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Gene: Scn3b (sodium voltage-gated channel beta subunit 3) Rattus norvegicus

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Symbol:

Scn3b

Name:

sodium voltage-gated channel beta subunit 3

RGD ID:

621657

Description:

Predicted to enable sodium channel inhibitor activity; transmembrane transporter binding activity; and voltage-gated sodium channel activity involved in cardiac muscle cell action potential. Involved in nervous system development and sodium ion transport. Predicted to be located in Z disc and plasma membrane. Predicted to be part of voltage-gated sodium channel complex. Human ortholog(s) of this gene implicated in Brugada syndrome 7. Orthologous to human SCN3B (sodium voltage-gated channel beta subunit 3); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Scnb3; sodium channel beta 3 subunit; sodium channel regulatory subunit beta-3; sodium channel subunit beta-3; sodium channel, voltage-gated, type III, beta; sodium channel, voltage-gated, type III, beta subunit

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	49,527,577 - 49,550,018 (+)	Ensembl				GRCr8
mRatBN7.2	8	40,630,372 - 40,652,869 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	40,630,455 - 40,652,868 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	46,138,136 - 46,160,555 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	44,416,727 - 44,439,130 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	42,284,327 - 42,306,725 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	44,136,413 - 44,159,011 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	44,136,496 - 44,159,010 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	61,379,751 - 61,402,348 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	43,231,453 - 43,254,066 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	40,246,442 - 40,268,779 (+)	NCBI		Celera
RGSC_v3.1	8	43,240,218 - 43,262,831 (+)	NCBI
Cytogenetic Map	8	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

brain edema (ISO)

Brugada syndrome (ISO)

Brugada syndrome 7 (ISO,ISS)

Cardiac Arrhythmias (ISO)

cardiomyopathy (ISO)

Infant Death (ISO)

long QT syndrome (ISO)

Sudden Cardiac Death (ISO)

Sudden Unexpected Nocturnal Death Syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (EXP)

6-propyl-2-thiouracil (EXP)

actinomycin D (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (EXP)

butanal (ISO)

Butylbenzyl phthalate (EXP)

camptothecin (ISO)

CGP 52608 (ISO)

chloroprene (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

cisplatin (ISO)

copper atom (EXP)

copper(0) (EXP)

Cuprizon (EXP)

cyclosporin A (ISO)

cyfluthrin (EXP)

cypermethrin (EXP)

DDE (ISO)

dibenz[a,h]anthracene (ISO)

dibutyl phthalate (EXP)

diethyl phthalate (EXP)

diisobutyl phthalate (EXP)

diisononyl phthalate (EXP)

doxorubicin (ISO)

ethanol (ISO)

etoposide (ISO)

fenpropathrin (EXP)

fenvalerate (EXP)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

lead(0) (ISO)

Licochalcone B (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

nitrofen (EXP)

Nutlin-3 (ISO)

ozone (ISO)

paracetamol (ISO)

paraquat (ISO)

pirinixic acid (ISO)

silicon dioxide (EXP,ISO)

sodium arsenite (ISO)

sodium atom (EXP)

sodium fluoride (ISO)

Soman (EXP)

sunitinib (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

titanium dioxide (ISO)

triclosan (ISO)

trimellitic anhydride (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

atrial cardiac muscle cell action potential (IEA,ISO)

cardiac conduction (ISO)

cardiac muscle cell action potential involved in contraction (IEA,ISO)

cardiac muscle contraction (IEA,ISO)

membrane depolarization (IEA,ISO)

membrane depolarization during action potential (IEA,ISO)

membrane depolarization during cardiac muscle cell action potential (IBA,IEA,ISO)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

nervous system development (IEP)

positive regulation of heart rate (IEA,ISO)

positive regulation of sodium ion transport (IEA,ISO)

protein localization to plasma membrane (IEA,ISO)

regulation of atrial cardiac muscle cell membrane depolarization (IEA,ISO)

regulation of heart rate by cardiac conduction (IBA,IEA,ISO)

regulation of ventricular cardiac muscle cell membrane depolarization (IEA,ISO)

SA node cell action potential (IEA,ISO)

sodium ion transmembrane transport (IBA,IEA,ISO)

sodium ion transport (IDA,IEA)

ventricular cardiac muscle cell action potential (IBA,IEA,ISO)

Cellular Component

monoatomic ion channel complex (IEA)

plasma membrane (IEA,ISO,ISS,TAS)

voltage-gated sodium channel complex (IBA,IEA,ISO)

Z disc (IEA,ISO)

