Prkar2b (protein kinase cAMP-dependent type II regulatory subunit beta) - Rat Genome Database

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Gene: Prkar2b (protein kinase cAMP-dependent type II regulatory subunit beta) Rattus norvegicus
Analyze
Symbol: Prkar2b
Name: protein kinase cAMP-dependent type II regulatory subunit beta
RGD ID: 3394
Description: Enables cAMP binding activity; cAMP-dependent protein kinase regulator activity; and protein domain specific binding activity. Involved in response to antipsychotic drug. Located in dendrite; neuronal cell body; and perinuclear region of cytoplasm. Part of cAMP-dependent protein kinase complex. Orthologous to human PRKAR2B (protein kinase cAMP-dependent type II regulatory subunit beta); PARTICIPATES IN protein kinase A (PKA) signaling pathway; apoptotic cell death pathway; insulin signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cAMP-dependent protein kinase type II-beta regulatory subunit; MGC116401; protein kinase cAMP-dependent type 2 regulatory subunit beta; protein kinase, cAMP dependent regulatory, type II beta; protein kinase, cAMP-dependent, regulatory subunit type II beta; RATDNA; type II beta regulatory subunit of cAMP-dependent protein kinase
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8654,291,143 - 54,381,639 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl654,291,151 - 54,381,411 (-)EnsemblGRCr8
mRatBN7.2648,563,659 - 48,653,933 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,563,662 - 48,653,933 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx648,871,858 - 48,963,126 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0649,186,776 - 49,278,045 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,632,811 - 48,723,147 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0651,265,509 - 51,356,383 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl651,265,515 - 51,356,383 (-)Ensemblrn6Rnor6.0
Rnor_5.0659,936,123 - 60,027,242 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4650,234,979 - 50,325,298 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera647,765,297 - 47,855,503 (-)NCBICelera
RGSC_v3.1650,238,107 - 50,306,399 (-)NCBI
Cytogenetic Map6q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-naphthylamine  (ISO)
3',5'-cyclic AMP  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetamide  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
alpha-Zearalanol  (EXP)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (EXP,ISO)
Bisphenol B  (ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
chenodeoxycholic acid  (ISO)
chlordecone  (ISO)
chlorpyrifos  (EXP)
cisplatin  (ISO)
clozapine  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP,ISO)
deoxycholic acid  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diethyl phthalate  (ISO)
diisobutyl phthalate  (ISO)
diisononyl phthalate  (ISO)
dioxygen  (EXP,ISO)
diquat  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furan  (EXP)
glucose  (EXP,ISO)
glycochenodeoxycholic acid  (ISO)
glycocholic acid  (ISO)
glycodeoxycholic acid  (ISO)
glyphosate  (ISO)
haloperidol  (EXP)
hypochlorous acid  (ISO)
indometacin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
methylseleninic acid  (ISO)
microcystin-LR  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N(6)-butyryl-cAMP  (ISO)
N-ethyl-N-nitrosourea  (EXP)
nickel sulfate  (ISO)
nicotine  (ISO)
nitrates  (ISO)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctanoic acid  (EXP)
PhIP  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
Salidroside  (EXP)
SB 431542  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (ISO)
succimer  (ISO)
sunitinib  (ISO)
Sunset Yellow FCF  (ISO)
taurine  (ISO)
testosterone  (ISO)
testosterone enanthate  (EXP)
tetrachloromethane  (EXP,ISO)
thapsigargin  (EXP)
titanium dioxide  (ISO)
topiramate  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
troglitazone  (EXP)
undecane  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cAMP-dependent protein kinase complex  (IBA,IDA,IEA,ISO)
centrosome  (IEA,ISO)
ciliary base  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IBA,IEA,ISO)
dendrite  (IDA)
dendritic shaft  (IEA,ISO,ISS)
dendritic spine  (IEA,ISO,ISS)
glutamatergic synapse  (IEA,ISO)
neuronal cell body  (IDA)
perinuclear region of cytoplasm  (IDA)
plasma membrane  (IEA,ISO)
postsynapse  (IEA,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Association of dystrobrevin and regulatory subunit of protein kinase A: a new role for dystrobrevin as a scaffold for signaling proteins. Ceccarini M, etal., J Mol Biol. 2007 Aug 31;371(5):1174-87. doi: 10.1016/j.jmb.2007.06.019. Epub 2007 Jun 14.
