B4galt6 (beta-1,4-galactosyltransferase 6) - Rat Genome Database

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Advanced Search (OLGA)
Gene: B4galt6 (beta-1,4-galactosyltransferase 6) Rattus norvegicus
Analyze
Symbol: B4galt6
Name: beta-1,4-galactosyltransferase 6
RGD ID: 71046
Description: Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Involved in glycosphingolipid biosynthetic process. Predicted to be located in Golgi cisterna membrane and Golgi membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-diaminodiphenylmethane; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: b4Gal-T6; beta-1,4-GalTase 6; beta4Gal-T6; glucosylceramide beta-1,4-galactosyltransferase; LacCer synthase; Lactosylceramide Synthase; UDP-Gal:beta-GlcNAc beta-1,4-galactosyltransferase 6; UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6; UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase; UDP-galactose:beta-N-acetylglucosamine beta-1,4-galactosyltransferase 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81812,233,350 - 12,290,204 (-)NCBIGRCr8
mRatBN7.21811,958,382 - 12,015,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1811,958,390 - 12,015,247 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1812,154,136 - 12,212,289 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01812,941,785 - 12,999,961 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01812,213,423 - 12,271,600 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,462,913 - 15,525,584 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,462,913 - 15,525,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,241,489 - 15,300,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,421,062 - 12,478,276 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11812,447,708 - 12,504,922 (-)NCBI
Celera1811,965,996 - 12,023,192 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation. Mayo L, etal., Nat Med. 2014 Oct;20(10):1147-56. doi: 10.1038/nm.3681. Epub 2014 Sep 14.
5. Gene Data Set MGD Curation, June 12, 2002
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Purification, cDNA cloning, and expression of UDP-Gal: glucosylceramide beta-1,4-galactosyltransferase from rat brain. Nomura T, etal., J Biol Chem 1998 May 29;273(22):13570-7.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
11. GOA pipeline RGD automated data pipeline
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10320813   PMID:23882130   PMID:24498430   PMID:30114188  


Genomics

Comparative Map Data
B4galt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81812,233,350 - 12,290,204 (-)NCBIGRCr8
mRatBN7.21811,958,382 - 12,015,247 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1811,958,390 - 12,015,247 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1812,154,136 - 12,212,289 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01812,941,785 - 12,999,961 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01812,213,423 - 12,271,600 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01815,462,913 - 15,525,584 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,462,913 - 15,525,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,241,489 - 15,300,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,421,062 - 12,478,276 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11812,447,708 - 12,504,922 (-)NCBI
Celera1811,965,996 - 12,023,192 (-)NCBICelera
Cytogenetic Map18p12NCBI
B4GALT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381831,622,246 - 31,724,641 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1831,622,246 - 31,685,836 (-)EnsemblGRCh38hg38GRCh38
GRCh371829,202,209 - 29,266,006 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361827,457,131 - 27,518,626 (-)NCBINCBI36Build 36hg18NCBI36
Build 341827,457,130 - 27,518,626NCBI
Celera1826,009,322 - 26,071,820 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1826,059,097 - 26,121,851 (-)NCBIHuRef
CHM1_11829,129,480 - 29,191,957 (-)NCBICHM1_1
T2T-CHM13v2.01831,812,761 - 31,915,198 (-)NCBIT2T-CHM13v2.0
B4galt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391820,817,656 - 20,879,461 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1820,817,656 - 20,879,461 (-)EnsemblGRCm39 Ensembl
GRCm381820,684,599 - 20,746,404 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1820,684,599 - 20,746,404 (-)EnsemblGRCm38mm10GRCm38
MGSCv371820,843,100 - 20,904,905 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361820,829,013 - 20,889,414 (-)NCBIMGSCv36mm8
MGSCv36X144,134,077 - 144,155,020 (+)NCBIMGSCv36mm8