Molecular Function

protein binding (ISO)

sodium channel activity (IEA)

sodium channel inhibitor activity (IBA)

sodium channel regulator activity (IEA,ISO)

transmembrane transporter binding (IBA,IEA,ISO)

voltage-gated sodium channel activity involved in cardiac muscle cell action potential (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Human neuronal changes in brain edema and increased intracranial pressure.	Faragó N, etal., Acta Neuropathol Commun. 2016 Aug 4;4(1):78. doi: 10.1186/s40478-016-0356-x.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	beta 3: an additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics.	Morgan K, etal., Proc Natl Acad Sci U S A 2000 Feb 29;97(5):2308-13.
6.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
7.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
8.	Differential modulation of sodium channel gating and persistent sodium currents by the beta1, beta2, and beta3 subunits.	Qu Y, etal., Mol Cell Neurosci 2001 Nov;18(5):570-80.
9.	GOA pipeline	RGD automated data pipeline
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Comprehensive gene review and curation	RGD comprehensive gene curation
13.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14.	Expression of auxiliary beta subunits of sodium channels in primary afferent neurons and the effect of nerve injury.	Takahashi N, etal., Neuroscience. 2003;121(2):441-50.
15.	Differential expression of neuronal voltage-gated sodium channel mRNAs during the development of the rat trigeminal ganglion.	Thun J, etal., Brain Res. 2009 May 7;1269:11-22. Epub 2009 Mar 6.

Additional References at PubMed

PMID:11470829	PMID:15178439	PMID:15489334	PMID:17884088	PMID:18158113	PMID:19351516	PMID:19796257	PMID:20042427	PMID:20226894	PMID:20675377	PMID:21051419	PMID:22871113
PMID:26528804

Genomics

Comparative Map Data

Scn3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	49,527,577 - 49,550,018 (+)	Ensembl				GRCr8
mRatBN7.2	8	40,630,372 - 40,652,869 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	40,630,455 - 40,652,868 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	46,138,136 - 46,160,555 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	44,416,727 - 44,439,130 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	42,284,327 - 42,306,725 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	44,136,413 - 44,159,011 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	44,136,496 - 44,159,010 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	61,379,751 - 61,402,348 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	43,231,453 - 43,254,066 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	40,246,442 - 40,268,779 (+)	NCBI		Celera
RGSC_v3.1	8	43,240,218 - 43,262,831 (+)	NCBI
Cytogenetic Map	8	q22	NCBI

SCN3B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	123,629,188 - 123,654,624 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	123,629,187 - 123,655,244 (-)	Ensembl			hg38	GRCh38
GRCh37	11	123,499,896 - 123,525,332 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	123,005,105 - 123,030,525 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	11	123,007,132 - 123,030,522	NCBI
Celera	11	120,659,315 - 120,684,712 (-)	NCBI		Celera
Cytogenetic Map	11	q24.1	NCBI
HuRef	11	119,441,120 - 119,466,515 (-)	NCBI		HuRef
CHM1_1	11	123,386,094 - 123,411,515 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	123,658,164 - 123,683,597 (-)	NCBI		T2T-CHM13v2.0

Scn3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	40,180,512 - 40,202,914 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	40,180,513 - 40,202,914 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	40,269,216 - 40,291,618 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	40,269,217 - 40,291,618 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	40,076,801 - 40,099,203 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	40,019,969 - 40,041,678 (+)	NCBI		MGSCv36	mm8
Celera	9	37,506,998 - 37,529,283 (+)	NCBI		Celera
Cytogenetic Map	9	A5.1	NCBI
cM Map	9	21.42	NCBI

Scn3b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	24,388,366 - 24,412,604 (-)	Ensembl
ChiLan1.0	NW_004955412	24,391,764 - 24,412,912 (-)	NCBI	ChiLan1.0	ChiLan1.0

SCN3B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	124,329,243 - 124,354,342 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	125,433,875 - 125,458,948 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	118,460,860 - 118,486,563 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	122,377,643 - 122,403,065 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	122,377,643 - 122,403,063 (-)	Ensembl			panPan2	panpan1.1

