Hmgn1 (high mobility group nucleosome binding domain 1)

Gene: Hmgn1 (high mobility group nucleosome binding domain 1) Chinchilla lanigera

Analyze

Symbol:

Hmgn1

Name:

high mobility group nucleosome binding domain 1

RGD ID:

8721316

Description:

ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN chromatin organization (ortholog); post-embryonic camera-type eye morphogenesis (ortholog); pyrimidine dimer repair by nucleotide-excision repair (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neoplastic Cell Transformation (ortholog); FOUND IN female germ cell nucleus (ortholog); nucleoplasm (ortholog); nucleus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

non-histone chromosomal protein HMG-14

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

NCBI Annotation Information:

Annotation category: partial on reference assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	38,136,386 - 38,143,479 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	38,136,386 - 38,142,587 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

genetic disease (ISO)

Neoplastic Cell Transformation (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (ISO)

post-embryonic camera-type eye morphogenesis (ISO)

pyrimidine dimer repair by nucleotide-excision repair (ISO)

regulation of development, heterochronic (ISO)

regulation of epithelial cell proliferation (ISO)

regulation of transcription by RNA polymerase II (ISO)

response to UV-B (ISO)

response to UV-C (ISO)

transcription-coupled nucleotide-excision repair (ISO)

Cellular Component

female germ cell nucleus (ISO)

nucleoplasm (ISO)

nucleus (ISO)

Molecular Function

chromatin binding (ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

nucleotide excision repair pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Hmgn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	38,136,386 - 38,143,479 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	38,136,386 - 38,142,587 (-)	NCBI	ChiLan1.0	ChiLan1.0

HMGN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	39,342,315 - 39,349,088 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	39,342,315 - 39,349,647 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	40,714,241 - 40,721,014 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	39,636,111 - 39,642,917 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	39,636,111 - 39,642,917	NCBI
Celera	21	25,911,870 - 25,918,680 (-)	NCBI		Celera
Cytogenetic Map	21	q22.2	ENTREZGENE
HuRef	21	26,182,661 - 26,189,471 (-)	NCBI		HuRef
CHM1_1	21	40,275,470 - 40,282,285 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	37,726,869 - 37,733,757 (-)	NCBI		T2T-CHM13v2.0

Hmgn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	95,922,788 - 95,928,925 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	95,921,818 - 95,928,929 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	96,121,588 - 96,127,725 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	96,120,618 - 96,127,729 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	96,343,195 - 96,349,332 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	96,226,498 - 96,232,635 (-)	NCBI		MGSCv36	mm8
Celera	16	97,195,761 - 97,201,908 (-)	NCBI		Celera
Cytogenetic Map	16	C4	NCBI
cM Map	16	56.83	NCBI

Hmgn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	48,891,813 - 48,897,732 (-)	NCBI		GRCr8
mRatBN7.2	11	35,422,328 - 35,428,247 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	35,422,328 - 35,428,254 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	44,079,503 - 44,085,432 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	36,750,883 - 36,756,812 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	35,896,729 - 35,902,648 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	36,474,028 - 36,479,947 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	36,474,840 - 36,479,868 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	11	39,482,408 - 39,488,326 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	40,004,657 - 40,010,576 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	36,429,800 - 36,435,719 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	36,487,388 - 36,493,308 (-)	NCBI
Celera	11	33,043,906 - 33,049,825 (+)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

HMGN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	35,440,108 - 35,446,982 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	30,295,901 - 30,302,764 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	25,695,582 - 25,702,689 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	39,034,042 - 39,040,978 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

HMGN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	34,275,400 - 34,283,373 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	34,275,839 - 34,282,340 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	33,387,631 - 33,395,816 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	33,621,627 - 33,629,793 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	33,621,627 - 33,629,802 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	33,494,281 - 33,502,445 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	33,498,856 - 33,507,137 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	33,989,864 - 33,998,049 (-)	NCBI		UU_Cfam_GSD_1.0

Hmgn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	33,615,824 - 33,622,503 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	3,847,517 - 3,852,039 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	3,845,320 - 3,852,000 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HMGN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	202,905,233 - 202,943,575 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	202,936,313 - 202,943,496 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	213,102,765 - 213,109,753 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

HMGN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	83,296,811 - 83,303,581 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	11,156,978 - 11,163,836 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hmgn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	24,659,334 - 24,665,221 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	24,659,391 - 24,665,874 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01007796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01047791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCLAT00000008318 ⟹ ENSCLAP00000008192

