Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:transcription-coupled nucleotide-excision repair
go back to main search page
Accession:GO:0006283 term browser browse the term
Definition:The nucleotide-excision repair process that carries out preferential repair of DNA lesions on the actively transcribed strand of the DNA duplex. In addition, the transcription-coupled nucleotide-excision repair pathway is required for the recognition and repair of a small subset of lesions that are not recognized by the global genome nucleotide excision repair pathway.
Synonyms:exact_synonym: TC-NER;   transcription-coupled NER;   transcription-coupled repair
 related_synonym: TCR

Please select species to view GViewer data.

show annotations for term's descendants           Sort by:
transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) UniProt PMID:8663148 NCBI chrNW_004624907:2,249,323...2,263,999
Ensembl chrNW_004624907:2,250,133...2,263,947 		JBrowse link
G G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G P ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,734,318...51,757,508
Ensembl chr 6:51,734,320...51,757,553 		JBrowse link
G S Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,816,561...1,829,638
Ensembl chrNW_004936706:1,816,571...1,829,692 		JBrowse link
G D ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,173,781...110,191,612
Ensembl chr 1:110,173,715...110,190,125 		JBrowse link
G B ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:42,298,927...42,319,816
Ensembl chr19:50,897,004...50,915,819 		JBrowse link
G C Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) UniProt PMID:8663148 NCBI chrNW_004955555:2,355,005...2,369,599
Ensembl chrNW_004955555:2,355,005...2,369,599 		JBrowse link
G R Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) RGD PMID:8663148 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G M Ercc2 excision repair cross-complementing rodent repair deficiency, complementation group 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:19,115,942...19,129,619
Ensembl chr 7:19,115,935...19,129,619 		JBrowse link
G H ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in TAS
IDA		 (PMID:8663148) Reactome
UniProt		 PMID:8663148 Reactome:R-HSA-6781827 NCBI chr19:45,349,837...45,370,573
Ensembl chr19:45,349,837...45,370,918 		JBrowse link
G N Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) UniProt PMID:8663148 NCBI chrNW_004624732:13,730,648...13,776,886
Ensembl chrNW_004624732:13,729,947...13,776,870 		JBrowse link
G G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:2,926,410...2,963,802
Ensembl chr10:2,926,350...2,963,823 		JBrowse link
G P ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:25,189,644...25,224,381
Ensembl chr15:25,189,663...25,228,066 		JBrowse link
G S Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:43,970,002...43,998,279
Ensembl chrNW_004936469:43,969,740...43,998,448 		JBrowse link
G D ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:23,310,911...23,344,083
Ensembl chr19:23,310,986...23,337,683 		JBrowse link
G B ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:32,983,492...33,020,492
Ensembl chr2B:127,922,483...127,959,372 		JBrowse link
G C Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) UniProt PMID:8663148 NCBI chrNW_004955459:3,210,936...3,238,401
Ensembl chrNW_004955459:3,210,479...3,242,576 		JBrowse link
G R Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in ISO (PMID:8663148) RGD PMID:8663148 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G M Ercc3 excision repair cross-complementing rodent repair deficiency, complementation group 3 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:32,373,357...32,403,206
Ensembl chr18:32,373,353...32,403,204 		JBrowse link
G H ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit involved_in IDA
TAS		 (PMID:8663148) UniProt
Reactome		 PMID:8663148 Reactome:R-HSA-6781827 NCBI chr 2:127,257,290...127,294,144
Ensembl chr 2:127,257,290...127,294,166 		JBrowse link
G N Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chrNW_004624793:8,632,581...8,657,514
Ensembl chrNW_004624793:8,632,471...8,657,346 		JBrowse link
G G ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chr 3:81,406,103...81,441,422
Ensembl chr 3:81,405,872...81,436,040 		JBrowse link