SCN3B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	10,783,235 - 10,808,342 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	10,783,325 - 10,804,242 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	10,839,227 - 10,864,324 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	10,733,388 - 10,758,535 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	10,734,206 - 10,759,133 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	10,837,530 - 10,862,647 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	10,768,079 - 10,793,209 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	10,814,475 - 10,839,652 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Scn3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	105,161,078 - 105,184,745 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	8,086,702 - 8,105,372 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	8,082,487 - 8,106,154 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCN3B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	50,508,880 - 50,583,712 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	50,508,194 - 50,532,432 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	55,796,544 - 55,873,092 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCN3B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	115,031,634 - 115,057,829 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	115,034,508 - 115,057,787 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	11,051,460 - 11,079,632 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scn3b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624880	1,496,634 - 1,516,684 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624880	1,496,571 - 1,519,728 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Scn3b
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	34,870,902 - 34,892,967 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Scn3b
119 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	410
Count of miRNA genes:	223
Interacting mature miRNAs:	301
Transcripts:	ENSRNOT00000009367
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2313057	Bss76	Bone structure and strength QTL 76	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	8	39106258	91341052	Rat
1298065	Scl16	Serum cholesterol level QTL 16	3.8		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39752803	84752803	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
2313067	Bss77	Bone structure and strength QTL 77	3.1	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	8	39106258	91341052	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	39106363	103375781	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
11556286	Cm81	Cardiac mass QTL 81		0.01	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	39106258	84106258	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	39106363	103375781	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
61464	Niddm11	Non-insulin dependent diabetes mellitus QTL 11	3.1	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	44477926	89477926	Rat
61337	Bp22	Blood pressure QTL 22	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	51589833	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	39106258	103375958	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat
2313088	Bss75	Bone structure and strength QTL 75	3.1	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	8	39106258	91341052	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	35464071	107982864	Rat
2302278	Gluco36	Glucose level QTL 36	4.2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	37760859	58991895	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	47541419	92541419	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
631648	Stl5	Serum triglyceride level QTL 5	4	0.0003	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	35464071	71842899	Rat
724514	Uae15	Urinary albumin excretion QTL 15	2.9		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	37760859	61459705	Rat
61353	Bp35	Blood pressure QTL 35		0.001	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	8	39106258	84106258	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
1359033	Bp273	Blood pressure QTL 273			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	84106258	Rat
61358	Bp39	Blood pressure QTL 39	2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	44447837	89447837	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	35464071	107982864	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
1331744	Bp217	Blood pressure QTL 217	3.398		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	39106258	67378345	Rat
2313046	Bss78	Bone structure and strength QTL 78	3.5	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	8	39106258	91341052	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	39106363	114525825	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	49245178	94245178	Rat
724540	Uae8	Urinary albumin excretion QTL 8	5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	8	39106258	103375958	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	35464071	107982864	Rat
1359021	Bp271	Blood pressure QTL 271	1.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	34125902	55607752	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	49245178	94245178	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
61373	Mcs4	Mammary carcinoma susceptibility QTL 4	1.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	8	44475043	89475043	Rat
70206	Alc20	Alcohol consumption QTL 20	2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	8	39106258	49610361	Rat

Markers in Region

RH133093

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	40,652,644 - 40,652,834 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	44,158,787 - 44,158,976	NCBI	Rnor6.0
Rnor_5.0	8	61,379,786 - 61,379,975	UniSTS	Rnor5.0
RGSC_v3.4	8	43,253,842 - 43,254,031	UniSTS	RGSC3.4
Celera	8	40,268,555 - 40,268,744	UniSTS
RH 3.4 Map	8	361.92	UniSTS
Cytogenetic Map	8	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	67	164	89	88	57	82	57	6	328	182	11	143	66	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_139097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039080819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063264915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF378093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJ243395	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC070899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000087022 ⟹ ENSRNOP00000071448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	49,527,577 - 49,550,018 (+)	Ensembl
mRatBN7.2 Ensembl	8	40,630,455 - 40,652,868 (+)	Ensembl
Rnor_6.0 Ensembl	8	44,136,496 - 44,159,010 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000158727 ⟹ ENSRNOP00000109471

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	49,527,578 - 49,549,521 (+)	Ensembl

RefSeq Acc Id:

NM_139097 ⟹ NP_620797

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,612 - 49,550,019 (+)	NCBI
mRatBN7.2	8	40,630,455 - 40,652,869 (+)	NCBI
Rnor_6.0	8	44,136,496 - 44,159,011 (+)	NCBI
Rnor_5.0	8	61,379,751 - 61,402,348 (-)	NCBI
RGSC_v3.4	8	43,231,453 - 43,254,066 (+)	RGD
Celera	8	40,246,442 - 40,268,779 (+)	RGD

Sequence:

show sequence

CACATTCAGCCACGGGGTGGCCCTGGAGAGGGACGGTTTTGACCACCTAATCGTCCAGCATCGG
GGCTTCGCAAGATCCAGGAACGCGCCCCACGGAAAGGGGTCCCTCGGTCTACCCATCCTCCACC
TCTGAGATCACCCACCCCACCGGAGGTCCCACCTCTTTCCACCCCTGAAGGACCTCCTGTGAGC
CCGGGACCCTGTGTACAGGACTGAAGTGGAACAAATTCTGTAGCCCAGACGACGGCTGGAGTGG
GGACACGCCCAACTGAAGAAGCCTGCCCCGCCGTAGAAGCCCGAGATCCTGAGTCTCGGTGGAT
TGAAGTCGTTGTCCCTGGGGGAGGCAAGAGCTTCAGAAATCGCTTACGGTGGAAAAGATGCCTG
CCTTCAACAGATTGCTTCCCCTAGCTTCTCTAGTGCTCATCTACTGGGTCAGAGTCTGCTTCCC
TGTGTGTGTGGAAGTACCCTCGGAGACAGAAGCGGTGCAGGGTAATCCCATGAAGCTGAGGTGC
ATCTCCTGCATGAAGAGGGAGGAGGTGGAGGCCACCACTGTGGTGGAGTGGTTCTACAGGCCTG
AGGGCGGTAAAGATTTCCTTATATATGAGTATCGGAATGGCCACCAGGAAGTGGAGAGCCCCTT
CCAAGGCCGTCTGCAGTGGAATGGGAGCAAAGACCTGCAGGACGTATCCATCACTGTACTCAAT
GTCACTTTGAATGACTCTGGCCTCTACACATGCAATGTGTCCAGGGAGTTCGAATTCGAGGCAC
ACAGGCCTTTTGTGAAGACCACGAGACTGATACCTTTGCGAGTCACTGAAGAGGCGGGAGAAGA
CTTCACCTCCGTGGTCTCGGAAATCATGATGTACATCCTCCTGGTCTTCCTCACCTTGTGGCTG
TTTATTGAGATGATCTATTGCTACAGAAAGGTCTCTAAGGCCGAAGAGGCAGCACAGGAAAATG
CGTCTGACTACCTTGCTATCCCTTCAGAGAACAAGGAGAACTCTGTGGTACCTGTGGAGGAATA
ATGTGGTGTGACTTGAGGTGATCTGAGTGCTGAGGGACTGGATATCCCCAGTTCAGTGATGCCA
GCAATATCAGGAAGTGCCCCAGGTGTCCCAACACATCCATCTTTTCTATTCATCAACCACCAAC
CCAATGTGAGATTTTCACCTGACTTCCGAACTCTATCAGAACTCTACACATCTTTACCTTGCCT
GAACCGAAGAGCCAACATCTATCTCTACACGGACTAAACCTCACTCTGTTCTTGCTTCCAACCA
AGTAACTCCCAACTTAACTAGAGTTGTTCCCTATGTTCCAAATGATTTAGACAAGTACTGGAGA
GTAGTATTACCTCTGCCCTGACTGTCTGTGACTGGGTCATTCTCCACTGCAGCAAAAGGATGGA
TATAAATCGGAAGAAAGCCCTGACTAGTTTGTCTTAAAGCCAAAGCGTGCCACGTACGTACTTT
GATTCATTGAAGTCAGTTTTTCCTGCTTCTCAGAGCGCCAGAAAGCAGCATGCCCCTAATGCTT
GCAGGGACATCATCTGTGTGCACTGGAACGCTTTCTGGAGCTCAGTGTTTGGAGGCTGTATCCC
CATAATCCTGAAGACCTGGAGCAAACCCAGAACTTCCAGGAAGTCCCAAGGAAGGATCCAGGAC
AGTTTCAGTAGGTCTCGAAAATGATATAACACACTCCTGATATTGGAAACATGGATGAGTGACC
TTTCTGGATTGAAACTCCTCAGTTCTTCATGTCTCAGTGTCTGTGGATCAGTATTAGTCCTCGT
TTTACAGGAGGAAACTGAGACTCACACAAGGCTGAACAGGACATTTAGGGGATTAAACTGGGCC
AGAGATGACTTTCCTGCCACCAACCTCACACTCCCTGGGATGAGAGGTATTTTTGAGGACTCTA