2. FSH-regulated gene expression profiles in ovarian tumours and normal ovaries. Chu S, etal., Mol Hum Reprod. 2002 May;8(5):426-33.
3. Differential effects of haloperidol and clozapine on cAMP binding, protein kinase A (PKA) activity, and mRNA and protein expression of selective regulatory and catalytic subunit isoforms of PKA in rat brain. Dwivedi Y, etal., J Pharmacol Exp Ther. 2002 Apr;301(1):197-209.
4. Yotiao protein, a ligand for the NMDA receptor, binds and targets cAMP-dependent protein kinase II(1). Feliciello A, etal., FEBS Lett 1999 Dec 31;464(3):174-8.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
7. Molecular cloning, cDNA structure, and regulation of the regulatory subunit of type II cAMP-dependent protein kinase from rat ovarian granulosa cells. Jahnsen T, etal., J Biol Chem 1986 Sep 15;261(26):12352-61.
8. An active protein kinase A (PKA) is involved in meiotic arrest of rat growing oocytes. Kovo M, etal., Reproduction. 2006 Jul;132(1):33-43.
9. Identification and characterization of the GC-rich and cyclic adenosine 3',5'-monophosphate (cAMP)-inducible promoter of the type II beta cAMP-dependent protein kinase regulatory subunit gene. Kurten RC, etal., Mol Endocrinol 1992 Apr;6(4):536-50.
10. Phosphorylation of the cAMP-dependent protein kinase (PKA) regulatory subunit modulates PKA-AKAP interaction, substrate phosphorylation, and calcium signaling in cardiac cells. Manni S, etal., J Biol Chem. 2008 Aug 29;283(35):24145-54. Epub 2008 Jun 12.
11. Spatial organisation of AKAP18 and PDE4 isoforms in renal collecting duct principal cells. McSorley T, etal., Eur J Cell Biol. 2006 Jul;85(7):673-8. Epub 2006 Feb 28.
12. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
13. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
14. Localization of cyclic nucleotide phosphodiesterase 2 in the brain-derived Triton-insoluble low-density fraction (raft). Noyama K and Maekawa S, Neurosci Res. 2003 Feb;45(2):141-8.
15. LRRK2 regulates synaptogenesis and dopamine receptor activation through modulation of PKA activity. Parisiadou L, etal., Nat Neurosci. 2014 Mar;17(3):367-76. doi: 10.1038/nn.3636. Epub 2014 Jan 26.
16. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
17. GOA pipeline RGD automated data pipeline
18. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
19. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
20. Molecular cloning, cDNA structure and deduced amino acid sequence for the hormone-induced regulatory subunit (RII beta) of cAMP-dependent protein kinase from rat ovarian granulosa cells. Sandberg M, etal., Biochem Biophys Res Commun 1988 Jul 29;154(2):705-11.
21. Occurrence of A-kinase anchor protein and associated cAMP-dependent protein kinase in the inner compartment of mammalian mitochondria. Sardanelli AM, etal., FEBS Lett. 2006 Oct 16;580(24):5690-6. Epub 2006 Sep 18.
22. Localized effects of cAMP mediated by distinct routes of protein kinase A. Tasken K and Aandahl EM, Physiol Rev. 2004 Jan;84(1):137-67.
23. cAMP-dependent protein kinase regulatory subunit type IIbeta: active site mutations define an isoform-specific network for allosteric signaling by cAMP. Zawadzki KM and Taylor SS, J Biol Chem. 2004 Feb 20;279(8):7029-36. Epub 2003 Nov 18.
24. Subcellular dynamics of type II PKA in neurons. Zhong H, etal., Neuron. 2009 May 14;62(3):363-74. doi: 10.1016/j.neuron.2009.03.013.