G P ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chr11:71,141,823...71,168,326
Ensembl chr11:71,141,842...71,168,322 		JBrowse link
G S Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chrNW_004936472:8,209,482...8,234,696
Ensembl chrNW_004936472:8,209,540...8,234,334 		JBrowse link
G D ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chr22:52,339,011...52,372,618 JBrowse link
G B ERCC5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chr13:84,005,950...84,036,710
Ensembl chr13:103,096,344...103,174,182 		JBrowse link
G C Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) UniProt PMID:16246722 NCBI chrNW_004955404:8,294,506...8,321,505
Ensembl chrNW_004955404:8,294,346...8,321,112 		JBrowse link
G R Ercc5 ERCC excision repair 5, endonuclease involved_in ISO (PMID:16246722) RGD PMID:16246722 NCBI chr 9:46,309,477...46,354,478
Ensembl chr 9:46,309,389...46,354,472 		JBrowse link
G M Ercc5 excision repair cross-complementing rodent repair deficiency, complementation group 5 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:44,184,084...44,220,399
Ensembl chr 1:44,186,904...44,220,420 		JBrowse link
G H ERCC5 ERCC excision repair 5, endonuclease involved_in TAS
IMP		 (PMID:16246722) Reactome
UniProt		 PMID:16246722 Reactome:R-HSA-6781827 NCBI chr13:102,846,032...102,875,995
Ensembl chr13:102,845,831...102,875,995 		JBrowse link
G N Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12509265), (PMID:9150142) RGD
MGI
TreeGrafter
Ensembl		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000107 GO_REF:0000118 RGD:126925983 NCBI chrNW_004624928:458,651...532,201
Ensembl chrNW_004624928:463,279...530,115 		JBrowse link
G P ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:12509265), (PMID:9150142) RGD
MGI
GO_Central
TreeGrafter		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000033 GO_REF:0000118 RGD:126925983 NCBI chr14:89,998,125...90,075,911
Ensembl chr14:90,002,024...90,075,898 		JBrowse link
G S Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12509265), (PMID:9150142) RGD
MGI
TreeGrafter
Ensembl		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000107 GO_REF:0000118 RGD:126925983 NCBI chrNW_004936728:706,499...843,447
Ensembl chrNW_004936728:761,804...844,690 		JBrowse link
G D ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12509265), (PMID:9150142) RGD
MGI
TreeGrafter
Ensembl		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000107 GO_REF:0000118 RGD:126925983 NCBI chr28:1,358,383...1,432,276
Ensembl chr28:1,361,107...1,427,162 		JBrowse link
G B ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12509265), (PMID:9150142) RGD
MGI
TreeGrafter
Ensembl		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000107 GO_REF:0000118 RGD:126925983 NCBI chr10:44,703,720...44,784,948 JBrowse link
G C Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO (PMID:12509265), (PMID:9150142)
(PMID:10564257), (PMID:26620705)		 RGD
MGI
UniProt		 PMID:9150142 PMID:10564257 PMID:12509265 PMID:26620705 PMID:31644904 RGD:126925983 NCBI chrNW_004955556:745,175...812,215
Ensembl chrNW_004955556:748,231...813,133 		JBrowse link
G R Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 IMP
ISO
IBA		 MGI:1932102 (PMID:12509265), (PMID:9150142)
GO_REF:0000033
(PMID:10564257), (PMID:26620705)		 RGD
GO_Central		 PMID:9150142 PMID:10564257 PMID:12509265 PMID:26620705 PMID:31644904 GO_REF:0000033, RGD:126925983 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G M Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 involved_in
acts_upstream_of_or_within		 ISO
IBA
IMP		 (PMID:12509265), (PMID:9150142) RGD
GO_Central
MGI		 PMID:9150142 PMID:12509265 PMID:31644904 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:126925983 NCBI chr14:32,235,248...32,302,947
Ensembl chr14:32,235,478...32,302,947 		JBrowse link
G H ERCC6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA
IMP		 (PMID:12509265), (PMID:9150142)
(PMID:10564257), (PMID:26620705)		 RGD
MGI
GO_Central
TreeGrafter
UniProt
Ensembl		 PMID:9150142 PMID:10564257 PMID:12509265 PMID:26620705 PMID:31644904 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:126925983 NCBI chr10:49,434,881...49,539,538
Ensembl chr10:49,454,168...49,539,538 		JBrowse link
G N Ercc6l ERCC excision repair 6 like, spindle assembly checkpoint helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624903:2,447,723...2,468,624