ACATTCAGCATGCCATTTGCCCAGCGGAAGCTGACTGCCACAGATCTGAGGAACTGGAAACCAG
GTAAGAAAACACAGACGGCATGAGATAGACTTCAGGATTTCACACAAAGATTTGTGAATCTGAA
GCATCCTCCAGGAGAGACGGCACCCGAGGGCAATATCTCTGTGATGAAAAATGGTTTTAGTCTG
AAATGGACAGTCAACAGAGAGACAAAGATGGGCGTGTAGCTTCTAAATACCTCACCTGTAGATG
TCACGTTTGGGTACTGGTGTTTGTAAAGTCCCCCACCTCTACCCTCATCCCCACCCAAGAGAAC
AGGGAACCAGTGACAAGATGCTTAGTCAATATCTCTTTTTAATGACTGTTCTAAATGCAATATT
CTTTAGCCCCTCCAGATAGCAAGGGCAGAAGGCCTTATGATGTATAAAAAGGTAAAAGTGAGAC
TCCATAGGAGAAATGTCCTCACCTCTGGGGAGATCTGTAAGAAAGAACATTCTCCACCCCTACC
TGGCTTTGTATGAAAAGCTCACCTTTCACTCCCAACATTTCCTTCTTGGTGGATGCCAGACATG
CGCTTTGGGAACCCCATCCCACCCTACCTTTATCTAGCTTGTTTATACATGGTGGCTTATCTGG
AATCACAATCGCATTTCCTTATAGGAGATCATGACTATAACCTACAAGGCACGGCACTCACCAG
CCAATTAAAATCTTTGCCATCTCCATTTCTTCCCATAATTCCACTTAGAATCCTGGACTAGACA
TGTGTGACTCTGGAGCCTTTCCTGGTGTGCTATGGCTTACTAAAGGGCTTAGAAGAGTTCTCAA
GGGCTATAATCATCCAGAAACCCCATTGTTTGTCTTGGTGCTGGGTATTTGCCCGGACTGATTC
TCAATAATTTACTGAAGGTCAAACTAAGCTGAGTCTAGTTTTCCCCTTATCCCTGCCTAACAGC
TGTGAACTTGGTTACTCAGTTGGTCCTGAGAGCATCTTGCCCTGTTGGCTTGGACGGTCAGCCA
GGGGTTGTTACCGAGCCCCAATCCCTAAGCGCTTGCTATCTCAGGCTTTACTTTCAATCTGTTT
ACACATTATTCTTTGGTTTCTCCACCCTCGGTCAACCGCACACCCCAGCTATCTTTTGAGTTTC
TGGGTTTGCTCTAGACATCGAAATAGAATTGCAAGTAGAAAGGGAACTTTCCAGAGCAAGATTA
TGCTGAGAACGACAGGGGTGAGGTTAAAAGGCGTTAGGGCTAAGGTGATAGCCCAGTGGGTAAA
ATGCTTGCCACCCAAGCGTGAGAGTCTCAGTGTGATCTCCAGAATCCATGTGAACAGACAGACA
TTGTGGCACACATTGGTCATCCCAGAGCTGGGGAGGCAGAGACAGGAAGATCTGAGCCTCACTA
ACCAGGCCACCTGGCCTAACTTACTTACTTGGCAAGCTCCAGGAGAGTGAGACGCTGTCTCAAA
AAAAAAAAAAACACAAATAAAAAAACCAACAAAGGTGGATAGTGCCTGAGGAATGACACCCGAG
GTTGACTTCTGGCCTCCACATATACATGTGCACAAGTTAAGGCCCATATTTATATTTACATAAA
GATGCACGTGAGCAATACACACACATACACACACACCGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGCTTCCTCTCACTTGTTTTAT
AAACGAAAAAGCCCTGGTTCTGTGACTTCACCCAGTCACTGCAAATGTATGTGACCAGGACCTT
GGAGTGCCTGCTTATCATTCTGACCATCCAATCCCATTGACTCAACGCTCTCTGTGTCAAGTAC
TAGGTTAGACTCTAGCTAGACCCCTTGGTCTTAGGCCTGTAGAAATGTGCACAGGCCCATGGTT
CCAATAAAGTCTCTCTGTTCGTGTCAATAAAGTATCTCTGAAGACCAAAAAAAAAAAAAAAAAA
AAAAAA