Additional References at PubMed
PMID:7775586   PMID:8757131   PMID:8889548   PMID:9570795   PMID:11342137   PMID:12477932   PMID:14967031   PMID:15483123   PMID:16641100   PMID:19236309   PMID:19748511   PMID:21399614  
PMID:21423175   PMID:21502359   PMID:21812984   PMID:22007132   PMID:22323819   PMID:22871113   PMID:23533145   PMID:25112875   PMID:26158466   PMID:30053369  


Genomics

Comparative Map Data
Prkar2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8654,291,143 - 54,381,639 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl654,291,151 - 54,381,411 (-)EnsemblGRCr8
mRatBN7.2648,563,659 - 48,653,933 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl648,563,662 - 48,653,933 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx648,871,858 - 48,963,126 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0649,186,776 - 49,278,045 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0648,632,811 - 48,723,147 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0651,265,509 - 51,356,383 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl651,265,515 - 51,356,383 (-)Ensemblrn6Rnor6.0
Rnor_5.0659,936,123 - 60,027,242 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4650,234,979 - 50,325,298 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera647,765,297 - 47,855,503 (-)NCBICelera
RGSC_v3.1650,238,107 - 50,306,399 (-)NCBI
Cytogenetic Map6q16NCBI
PRKAR2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387107,044,705 - 107,161,811 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7107,044,627 - 107,161,811 (+)Ensemblhg38GRCh38
GRCh377106,685,150 - 106,802,256 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367106,472,414 - 106,589,492 (+)NCBIBuild 36Build 36hg18NCBI36
Build 347106,279,128 - 106,396,206NCBI
Celera7101,490,496 - 101,607,543 (+)NCBICelera
Cytogenetic Map7q22.3NCBI
HuRef7101,045,272 - 101,162,795 (+)NCBIHuRef
CHM1_17106,618,759 - 106,735,827 (+)NCBICHM1_1
T2T-CHM13v2.07108,360,790 - 108,477,853 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27106,046,282 - 106,163,333 (+)NCBI
Prkar2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391232,008,468 - 32,111,639 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1232,008,475 - 32,111,295 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381231,958,450 - 32,061,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1231,958,476 - 32,061,296 (-)Ensemblmm10GRCm38
MGSCv371232,643,344 - 32,746,144 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361232,545,033 - 32,646,499 (-)NCBIMGSCv36mm8
Celera1233,412,788 - 33,510,684 (-)NCBICelera
Cytogenetic Map12A3NCBI
cM Map1213.74NCBI
Prkar2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541011,553,508 - 11,622,138 (+)Ensembl
ChiLan1.0NW_00495541011,529,530 - 11,620,085 (+)NCBIChiLan1.0ChiLan1.0
PRKAR2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26143,884,602 - 144,004,559 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17192,154,606 - 192,274,526 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0799,021,209 - 99,140,652 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17111,748,463 - 111,866,044 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7111,748,463 - 111,866,044 (+)EnsemblpanPan2panpan1.1
PRKAR2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11813,375,216 - 13,467,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1813,376,425 - 13,468,038 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1813,024,300 - 13,116,617 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01813,645,633 - 13,738,378 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1813,646,571 - 13,738,721 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11813,461,865 - 13,554,232 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01813,382,039 - 13,474,442 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01813,659,873 - 13,752,991 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Prkar2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511855,770,299 - 55,865,110 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647916,894,068 - 16,988,885 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647916,894,068 - 16,988,879 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRKAR2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9106,851,031 - 106,957,510 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19106,851,044 - 106,957,519 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PRKAR2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12175,966,957 - 76,079,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2175,967,053 - 76,081,729 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604227,778,390 - 27,891,673 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prkar2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473922,539,087 - 22,635,248 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473922,539,369 - 22,635,090 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Prkar2b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1745,351,669 - 45,441,765 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Prkar2b