Ensembl chrNW_004624903:2,444,689...2,468,628 		JBrowse link
G G ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:62,013,003...62,061,669 JBrowse link
G P ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:58,087,216...58,117,942
Ensembl chr  X:58,087,169...58,117,947 		JBrowse link
G D ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:56,239,820...56,260,384
Ensembl chr  X:56,239,850...56,260,759 		JBrowse link
G B ERCC6L ERCC excision repair 6 like, spindle assembly checkpoint helicase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:61,441,350...61,476,267
Ensembl chr  X:71,526,160...71,560,091 		JBrowse link
G N Ercc6l2 ERCC excision repair 6 like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624753:17,393,629...17,547,793 JBrowse link
G G ERCC6L2 ERCC excision repair 6 like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:107,095,221...107,224,532
Ensembl chr12:107,095,952...107,224,197 		JBrowse link
G P ERCC6L2 ERCC excision repair 6 like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:26,112,019...26,264,759
Ensembl chr10:26,112,028...26,241,148 		JBrowse link
G D ERCC6L2 ERCC excision repair 6 like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:70,793,975...70,918,151
Ensembl chr 1:70,835,410...70,917,962 		JBrowse link
G B ERCC6L2 ERCC excision repair 6 like 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:66,967,399...67,153,934
Ensembl chr 9:95,092,512...95,183,122 		JBrowse link
G N Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12732143) MGI
TreeGrafter
InterPro		 PMID:12732143 GO_REF:0000002 GO_REF:0000118 NCBI chrNW_004624815:9,054,576...9,135,136
Ensembl chrNW_004624815:9,054,651...9,134,286 		JBrowse link
G G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12732143) MGI
TreeGrafter
Ensembl
InterPro		 PMID:12732143 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G P ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:12732143) MGI
GO_Central
TreeGrafter
Ensembl
InterPro		 PMID:12732143 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,702...39,770,315 		JBrowse link
G S Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12732143) MGI
TreeGrafter
Ensembl
InterPro		 PMID:12732143 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G D ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12732143) MGI
TreeGrafter
Ensembl
InterPro		 PMID:12732143 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889 		JBrowse link
G B ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:12732143) MGI
TreeGrafter
InterPro
Ensembl		 PMID:12732143 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496 		JBrowse link
G R Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit acts_upstream_of_or_within
involved_in		 ISO
IBA		 (PMID:12732143)
GO_REF:0000033		 RGD
GO_Central		 PMID:12732143 GO_REF:0000033 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859 		JBrowse link
G M Ercc8 excision repaiross-complementing rodent repair deficiency, complementation group 8 acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000008 GO_REF:0000033 NCBI chr13:108,295,246...108,337,738
Ensembl chr13:108,295,265...108,331,898 		JBrowse link
G H ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in
acts_upstream_of_or_within		 IEA
IBA
IDA		 (PMID:12732143) InterPro
GO_Central
TreeGrafter
MGI		 PMID:12732143 GO_REF:0000002 GO_REF:0000033 GO_REF:0000118 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073 		JBrowse link
G N Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chrNW_004624745:24,659,391...24,665,874
Ensembl chrNW_004624745:24,659,334...24,665,221 		JBrowse link
G G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chr 2:83,296,811...83,303,581 JBrowse link
G P HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chr13:202,936,313...202,943,496
Ensembl chr13:202,905,233...202,943,575 		JBrowse link
G S Hmgn1 high mobility group nucleosome binding domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12660172) Ensembl
MGI		 PMID:12660172 GO_REF:0000107 NCBI chrNW_004936500:3,845,320...3,852,000
Ensembl chrNW_004936500:3,847,517...3,852,039 		JBrowse link
G D HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chr31:34,275,400...34,283,373
Ensembl chr31:34,275,839...34,282,340 		JBrowse link
