium 0
                                    L-2,4-diazaniumylbutyrate 0
                                    L-canavanine(1+) + 0
                                    L-enduracididine(1+) 0
                                    L-pyrrolysinium + 0
                                    N(5)-[(hydroxyamino)(imino)methyl]-L-ornithinium(1+) 0
                                    N(6),N(6),N(6)-trimethyl-L-lysine + 0
                                    N(6),N(6),N(6)-trimethyl-L-lysine zwitterion + 0
                                    N(6)-acetimidoyl-L-lysinium(2+) + 0
                                    N(6)-methyl-L-lysinium(1+) 0
                                    Se-methyl-L-selenomethionine(1+) 0
                                    Se-methylselenocysteinium + 0
                                    Se-methylselenomethionine + 0
                                    alaninium + 0
                                    alpha-amino-acid radical cation + 0
                                    argininium(1+) + 0
                                    argininium(2+) + 0
                                    asparaginium + 0
                                    carboxynorspermidine(2+) 0
                                    carboxyspermidine(2+) 0
                                    cyclo(L-arginyl-(Z)-dehydro-3,4-dihydroxytyrosyl) 0
                                    cyclo(L-arginyl-L-dehydrotyrosyl)(+1) + 0
                                    cyclo(L-arginyl-L-tyrosyl)(+1) 0
                                    cysteinium + 0
                                    dimethylargininium(1+) + 0
                                    ergothioneine(1+) 0
                                    erythro-5-hydroxy-L-lysinium(1+) 0
                                    glutaminium + 0
                                    glycinium + 0
                                    histidinium(1+) + 0
                                    histidinium(2+) + 0
                                    isoleucinium + 0
                                    leucinium + 0
                                    lysinium(1+) + 0
                                    lysinium(2+) + 0
                                    methioninium + 0
                                    ornithinium(1+) + 0
                                    ornithinium(2+) + 0
                                    phenylalaninium + 0
                                    prolinium + 11
                                    sarcosinium 0
                                    selenocysteinium + 0
                                    serinium + 0
                                    threoninium + 0
                                    tryptophanium + 0
                                    tyrosinium + 0
                                    valinium + 0
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