Celera1821,179,965 - 21,241,709 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.48NCBI
B4galt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540218,942,872 - 19,024,132 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540218,945,013 - 19,024,132 (-)NCBIChiLan1.0ChiLan1.0
B4GALT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21749,014,773 - 49,080,958 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11834,707,369 - 34,773,554 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01824,840,106 - 24,906,309 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11828,438,302 - 28,500,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,438,302 - 28,500,946 (-)Ensemblpanpan1.1panPan2
B4GALT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1757,849,872 - 57,917,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl757,849,884 - 57,914,360 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha757,286,934 - 57,354,734 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0757,834,554 - 57,902,751 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl757,834,634 - 57,902,832 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1757,511,630 - 57,579,326 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0757,537,715 - 57,605,342 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0757,826,294 - 57,894,519 (+)NCBIUU_Cfam_GSD_1.0
B4galt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494453,534,066 - 53,591,561 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366821,535,586 - 1,593,827 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366821,535,617 - 1,590,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6115,524,636 - 115,593,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16115,525,515 - 115,593,265 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26108,153,093 - 108,219,609 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11849,037,348 - 49,101,769 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1849,037,225 - 49,102,502 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605023,687,018 - 23,751,301 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
B4galt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247701,160,120 - 1,240,016 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247701,119,202 - 1,239,127 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in B4galt6
404 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:617
Count of miRNA genes:280
Interacting mature miRNAs:369
Transcripts:ENSRNOT00000021764
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
2301409Cm70Cardiac mass QTL 700.001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)18679125112205285Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
12904716Am21Aortic mass QTL 210.005aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)18679125112205285Rat
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
12904714Cm131Cardiac mass QTL 1310.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)18679125112205285Rat
12904715Cm132Cardiac mass QTL 1320.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)18679125112205285Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
11565454Kidm59Kidney mass QTL 590.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)18679125112205285Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat

Markers in Region
D18Wox23  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21811,958,910 - 11,959,165 (-)MAPPERmRatBN7.2
Rnor_6.01815,524,804 - 15,525,058NCBIRnor6.0
Rnor_5.01815,299,404 - 15,299,658UniSTSRnor5.0
RGSC_v3.41812,421,588 - 12,421,842UniSTSRGSC3.4
Celera1811,966,522 - 11,966,776UniSTS
Cytogenetic Map18p12UniSTS
RH129406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21811,961,846 - 11,962,032 (-)MAPPERmRatBN7.2
Rnor_6.01815,521,938 - 15,522,123NCBIRnor6.0
Rnor_5.01815,296,538 - 15,296,723UniSTSRnor5.0
RGSC_v3.41812,424,523 - 12,424,708UniSTSRGSC3.4
Celera1811,969,457 - 11,969,642UniSTS
RH 3.4 Map18109.7UniSTS
Cytogenetic Map18p12UniSTS
RH143942  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,014,459 - 12,014,579 (-)MAPPERmRatBN7.2
Rnor_6.01815,490,537 - 15,490,656NCBIRnor6.0
Rnor_6.01815,463,577 - 15,463,696NCBIRnor6.0
Rnor_5.01815,265,413 - 15,265,532UniSTSRnor5.0
RGSC_v3.41812,477,069 - 12,477,188UniSTSRGSC3.4
Celera1812,022,405 - 12,022,524UniSTS
RH 3.4 Map18113.8UniSTS
Cytogenetic Map18p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000021764   ⟹   ENSRNOP00000021764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1811,958,390 - 12,010,197 (-)Ensembl