G B HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chr21:25,695,582...25,702,689 JBrowse link
G C Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:12660172) MGI PMID:12660172 NCBI chrNW_004955407:38,136,386...38,142,587
Ensembl chrNW_004955407:38,136,386...38,143,479 		JBrowse link
G R Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (PMID:12660172) RGD PMID:12660172 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254 		JBrowse link
G M Hmgn1 high mobility group nucleosomal binding domain 1 acts_upstream_of_or_within IMP (PMID:12660172) MGI PMID:12660172 NCBI chr16:95,922,788...95,928,925
Ensembl chr16:95,921,818...95,928,929 		JBrowse link
G H HMGN1 high mobility group nucleosome binding domain 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12660172) Ensembl
MGI		 PMID:12660172 GO_REF:0000107 NCBI chr21:39,342,315...39,349,088
Ensembl chr21:39,342,315...39,349,647 		JBrowse link
G G LOC103215829 DNA excision repair protein ERCC-6 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:42,288,702...42,370,045
Ensembl chr 9:42,288,825...42,373,906 		JBrowse link
G N Polr2i RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624794:10,359,984...10,361,472
Ensembl chrNW_004624794:10,359,984...10,361,826 		JBrowse link
G G POLR2I RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:31,020,107...31,021,717
Ensembl chr 6:31,020,151...31,021,237 		JBrowse link
G P POLR2I RNA polymerase II subunit I involved_in IBA
IEA		 GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:45,480,785...45,482,318
Ensembl chr 6:45,479,555...45,481,990 		JBrowse link
G S Polr2i RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936922:130,248...131,843
Ensembl chrNW_004936922:130,257...131,828 		JBrowse link
G D POLR2I RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:116,586,022...116,587,551
Ensembl chr 1:116,586,329...116,587,550 		JBrowse link
G B POLR2I RNA polymerase II subunit I involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:33,032,989...33,034,628
Ensembl chr19:41,780,125...41,781,764 		JBrowse link
G R Polr2i RNA polymerase II subunit I involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952 		JBrowse link
G M Polr2i polymerase (RNA) II (DNA directed) polypeptide I involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:29,931,499...29,932,812
Ensembl chr 7:29,931,373...29,932,815 		JBrowse link
G H POLR2I RNA polymerase II subunit I involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:36,113,709...36,114,875
Ensembl chr19:36,113,709...36,115,213 		JBrowse link
G N Rad54b RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624763:1,773,943...1,878,032
Ensembl chrNW_004624763:1,773,725...1,878,641 		JBrowse link
G G RAD54B RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:89,351,203...89,450,047
Ensembl chr 8:89,351,415...89,442,825 		JBrowse link
G P RAD54B RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:42,249,482...42,369,408
Ensembl chr 4:42,266,605...42,369,447 		JBrowse link
G S Rad54b RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936544:7,375,566...7,475,319
Ensembl chrNW_004936544:7,373,508...7,475,353 		JBrowse link
G D RAD54B RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:39,096,680...39,195,054
Ensembl chr29:39,098,098...39,195,112 		JBrowse link
G B RAD54B RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:90,995,229...91,098,149
Ensembl chr 8:92,939,535...93,034,060 		JBrowse link
G H RAD54B RAD54 homolog B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:94,371,960...94,475,115
Ensembl chr 8:94,371,960...94,475,115 		JBrowse link
G N Rad54l RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624906:2,164,711...2,194,262
Ensembl chrNW_004624906:2,165,780...2,193,764 		JBrowse link
G G RAD54L RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:86,510,616...86,542,426
Ensembl chr20:86,507,248...86,542,663 		JBrowse link
G P RAD54L RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:165,156,833...165,184,641
Ensembl chr 6:165,152,978...165,184,776 		JBrowse link
G S Rad54l RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936474:27,276,570...27,316,427
Ensembl chrNW_004936474:27,280,573...27,316,428 		JBrowse link
G D RAD54L RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:14,111,168...14,139,819
Ensembl chr15:14,111,157...14,139,301 		JBrowse link