hide sequence

RefSeq Acc Id:

XM_006243102 ⟹ XP_006243164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI
mRatBN7.2	8	40,630,372 - 40,652,381 (+)	NCBI
Rnor_6.0	8	44,136,413 - 44,158,527 (+)	NCBI
Rnor_5.0	8	61,379,751 - 61,402,348 (-)	NCBI

Sequence:

show sequence

GGGGTGGGGAATGTGTGTCCAAGGGGGAGGGTCCGTAGCTACCAAGGCGGCCGAGTGCTGCCTG
CGCATGTCAAGGCTAGCAACACATTCAGCCACGGGGTGGCCCTGGAGAGGGACGGTTTTGACCA
CCTAATCGTCCAGCATCGGGGCTTCGCAAGATCCAGGAACGCGCCCCACGGAAAGGGGTCCCTC
GGTCTACCCATCCTCCACCTCTGAGATCACCCACCCCACCGGAGGTCCCACCTCTTTCCACCCC
TGAAGGACCTCCTGTGAGCCCGGGACCCTGTGTACAGGACTGAAGTGGAACAAATTCTGTAGCC
CAGACGACGGCTGGAGTGGGGACACGCCCAACTGAAGAAGCCTGCCCCGCCGTAGAAGCCCGAG
ATCCTGAGTCTCGGTGGATTGAAGTCGTTGTCCCTGGGGGAGGCAAGAGCTTCAGAAATCGCTT
ACGGTGGAAAAGATGCCTGCCTTCAACAGATTGCTTCCCCTAGCTTCTCTAGTGCTCATCTACT
GGGTCAGAGTCTGCTTCCCTGTGTGTGTGGAAGTACCCTCGGAGACAGAAGCGGTGCAGGGTAA
TCCCATGAAGCTGAGGTGCATCTCCTGCATGAAGAGGGAGGAGGTGGAGGCCACCACTGTGGTG
GAGTGGTTCTACAGGCCTGAGGGCGGTAAAGATTTCCTTATATATGAGTATCGGAATGGCCACC
AGGAAGTGGAGAGCCCCTTCCAAGGCCGTCTGCAGTGGAATGGGAGCAAAGACCTGCAGGACGT
ATCCATCACTGTACTCAATGTCACTTTGAATGACTCTGGCCTCTACACATGCAATGTGTCCAGG
GAGTTCGAATTCGAGGCACACAGGCCTTTTGTGAAGACCACGAGACTGATACCTTTGCGAGTCA
CTGAAGAGGCGGGAGAAGACTTCACCTCCGTGGTCTCGGAAATCATGATGTACATCCTCCTGGT
CTTCCTCACCTTGTGGCTGTTTATTGAGATGATCTATTGCTACAGAAAGGTCTCTAAGGCCGAA
GAGGCAGCACAGGAAAATGCGTCTGACTACCTTGCTATCCCTTCAGAGAACAAGGAGAACTCTG
TGGTACCTGTGGAGGAATAATGTGGTGTGACTTGAGGTGATGTACAGGCATCTGGGAGGGTAAG
GTGGATGTGGATGGCATGTCATACAAATGTTGTTTGCCATCTACAATAGAAGTGACTTTCTATT
TGGTCTCTTCTGCATAGCCATCCTGTCCTTTGGGTACTTTAAGTTATTGGTCAAATCATGATGC
CCTCCATTATGTCAAACCCTTCAGAAGCTGAATTACTTTGGCCTAGATATTGAGCAACCCAATT
CACTTGCTCATGATAACAAAGGCAAAATAATTCTCTCATTCCCCTCTTTAGTGTATGTGTATTT
GGGAATGGTTGCGCTGGACATTCTCAGTGAGTTCTTCTATTGTTGGTAGGTGATCTGAGTGCTG
AGGGACTGGATATCCCCAGTTCAGTGATGCCAGCAATATCAGGAAGTGCCCCAGGTGTCCCAAC
ACATCCATCTTTTCTATTCATCAACCACCAACCCAATGTGAGATTTTCACCTGACTTCCGAACT
CTATCAGAACTCTACACATCTTTACCTTGCCTGAACCGAAGAGCCAACATCTATCTCTACACGG
ACTAAACCTCACTCTGTTCTTGCTTCCAACCAAGTAACTCCCAACTTAACTAGAGTTGTTCCCT
ATGTTCCAAATGATTTAGACAAGTACTGGAGAGTAGTATTACCTCTGCCCTGACTGTCTGTGAC
TGGGTCATTCTCCACTGCAGCAAAAGGATGGATATAAATCGGAAGAAAGCCCTGACTAGTTTGT
CTTAAAGCCAAAGCGTGCCACGTACGTACTTTGATTCATTGAAGTCAGTTTTTCCTGCTTCTCA