557 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:279
Count of miRNA genes:165
Interacting mature miRNAs:221
Transcripts:ENSRNOT00000012415
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590290Uminl2Urine mineral level QTL 23.960.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)64451097489510974Rat
8693632Alc27Alcohol consumption QTL 272.20.791drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)64005241156848866Rat
634318Bw118Body weight QTL 1183.55abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)63902865963457441Rat
4889933Bss88Bone structure and strength QTL 883.8tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)65368492198684921Rat
10401812Kidm54Kidney mass QTL 54kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
634307Bp141Blood pressure QTL 1414arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)64095756485957564Rat
1331743Uae28Urinary albumin excretion QTL 284.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)64515378690153786Rat
8552910Pigfal5Plasma insulin-like growth factor 1 level QTL 54.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)62265388967653889Rat
10401800Kidm49Kidney mass QTL 49kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)62009763565097635Rat
5684992Bmd83Bone mineral density QTL 824.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)65368492198684921Rat
1331779Rf38Renal function QTL 382.876kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)63118500276185002Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)64604735391047353Rat
2293839Kiddil2Kidney dilation QTL 24.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
9590140Scort4Serum corticosterone level QTL 414.490.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
2301964Bp323Blood pressure QTL 3234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)6186868070Rat
9590306Scort18Serum corticosterone level QTL 182.880.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)64451097489510974Rat
1578665Bss16Bone structure and strength QTL 164.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)63332884178328841Rat
2293841Kiddil4Kidney dilation QTL 44.4kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)62661831486868070Rat
1641898Colcr4Colorectal carcinoma resistance QTL43.710.0007intestine integrity trait (VT:0010554)well differentiated malignant colorectal tumor surface area measurement (CMO:0002077)63093763275937632Rat
1578668Bmd14Bone mineral density QTL 143.8femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)63332884178328841Rat
6893340Cm77Cardiac mass QTL 770.260.57heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)63902865986867923Rat
5684963Bss99Bone structure and strength QTL 993.1tibia area (VT:1000281)tibia area measurement (CMO:0001382)65368492198684921Rat
70199Coreg1Compensatory renal growth QTL 111.8kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)61459947363457687Rat
2301972Bp325Blood pressure QTL 3254.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)61608937261967788Rat
1354664Slep2Serum leptin concentration QTL 24.49blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)62228825767288257Rat
1300143Rf14Renal function QTL 142.92renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)64016318385163183Rat

Markers in Region
D6Arb12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,657,765 - 48,658,068 (+)MAPPERmRatBN7.2
Rnor_6.0651,360,215 - 51,360,517NCBIRnor6.0
Rnor_5.0660,030,865 - 60,031,167UniSTSRnor5.0
RGSC_v3.4650,329,129 - 50,329,432RGDRGSC3.4
RGSC_v3.4650,329,130 - 50,329,432UniSTSRGSC3.4
Celera647,859,335 - 47,859,637UniSTS
RGSC_v3.1650,332,255 - 50,332,558RGD
RH 3.4 Map6303.6UniSTS
RH 3.4 Map6303.6RGD
RH 2.0 Map6470.5RGD
FHH x ACI Map643.7499RGD
Cytogenetic Map6q16UniSTS
RH139912  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,565,490 - 48,565,670 (+)MAPPERmRatBN7.2
Rnor_6.0651,267,341 - 51,267,520NCBIRnor6.0
Rnor_5.0659,937,955 - 59,938,134UniSTSRnor5.0
RGSC_v3.4650,236,811 - 50,236,990UniSTSRGSC3.4
Celera647,767,144 - 47,767,323UniSTS
RH 3.4 Map6321.3UniSTS
Cytogenetic Map6q16UniSTS
RH140571  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2648,651,991 - 48,652,199 (+)MAPPERmRatBN7.2
Rnor_6.0651,354,442 - 51,354,649NCBIRnor6.0
Rnor_5.0660,025,092 - 60,025,299UniSTSRnor5.0
RGSC_v3.4650,323,357 - 50,323,564UniSTSRGSC3.4
Celera647,853,562 - 47,853,769UniSTS
