Uvssa (UV stimulated scaffold protein A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Uvssa (UV stimulated scaffold protein A) Ictidomys tridecemlineatus
Analyze
Symbol: Uvssa
Name: UV stimulated scaffold protein A
RGD ID: 12471831
Description: ENCODES a protein that exhibits RNA polymerase II complex binding (inferred); INVOLVED IN protein ubiquitination (inferred); response to UV (inferred); transcription-coupled nucleotide-excision repair (inferred); ASSOCIATED WITH cherubism (ortholog); genetic disease (ortholog); UV-sensitive syndrome (ortholog); FOUND IN chromosome (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: UV stimulated scaffold protein A, transcript variant X1; UV stimulated scaffold protein A, transcript variant X2; UV-stimulated scaffold protein A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,216,400 - 68,250,638 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,918,062 - 21,950,904 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,918,091 - 21,950,895 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleoplasm  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Uvssa
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528568,216,400 - 68,250,638 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647721,918,062 - 21,950,904 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647721,918,091 - 21,950,895 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UVSSA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3841,342,011 - 1,395,989 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl41,345,691 - 1,395,989 (+)EnsemblGRCh38hg38GRCh38
GRCh3741,340,996 - 1,381,837 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3641,331,104 - 1,371,732 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map4p16.3NCBI
HuRef41,308,628 - 1,349,495 (+)NCBIHuRef
CHM1_141,340,917 - 1,381,652 (+)NCBICHM1_1
T2T-CHM13v2.041,340,627 - 1,394,173 (+)NCBIT2T-CHM13v2.0
Uvssa
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39533,535,868 - 33,578,243 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl533,535,893 - 33,577,098 (+)EnsemblGRCm39 Ensembl
GRCm38533,378,523 - 33,420,899 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl533,378,549 - 33,419,754 (+)EnsemblGRCm38mm10GRCm38
MGSCv37533,721,345 - 33,762,403 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36533,695,553 - 33,739,362 (+)NCBIMGSCv36mm8
Celera530,857,971 - 30,898,922 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.6NCBI
Uvssa
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81481,535,179 - 81,576,444 (-)NCBIGRCr8
mRatBN7.21477,309,188 - 77,351,922 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1477,314,056 - 77,351,903 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1481,767,777 - 81,803,602 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,008,324 - 83,044,153 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01479,453,658 - 79,489,481 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01482,621,028 - 82,658,912 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1482,623,050 - 82,658,891 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,605,796 - 80,625,363 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01483,306,349 - 83,344,222 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41483,163,555 - 83,199,401 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11483,172,596 - 83,201,792 (+)NCBI
Celera1476,235,354 - 76,271,195 (-)NCBICelera
Cytogenetic Map14q21NCBI
Uvssa
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955514728,522 - 756,348 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955514725,257 - 754,274 (+)NCBIChiLan1.0ChiLan1.0
UVSSA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v231,675,775 - 1,730,773 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan141,647,029 - 1,697,904 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v041,492,716 - 1,532,114 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.141,373,342 - 1,414,370 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl41,373,562 - 1,413,982 (+)Ensemblpanpan1.1panPan2
UVSSA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1362,647,992 - 62,674,830 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl362,649,207 - 62,674,884 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha365,164,269 - 65,191,104 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0363,123,038 - 63,149,871 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl363,122,139 - 63,149,785 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1362,615,036 - 62,641,849 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0362,818,473 - 62,845,272 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0363,177,842 - 63,204,679 (-)NCBIUU_Cfam_GSD_1.0
UVSSA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl8573,426 - 601,944 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.18573,299 - 602,617 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
UVSSA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12747,378,310 - 47,418,861 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2747,378,770 - 47,417,559 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660513,676,911 - 3,758,293 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Uvssa
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475525,903,377 - 25,930,043 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475525,904,273 - 25,930,564 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000005738   ⟹   ENSSTOP00000005132
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647721,918,062 - 21,950,904 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000037613   ⟹   ENSSTOP00000027745
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647721,918,062 - 21,950,904 (-)Ensembl
RefSeq Acc Id: XM_021722187   ⟹   XP_021577862
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,216,400 - 68,248,767 (-)NCBI
SpeTri2.0NW_00493647721,918,091 - 21,950,895 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040292851   ⟹   XP_040148785
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,216,400 - 68,249,214 (-)NCBI
RefSeq Acc Id: XM_040292852   ⟹   XP_040148786
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,216,400 - 68,248,767 (-)NCBI
RefSeq Acc Id: XR_005737158
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528568,224,711 - 68,250,638 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021577862 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148785 (Get FASTA)   NCBI Sequence Viewer  
  XP_040148786 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005132.3
  ENSSTOP00000027745.1
GenBank Protein KAG3277078 (Get FASTA)   NCBI Sequence Viewer  
  KAG3277079 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021577862   ⟸   XM_021722187
- Peptide Label: isoform X1
- UniProtKB: I3M6L5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040148785   ⟸   XM_040292851
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040148786   ⟸   XM_040292852
- Peptide Label: isoform X3
- UniProtKB: A0A287D2K8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000005132   ⟸   ENSSTOT00000005738
RefSeq Acc Id: ENSSTOP00000027745   ⟸   ENSSTOT00000037613
Protein Domains
UV-stimulated scaffold protein A C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005729 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005738.3 UniProtKB/TrEMBL
  ENSSTOT00000037613.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.90 UniProtKB/TrEMBL
InterPro ENTH_VHS UniProtKB/TrEMBL
  UVSSA UniProtKB/TrEMBL
  UVSSA_C UniProtKB/TrEMBL
  UVSSA_N_a-solenoid_rpt UniProtKB/TrEMBL
NCBI Gene Uvssa ENTREZGENE
PANTHER PTHR28670 UniProtKB/TrEMBL
  UV-STIMULATED SCAFFOLD PROTEIN A UniProtKB/TrEMBL
Pfam DUF2043 UniProtKB/TrEMBL
  UVSSA_N UniProtKB/TrEMBL
Superfamily-SCOP SSF48464 UniProtKB/TrEMBL
UniProt A0A287D2K8 ENTREZGENE, UniProtKB/TrEMBL
  I3M6L5 ENTREZGENE, UniProtKB/TrEMBL