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955407	38,136,386 - 38,143,479 (-)	Ensembl

RefSeq Acc Id:

XM_005375983 ⟹ XP_005376040

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955407	38,136,386 - 38,142,587 (-)	NCBI

Sequence:

show sequence

CGTCACGCGGCCGGGCATTGTTCTCGGCGGGGCTGTGGCTGGAGGCAGCGATCCGGGGTTCCGG
GCGCGCTGTGCCCATCCCGTGTGTTTCTCCCGCAGGTCAGCTCGGCCGAAGGGGCGGCGAAGGA
GGAGCCCAAGAGAAGATCGGCGAGGTTGTCGGCTAAACCTGCTCCTGCAAAAGTGGAAACGAAG
CCCAAAAAAGCAGCGGGAAAGGATAAATCTTCAGACAAAAAAGTGCAGGCAAAAGGCAAAAGGG
GAGCCAAGGGAAAACAGGCTGAAGTGGCTAATCAAGAAACCAAGGAAGATTTACCTGCGGAAAA
TGGAGAAACTAAAAACGAGGAGAGTGCAGCTTCTGACGAAGCAGAGGAGAAAGAAGCCAAGTCC
GATTAATCACACACCGCGTCTTACCAGTGCTCCCTGTCTCCCTTCTTGTACAATCCAGAGGAAT
ATTTTTATCAACTATTTTGTAAATGCAAGTTTTTTAGTAGCTCTAGAAACATTTTTAAAAAGGA
GGGAATCCCACCTCATCGCATTTTTTAAGTGTAAATGATTTTTTTTAGAGGTGAAATCATTCGC
TGGTTGTTTATTTTTTGGTACAACCAGAAAATAGTGGGATATTGAATTATGGCAGGCTCTGACT
GTCCGGGTGTCAGCTTAACATTCCATAGGTGGGGGTTAGTTTTATATCCTGCAATACAAAGCAT
ACTAAATAGCAATTTGGAGTCACAGTCATGCATTTAATATGTCTTGAATATTTTAAATGACTTC
TATTCCCATGTTGTTTTTAGTAGAATCGTTTCCTAAAGAAAACTACTTCCTGATTGTTGCCTGT
CGGAATCGTGTGCACTCTGCAGCATCTTTGGTCGTGGTAGTCCCGTTTGCCTAATTTTGTTAAT
GTGCTGTGAAAGATTGAAAATTGGAGTATGTAGTGTATGTGATACGAAATTGTAAACCGGTGGG
ACTTAAGTAACACTTTGTCAGCATTTGAGGATACTGGTACTTAATCCTCTTCTGGGAAATTTGC
CTCCAAATTTGAAGCTGGAAAGTCACTGGAATAACTGAAAAAAAAAAAACCAATACATGGCGTT
CTAGATTTTTGGTACGTGTGTTAAGAATTGTGTACAAAGTGAAATGTCTGTACTGATCCTCAAC
ACAACCAATAAAATCTCAAATATGGAAGACAGTTTTGAAGTATGCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_005376040	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000008192.1

RefSeq Acc Id:	XP_005376040 ⟸ XM_005375983
- Sequence:	show sequence RHAAGHCSRRGCGWRQRSGVPGALCPSRVFLPQVSSAEGAAKEEPKRRSARLSAKPAPAKVETK PKKAAGKDKSSDKKVQAKGKRGAKGKQAEVANQETKEDLPAENGETKNEESAASDEAEEKEAKS D hide sequence

RefSeq Acc Id:

ENSCLAP00000008192 ⟸ ENSCLAT00000008318

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000005744	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000008318.1	UniProtKB/TrEMBL
InterPro	HMGN_fam	UniProtKB/TrEMBL
NCBI Gene	Hmgn1	ENTREZGENE
PANTHER	NON-HISTONE CHROMOSOMAL PROTEIN HMG-14	UniProtKB/TrEMBL
	NONHISTONE CHROMOSOMAL PROTEIN HMG	UniProtKB/TrEMBL
Pfam	HMG14_17	UniProtKB/TrEMBL
PRINTS	NONHISHMG17	UniProtKB/TrEMBL
PROSITE	HMG14_17	UniProtKB/TrEMBL
SMART	HMG17	UniProtKB/TrEMBL
UniProt	A0A8C2V4X0_CHILA	UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations