B4galt6 (beta-1,4-galactosyltransferase 6) - Rat Genome Database

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Gene: B4galt6 (beta-1,4-galactosyltransferase 6) Ictidomys tridecemlineatus
Analyze
Symbol: B4galt6
Name: beta-1,4-galactosyltransferase 6
RGD ID: 12680603
Description: ENCODES a protein that exhibits UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity (ortholog); INVOLVED IN glycosphingolipid biosynthetic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Experimental Autoimmune Encephalomyelitis (ortholog); intellectual disability (ortholog); multiple sclerosis (ortholog); FOUND IN Golgi apparatus (inferred); Golgi cisterna membrane (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494453,534,066 - 53,591,561 (+)NCBI
SpeTri2.0NW_0049366821,535,617 - 1,590,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
B4galt6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494453,534,066 - 53,591,561 (+)NCBI
SpeTri2.0NW_0049366821,535,617 - 1,590,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381831,622,246 - 31,724,641 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1831,622,246 - 31,685,836 (-)EnsemblGRCh38hg38GRCh38
GRCh371829,202,209 - 29,266,006 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361827,457,131 - 27,518,626 (-)NCBINCBI36hg18NCBI36
Build 341827,457,130 - 27,518,626NCBI
Celera1826,009,322 - 26,071,820 (-)NCBI
Cytogenetic Map18q12.1NCBI
HuRef1826,059,097 - 26,121,851 (-)NCBIHuRef
CHM1_11829,129,480 - 29,191,957 (-)NCBICHM1_1
T2T-CHM13v2.01831,812,761 - 31,876,559 (-)NCBI
B4galt6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391820,817,656 - 20,879,461 (-)NCBIGRCm39mm39
GRCm39 Ensembl1820,817,656 - 20,879,461 (-)Ensembl
GRCm381820,684,599 - 20,746,404 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1820,684,599 - 20,746,404 (-)EnsemblGRCm38mm10GRCm38
MGSCv371820,843,100 - 20,904,905 (-)NCBIGRCm37mm9NCBIm37
MGSCv361820,829,013 - 20,889,414 (-)NCBImm8
MGSCv36X144,134,077 - 144,155,020 (+)NCBImm8
Celera1821,179,965 - 21,241,709 (-)NCBICelera
Cytogenetic Map18A2NCBI
B4galt6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21811,958,382 - 12,015,247 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1811,958,390 - 12,015,247 (-)Ensembl
Rnor_6.01815,462,913 - 15,525,584 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1815,462,913 - 15,525,579 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01815,241,489 - 15,300,184 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,421,062 - 12,478,276 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11812,447,708 - 12,504,922 (-)NCBI
Celera1811,965,996 - 12,023,192 (-)NCBICelera
Cytogenetic Map18p12NCBI
B4galt6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540218,942,872 - 19,024,132 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540218,945,013 - 19,024,132 (-)NCBIChiLan1.0ChiLan1.0
B4GALT6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11828,438,302 - 28,500,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1828,438,302 - 28,500,946 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01824,840,106 - 24,906,309 (-)NCBIMhudiblu_PPA_v0panPan3
B4GALT6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1757,849,872 - 57,917,289 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl757,849,884 - 57,914,360 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha757,286,934 - 57,354,734 (+)NCBI
ROS_Cfam_1.0757,834,554 - 57,902,751 (+)NCBI
ROS_Cfam_1.0 Ensembl757,834,634 - 57,902,832 (+)Ensembl
UMICH_Zoey_3.1757,511,630 - 57,579,326 (+)NCBI
UNSW_CanFamBas_1.0757,537,715 - 57,605,342 (+)NCBI
UU_Cfam_GSD_1.0757,826,294 - 57,894,519 (+)NCBI
B4GALT6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6115,524,636 - 115,593,270 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16115,525,515 - 115,593,265 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26108,153,093 - 108,219,609 (-)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11849,037,348 - 49,101,769 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1849,037,225 - 49,102,502 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605023,687,018 - 23,751,301 (+)NCBIVero_WHO_p1.0
B4galt6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247701,160,120 - 1,240,016 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247701,119,202 - 1,239,127 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005337458   ⟹   XP_005337515
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494453,534,066 - 53,591,561 (+)NCBI
SpeTri2.0NW_0049366821,535,617 - 1,590,723 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337515 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3294030 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005337515   ⟸   XM_005337458
- UniProtKB: I3MGC4 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010911 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009788 ENTREZGENE
  ENSSTOP00000009788.3 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010913.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene B4galt6 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3MGC4 ENTREZGENE, UniProtKB/TrEMBL