G B RAD54L RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:45,549,586...45,581,711
Ensembl chr 1:46,905,598...46,936,259 		JBrowse link
G H RAD54L RAD54 like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:46,247,688...46,278,473
Ensembl chr 1:46,246,461...46,278,480 		JBrowse link
G N Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:22466612) UniProt PMID:22466612 NCBI chrNW_004624824:6,277,111...6,338,051
Ensembl chrNW_004624824:6,276,354...6,338,227 		JBrowse link
G G USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:8,470,137...8,540,736
Ensembl chr 5:8,469,230...8,540,770 		JBrowse link
G P USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,754,357...33,810,480
Ensembl chr 3:33,775,829...33,810,465 		JBrowse link
G S Usp7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936530:7,693,681...7,724,215
Ensembl chrNW_004936530:7,694,379...7,724,684 		JBrowse link
G D USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,277,328...33,315,601
Ensembl chr 6:33,277,444...33,314,491 		JBrowse link
G B USP7 ubiquitin specific peptidase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:7,825,332...7,895,095
Ensembl chr16:9,065,858...9,106,146 		JBrowse link
G C Usp7 ubiquitin specific peptidase 7 involved_in ISO (PMID:22466612) UniProt PMID:22466612 NCBI chrNW_004955442:9,316,022...9,355,751
Ensembl chrNW_004955442:9,315,225...9,356,393 		JBrowse link
G R Usp7 ubiquitin specific peptidase 7 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:22466612)		 UniProt
Ensembl
RGD		 PMID:22466612 GO_REF:0000024 GO_REF:0000107 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
G M Usp7 ubiquitin specific peptidase 7 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:8,506,586...8,574,931
Ensembl chr16:8,507,459...8,610,172 		JBrowse link
G H USP7 ubiquitin specific peptidase 7 involved_in IMP (PMID:22466612) UniProt PMID:22466612 NCBI chr16:8,892,097...8,963,906
Ensembl chr16:8,892,097...8,975,328 		JBrowse link
G N Uvssa UV stimulated scaffold protein A involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624755:25,904,273...25,930,564
Ensembl chrNW_004624755:25,903,377...25,930,043 		JBrowse link
G G UVSSA UV stimulated scaffold protein A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr27:47,378,310...47,418,861
Ensembl chr27:47,378,770...47,417,559 		JBrowse link
G P UVSSA UV stimulated scaffold protein A involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:573,299...602,617
Ensembl chr 8:573,426...601,944 		JBrowse link
G S Uvssa UV stimulated scaffold protein A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936477:21,918,091...21,950,895
Ensembl chrNW_004936477:21,918,062...21,950,904 		JBrowse link
G D UVSSA UV stimulated scaffold protein A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:62,647,992...62,674,830
Ensembl chr 3:62,649,207...62,674,884 		JBrowse link
G B UVSSA UV stimulated scaffold protein A involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:1,492,716...1,532,114
Ensembl chr 4:1,373,562...1,413,982 		JBrowse link
G C Uvssa UV stimulated scaffold protein A involved_in ISO (PMID:22466610), (PMID:22466611), (PMID:22466612) UniProt PMID:22466610 PMID:22466611 PMID:22466612 NCBI chrNW_004955514:725,257...754,274
Ensembl chrNW_004955514:728,522...756,348 		JBrowse link
G R Uvssa UV-stimulated scaffold protein A involved_in ISO
IBA
IEA
ISS		 (PMID:22466610), (PMID:22466611), (PMID:22466612)
GO_REF:0000033
GO_REF:0000107
GO_REF:0000024		 RGD
GO_Central
Ensembl
UniProt		 PMID:22466610 PMID:22466611 PMID:22466612 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:77,309,188...77,351,922
Ensembl chr14:77,314,056...77,351,903 		JBrowse link
G M Uvssa UV stimulated scaffold protein A involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 5:33,535,868...33,578,243
Ensembl chr 5:33,535,893...33,577,098 		JBrowse link
G H UVSSA UV stimulated scaffold protein A involved_in IMP
IEA
IBA		 (PMID:22466610), (PMID:22466611), (PMID:22466612) UniProt
TreeGrafter
GO_Central		 PMID:22466610 PMID:22466611 PMID:22466612 GO_REF:0000033 GO_REF:0000118 NCBI chr 4:1,342,011...1,395,989
Ensembl chr 4:1,345,691...1,395,989 		JBrowse link
G N Xab2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624828:704,400...711,963
Ensembl chrNW_004624828:704,300...712,251 		JBrowse link