RH 3.4 Map6321.3UniSTS
Cytogenetic Map6q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012415   ⟹   ENSRNOP00000012415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl654,291,151 - 54,381,411 (-)Ensembl
mRatBN7.2 Ensembl648,563,667 - 48,653,933 (-)Ensembl
Rnor_6.0 Ensembl651,265,515 - 51,356,383 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079719   ⟹   ENSRNOP00000074658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl654,292,730 - 54,341,953 (-)Ensembl
mRatBN7.2 Ensembl648,565,246 - 48,614,472 (-)Ensembl
Rnor_6.0 Ensembl651,267,096 - 51,316,943 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082985   ⟹   ENSRNOP00000073412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl648,563,662 - 48,595,009 (-)Ensembl
Rnor_6.0 Ensembl651,267,423 - 51,297,712 (-)Ensembl
RefSeq Acc Id: NM_001030020   ⟹   NP_001025191
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8654,291,143 - 54,381,411 (-)NCBI
mRatBN7.2648,563,659 - 48,653,933 (-)NCBI
Rnor_6.0651,265,509 - 51,356,383 (-)NCBI
Rnor_5.0659,936,123 - 60,027,242 (-)NCBI
RGSC_v3.4650,234,979 - 50,325,298 (-)RGD
Celera647,765,297 - 47,855,503 (-)RGD
Sequence:
RefSeq Acc Id: XM_017594037   ⟹   XP_017449526
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8654,291,143 - 54,359,892 (-)NCBI
mRatBN7.2648,563,659 - 48,632,064 (-)NCBI
Rnor_6.0651,265,509 - 51,334,923 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063261553   ⟹   XP_063117623
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8654,297,300 - 54,381,639 (-)NCBI
RefSeq Acc Id: NP_001025191   ⟸   NM_001030020
- UniProtKB: P12369 (UniProtKB/Swiss-Prot),   A6HB59 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449526   ⟸   XM_017594037
- Peptide Label: isoform X1
- UniProtKB: Q4KLG5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073412   ⟸   ENSRNOT00000082985
Ensembl Acc Id: ENSRNOP00000074658   ⟸   ENSRNOT00000079719
Ensembl Acc Id: ENSRNOP00000012415   ⟸   ENSRNOT00000012415
RefSeq Acc Id: XP_063117623   ⟸   XM_063261553
- Peptide Label: isoform X2
Protein Domains
Cyclic nucleotide-binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P12369-F1-model_v2 AlphaFold P12369 1-416 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3394 AgrOrtholog
BioCyc Gene G2FUF-37900 BioCyc
Ensembl Genes ENSRNOG00000009079 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000012415 ENTREZGENE
  ENSRNOT00000012415.7 UniProtKB/Swiss-Prot
  ENSRNOT00000079719 ENTREZGENE
Gene3D-CATH 2.60.120.10 UniProtKB/Swiss-Prot
  cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7388087 IMAGE-MGC_LOAD
InterPro cAMP-dep_kinase_reg_chain UniProtKB/Swiss-Prot
  cAMP_dep_PK_reg_su UniProtKB/Swiss-Prot
  cAMP_dep_PK_reg_su_I/II_a/b UniProtKB/Swiss-Prot
  cNMP-bd-like UniProtKB/Swiss-Prot
  cNMP-bd_CS UniProtKB/Swiss-Prot
  cNMP-bd_dom UniProtKB/Swiss-Prot
  RmlC-like_jellyroll UniProtKB/Swiss-Prot
KEGG Report rno:24679 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116401 IMAGE-MGC_LOAD
NCBI Gene 24679 ENTREZGENE
PANTHER CAMP-DEPENDENT PROTEIN KINASE REGULATORY CHAIN UniProtKB/Swiss-Prot
  CAMP-DEPENDENT PROTEIN KINASE TYPE II-BETA REGULATORY SUBUNIT UniProtKB/Swiss-Prot
Pfam cNMP_binding UniProtKB/Swiss-Prot
  RIIa UniProtKB/Swiss-Prot
PhenoGen Prkar2b PhenoGen
PIRSF PK_regulatory UniProtKB/Swiss-Prot
PRINTS CAMPKINASE UniProtKB/Swiss-Prot
PROSITE CNMP_BINDING_1 UniProtKB/Swiss-Prot
  CNMP_BINDING_2 UniProtKB/Swiss-Prot
  CNMP_BINDING_3 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000009079 RatGTEx
SMART cNMP UniProtKB/Swiss-Prot
  RIIa UniProtKB/Swiss-Prot
Superfamily-SCOP Dimerization-anchoring domain of cAMP-dependent PK regulatory subunit UniProtKB/Swiss-Prot
  SSF51206 UniProtKB/Swiss-Prot
UniProt A6HB59 ENTREZGENE, UniProtKB/TrEMBL
  KAP3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q4KLG5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-03 Prkar2b  protein kinase cAMP-dependent type II regulatory subunit beta  Prkar2b  protein kinase cAMP-dependent type 2 regulatory subunit beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-03 Prkar2b  protein kinase cAMP-dependent type 2 regulatory subunit beta  Prkar2b  protein kinase, cAMP-dependent, regulatory subunit type II beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-30 Prkar2b  protein kinase, cAMP-dependent, regulatory subunit type II beta  Prkar2b  protein kinase, cAMP dependent regulatory, type II beta  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2001-10-24 Prkar2b  protein kinase, cAMP dependent regulatory, type II beta      Name updated to reflect Human and Mouse nomenclature 68913 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_regulation expression is induced by estradiol and by follicle-stimulating hormone 727529