Rnor_6.0 Ensembl1815,462,913 - 15,525,579 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091557   ⟹   ENSRNOP00000075106
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1815,490,717 - 15,521,849 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000091696   ⟹   ENSRNOP00000068803
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1815,467,870 - 15,524,112 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111678   ⟹   ENSRNOP00000082568
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1811,958,390 - 12,015,247 (-)Ensembl
RefSeq Acc Id: NM_031740   ⟹   NP_113928
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81812,233,351 - 12,290,204 (-)NCBI
mRatBN7.21811,958,385 - 12,015,247 (-)NCBI
Rnor_6.01815,462,913 - 15,525,584 (+)NCBI
Rnor_5.01815,241,489 - 15,300,184 (+)NCBI
RGSC_v3.41812,421,062 - 12,478,276 (-)RGD
Celera1811,965,996 - 12,023,192 (-)RGD
Sequence:
RefSeq Acc Id: XM_039097085   ⟹   XP_038953013
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81812,233,350 - 12,286,917 (-)NCBI
mRatBN7.21811,958,382 - 12,011,917 (-)NCBI
RefSeq Acc Id: XM_039097087   ⟹   XP_038953015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81812,233,350 - 12,281,738 (-)NCBI
mRatBN7.21811,958,382 - 12,006,770 (-)NCBI
RefSeq Acc Id: XM_039097088   ⟹   XP_038953016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81812,233,350 - 12,274,703 (-)NCBI
mRatBN7.21811,958,382 - 11,999,744 (-)NCBI
RefSeq Acc Id: NP_113928   ⟸   NM_031740
- UniProtKB: O88419 (UniProtKB/Swiss-Prot),   A6J2G4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000021764   ⟸   ENSRNOT00000021764
Ensembl Acc Id: ENSRNOP00000075106   ⟸   ENSRNOT00000091557
Ensembl Acc Id: ENSRNOP00000068803   ⟸   ENSRNOT00000091696
RefSeq Acc Id: XP_038953013   ⟸   XM_039097085
- Peptide Label: isoform X1
- UniProtKB: A0A0A0MXX9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038953015   ⟸   XM_039097087
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038953016   ⟸   XM_039097088
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000082568   ⟸   ENSRNOT00000111678
Protein Domains
Galactosyltransferase C-terminal   Galactosyltransferase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O88419-F1-model_v2 AlphaFold O88419 1-382 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700655
Promoter ID:EPDNEW_R11179
Type:initiation region
Name:B4galt6_1
Description:beta-1,4-galactosyltransferase 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01815,462,897 - 15,462,957EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:71046 AgrOrtholog
BioCyc Gene G2FUF-8221 BioCyc
BioCyc Pathway PWY-7836 [ganglio-series glycosphingolipids biosynthesis] BioCyc
  PWY-7838 [globo-series glycosphingolipids biosynthesis] BioCyc
  PWY-7839 [lacto-series glycosphingolipids biosynthesis] BioCyc
  PWY-7841 [neolacto-series glycosphingolipids biosynthesis] BioCyc
BioCyc Pathway Image PWY-7836 BioCyc
  PWY-7838 BioCyc
  PWY-7839 BioCyc
  PWY-7841 BioCyc
Ensembl Genes ENSRNOG00000015895 Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055018341 UniProtKB/Swiss-Prot
  ENSRNOG00060012590 UniProtKB/Swiss-Prot
  ENSRNOG00065015185 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000021764.8 UniProtKB/TrEMBL
  ENSRNOT00000111678.1 UniProtKB/Swiss-Prot
  ENSRNOT00055031163 UniProtKB/Swiss-Prot
  ENSRNOT00060021366 UniProtKB/Swiss-Prot
  ENSRNOT00065025162 UniProtKB/Swiss-Prot
InterPro Galactosyl_T UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65196 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 65196 ENTREZGENE
PANTHER BETA-1,4-GALACTOSYLTRANSFERASE 6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR19300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen B4galt6 PhenoGen
PRINTS B14GALTRFASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000015895 RatGTEx
  ENSRNOG00055018341 RatGTEx
  ENSRNOG00060012590 RatGTEx
  ENSRNOG00065015185 RatGTEx
Superfamily-SCOP SSF53448 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0A0MXX9 ENTREZGENE, UniProtKB/TrEMBL
  A6J2G4 ENTREZGENE, UniProtKB/TrEMBL
  B4GT6_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 B4galt6  beta-1,4-galactosyltransferase 6  B4galt6  UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-07-09 B4galt6  UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6      Symbol and Name updated to reflect Human and Mouse nomenclature 70877 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 382 amino acids; 44.7 kDa 70807