GAGCGCCAGAAAGCAGCATGCCCCTAATGCTTGCAGGGACATCATCTGTGTGCACTGGAACGCT
TTCTGGAGCTCAGTGTTTGGAGGCTGTATCCCCATAATCCTGAAGACCTGGAGCAAACCCAGAA
CTTCCAGGAAGTCCCAAGGAAGGATCCAGGACAGTTTCAGTAGGTCTCGAAAATGATATAACAC
ACTCCTGATATTGGAAACATGGATGAGTGACCTTTCTGGATTGAAACTCCTCAGTTCTTCATGT
CTCAGTGTCTGTGGATCAGTATTAGTCCTCGTTTTACAGGAGGAAACTGAGACTCACACAAGGC
TGAACAGGACATTTAGGGGATTAAACTGGGCCAGAGATGACTTTCCTGCCACCAACCTCACACT
CCCTGGGATGAGAGGTATTTTTGAGGACTCTAACATTCAGCATGCCATTTGCCCAGCGGAAGCT
GACTGCCACAGATCTGAGGAACTGGAAACCAGGTAAGAAAACACAGACGGCATGAGATAGACTT
CAGGATTTCACACAAAGATTTGTGAATCTGAAGCATCCTCCAGGAGAGACGGCACCCGAGGGCA
ATATCTCTGTGATGAAAAATGGTTTTAGTCTGAAATGGACAGTCAACAGAGAGACAAAGATGGG
CGTGTAGCTTCTAAATACCTCACCTGTAGATGTCACGTTTGGGTACTGGTGTTTGTAAAGTCCC
CCACCTCTACCCTCATCCCCACCCAAGAGAACAGGGAACCAGTGACAAGATGCTTAGTCAATAT
CTCTTTTTAATGACTGTTCTAAATGCAATATTCTTTAGCCCCTCCAGATAGCAAGGGCAGAAGG
CCTTATGATGTATAAAAAGGTAAAAGTGAGACTCCATAGGAGAAATGTCCTCACCTCTGGGGAG
ATCTGTAAGAAAGAACATTCTCCACCCCTACCTGGCTTTGTATGAAAAGCTCACCTTTCACTCC
CAACATTTCCTTCTTGGTGGATGCCAGACATGCGCTTTGGGAACCCCATCCCACCCTACCTTTA
TCTAGCTTGTTTATACATGGTGGCTTATCTGGAATCACAATCGCATTTCCTTATAGGAGATCAT
GACTATAACCTACAAGGCACGGCACTCACCAGCCAATTAAAATCTTTGCCATCTCCATTTCTTC
CCATAATTCCACTTAGAATCCTGGACTAGACATGTGTGACTCTGGAGCCTTTCCTGGTGTGCTA
TGGCTTACTAAAGGGCTTAGAAGAGTTCTCAAGGGCTATAATCATCCAGAAACCCCATTGTTTG
TCTTGGTGCTGGGTATTTGCCCGGACTGATTCTCAATAATTTACTGAAGGTCAAACTAAGCTGA
GTCTAGTTTTCCCCTTATCCCTGCCTAACAGCTGTGAACTTGGTTACTCAGTTGGTCCTGAGAG
CATCTTGCCCTGTTGGCTTGGACGGTCAGCCAGGGGTTGTTACCGAGCCCCAATCCCTAAGCGC
TTGCTATCTCAGGCTTTACTTTCAATCTGTTTACACATTATTCTTTGGTTTCTCCACCCTCGGT
CAACCGCACACCCCAGCTATCTTTTGAGTTTCTGGGTTTGCTCTAGACATCGAAATAGAATTGC
AAGTAGAAAGGGAACTTTCCAGAGCAAGATTATGCTGAGAACGACAGGGGTGAGGTTAAAAGGC
GTTAGGGCTAAGGTGATAGCCCAGTGGGTAAAATGCTTGCCACCCAAGCGTGAGAGTCTCAGTG
TGATCTCCAGAATCCATGTGAACAGACAGACATTGTGGCACACATTGGTCATCCCAGAGCTGGG
GAGGCAGAGACAGGAAGATCTGAGCCTCACTAACCAGGCCACCTGGCCTAACTTACTTACTTGG
CAAGCTCCAGGAGAGTGAGACGCTGTCTCAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006243103 ⟹ XP_006243165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI
mRatBN7.2	8	40,630,372 - 40,652,381 (+)	NCBI
Rnor_6.0	8	44,136,413 - 44,158,527 (+)	NCBI
Rnor_5.0	8	61,379,751 - 61,402,348 (-)	NCBI