G G XAB2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,105,353...7,116,063
Ensembl chr 6:7,104,785...7,116,020 		JBrowse link
G P XAB2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,521,034...71,530,468
Ensembl chr 2:71,521,081...71,530,929 		JBrowse link
G S Xab2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:4,670,866...4,679,888
Ensembl chrNW_004936588:4,670,841...4,679,965 		JBrowse link
G D XAB2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:52,392,521...52,406,071
Ensembl chr20:52,392,566...52,405,997 		JBrowse link
G B XAB2 XPA binding protein 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:6,909,281...6,919,332
Ensembl chr19:7,764,264...7,774,305 		JBrowse link
G C Xab2 XPA binding protein 2 involved_in ISO (PMID:10944529) UniProt PMID:10944529 NCBI chrNW_004955563:1,630,403...1,638,333
Ensembl chrNW_004955563:1,630,403...1,641,037 		JBrowse link
G R Xab2 XPA binding protein 2 involved_in ISO
IEA
ISS		 (PMID:10944529)
GO_REF:0000107		 RGD
Ensembl		 PMID:10944529 PMID:10944529 GO_REF:0000107, RGD:8554289 NCBI chr12:1,667,672...1,679,702
Ensembl chr12:1,667,672...1,679,692 		JBrowse link
G M Xab2 XPA binding protein 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:3,660,089...3,671,311
Ensembl chr 8:3,658,421...3,671,316 		JBrowse link
G H XAB2 XPA binding protein 2 involved_in IDA (PMID:10944529) UniProt PMID:10944529 NCBI chr19:7,619,525...7,629,545
Ensembl chr19:7,619,525...7,629,545 		JBrowse link
regulation of transcription-coupled nucleotide-excision repair term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:16916636), (PMID:17297471) UniProt PMID:16916636 PMID:17297471 NCBI chrNW_004624815:9,054,576...9,135,136
Ensembl chrNW_004624815:9,054,651...9,134,286 		JBrowse link
G G ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:57,048,262...57,128,338
Ensembl chr 4:57,045,018...57,128,307 		JBrowse link
G P ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:39,704,602...39,770,330
Ensembl chr16:39,701,702...39,770,315 		JBrowse link
G S Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:7,560,055...7,609,650
Ensembl chrNW_004936480:7,560,023...7,609,648 		JBrowse link
G D ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:47,502,777...47,559,012
Ensembl chr 2:47,503,762...47,558,889 		JBrowse link
G B ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:53,053,712...53,131,563
Ensembl chr 5:54,693,987...54,765,496 		JBrowse link
G R Ercc8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in ISO (PMID:16916636), (PMID:17297471) RGD PMID:16916636 PMID:17297471 NCBI chr 2:39,647,393...39,686,229
Ensembl chr 2:39,647,452...39,684,859 		JBrowse link
G M Ercc8 excision repaiross-complementing rodent repair deficiency, complementation group 8 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:108,295,246...108,337,738
Ensembl chr13:108,295,265...108,331,898 		JBrowse link
G H ERCC8 ERCC excision repair 8, CSA ubiquitin ligase complex subunit involved_in IMP (PMID:16916636), (PMID:17297471) UniProt PMID:16916636 PMID:17297471 NCBI chr 5:60,866,454...60,945,070
Ensembl chr 5:60,866,454...60,945,073 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 180413
    response to stimulus 91575
      response to stress 39705
        cellular response to stress 19307
          DNA damage response 8357
            DNA repair 5254
              nucleotide-excision repair 616
                transcription-coupled nucleotide-excision repair 122
                  regulation of transcription-coupled nucleotide-excision repair 9
                  transcription-coupled nucleotide-excision repair, DNA damage recognition 0
Path 2
Term Annotations click to browse term
  biological_process 180413
    metabolic process 103361
      organic substance metabolic process 99029
        organic cyclic compound metabolic process 55897
          nucleobase-containing compound metabolic process 51248
            nucleic acid metabolic process 46134
              DNA metabolic process 9115
                DNA repair 5254
                  nucleotide-excision repair 616
                    transcription-coupled nucleotide-excision repair 122
                      regulation of transcription-coupled nucleotide-excision repair 9
                      transcription-coupled nucleotide-excision repair, DNA damage recognition 0
paths to the root