Sequence:

show sequence

GGGGTGGGGAATGTGTGTCCAAGGGGGAGGGTCCGTAGCTACCAAGGCGGCCGAGTGCTGCCTG
CGCATGTCAAGGCTAGCAACACATTCAGCCACGGGGTGGCCCTGGAGAGGGACGGTTTTGACCA
CCTAATCGTCCAGCATCGGGGCTTCGCAAGATCCAGGAACGCGCCCCACGGAAAGGGGTCCCTC
GGTCTACCCATCCTCCACCTCTGAGATCACCCACCCCACCGGAGGTCCCACCTCTTTCCACCCC
TGAAGGACCTCCTGTGAGCCCGGGACCCTGTGTACAGGACTGAAGTGGAACAAATTCTGTAGCC
CAGACGACGGCTGGAGTGGGGACACGCCCAACTGAAGAAGCCTGCCCCGCCGTAGAAGCCCGAG
ATCCTGAGTCTCGGTGGATTGAAGTCGTTGTCCCTGGGGGAGGCAAGAGCTTCAGAAATCGCTT
ACGGTGGAAAAGATGCCTGCCTTCAACAGATTGCTTCCCCTAGCTTCTCTAGTGCTCATCTACT
GGGTCAGAGTCTGCTTCCCTGTGTGTGTGGAAGTACCCTCGGAGACAGAAGCGGTGCAGGGTAA
TCCCATGAAGCTGAGGTGCATCTCCTGCATGAAGAGGGAGGAGGTGGAGGCCACCACTGTGGTG
GAGTGGTTCTACAGGCCTGAGGGCGGTAAAGATTTCCTTATATATGAGTATCGGAATGGCCACC
AGGAAGTGGAGAGCCCCTTCCAAGGCCGTCTGCAGTGGAATGGGAGCAAAGACCTGCAGGACGT
ATCCATCACTGTACTCAATGTCACTTTGAATGACTCTGGCCTCTACACATGCAATGTGTCCAGG
GAGTTCGAATTCGAGGCACACAGGCCTTTTGTGAAGACCACGAGACTGATACCTTTGCGAGTCA
CTGAAGAGGCGGGAGAAGACTTCACCTCCGTGGTCTCGGAAATCATGATGTACATCCTCCTGGT
CTTCCTCACCTTGTGGCTGTTTATTGAGATGATCTATTGCTACAGAAAGGTCTCTAAGGCCGAA
GAGGCAGCACAGGAAAATGCGTCTGACTACCTTGCTATCCCTTCAGAGAACAAGGAGAACTCTG
TGGTACCTGTGGAGGAATAATGTGGTGTGACTTGAGGTGATGTACAGGCATCTGGGAGGGTGAT
CTGAGTGCTGAGGGACTGGATATCCCCAGTTCAGTGATGCCAGCAATATCAGGAAGTGCCCCAG
GTGTCCCAACACATCCATCTTTTCTATTCATCAACCACCAACCCAATGTGAGATTTTCACCTGA
CTTCCGAACTCTATCAGAACTCTACACATCTTTACCTTGCCTGAACCGAAGAGCCAACATCTAT
CTCTACACGGACTAAACCTCACTCTGTTCTTGCTTCCAACCAAGTAACTCCCAACTTAACTAGA
GTTGTTCCCTATGTTCCAAATGATTTAGACAAGTACTGGAGAGTAGTATTACCTCTGCCCTGAC
TGTCTGTGACTGGGTCATTCTCCACTGCAGCAAAAGGATGGATATAAATCGGAAGAAAGCCCTG
ACTAGTTTGTCTTAAAGCCAAAGCGTGCCACGTACGTACTTTGATTCATTGAAGTCAGTTTTTC
CTGCTTCTCAGAGCGCCAGAAAGCAGCATGCCCCTAATGCTTGCAGGGACATCATCTGTGTGCA
CTGGAACGCTTTCTGGAGCTCAGTGTTTGGAGGCTGTATCCCCATAATCCTGAAGACCTGGAGC
AAACCCAGAACTTCCAGGAAGTCCCAAGGAAGGATCCAGGACAGTTTCAGTAGGTCTCGAAAAT
GATATAACACACTCCTGATATTGGAAACATGGATGAGTGACCTTTCTGGATTGAAACTCCTCAG
TTCTTCATGTCTCAGTGTCTGTGGATCAGTATTAGTCCTCGTTTTACAGGAGGAAACTGAGACT
CACACAAGGCTGAACAGGACATTTAGGGGATTAAACTGGGCCAGAGATGACTTTCCTGCCACCA
ACCTCACACTCCCTGGGATGAGAGGTATTTTTGAGGACTCTAACATTCAGCATGCCATTTGCCC
AGCGGAAGCTGACTGCCACAGATCTGAGGAACTGGAAACCAGGTAAGAAAACACAGACGGCATG
AGATAGACTTCAGGATTTCACACAAAGATTTGTGAATCTGAAGCATCCTCCAGGAGAGACGGCA
CCCGAGGGCAATATCTCTGTGATGAAAAATGGTTTTAGTCTGAAATGGACAGTCAACAGAGAGA
CAAAGATGGGCGTGTAGCTTCTAAATACCTCACCTGTAGATGTCACGTTTGGGTACTGGTGTTT
GTAAAGTCCCCCACCTCTACCCTCATCCCCACCCAAGAGAACAGGGAACCAGTGACAAGATGCT
TAGTCAATATCTCTTTTTAATGACTGTTCTAAATGCAATATTCTTTAGCCCCTCCAGATAGCAA
GGGCAGAAGGCCTTATGATGTATAAAAAGGTAAAAGTGAGACTCCATAGGAGAAATGTCCTCAC
CTCTGGGGAGATCTGTAAGAAAGAACATTCTCCACCCCTACCTGGCTTTGTATGAAAAGCTCAC
CTTTCACTCCCAACATTTCCTTCTTGGTGGATGCCAGACATGCGCTTTGGGAACCCCATCCCAC
CCTACCTTTATCTAGCTTGTTTATACATGGTGGCTTATCTGGAATCACAATCGCATTTCCTTAT
AGGAGATCATGACTATAACCTACAAGGCACGGCACTCACCAGCCAATTAAAATCTTTGCCATCT
CCATTTCTTCCCATAATTCCACTTAGAATCCTGGACTAGACATGTGTGACTCTGGAGCCTTTCC
TGGTGTGCTATGGCTTACTAAAGGGCTTAGAAGAGTTCTCAAGGGCTATAATCATCCAGAAACC
CCATTGTTTGTCTTGGTGCTGGGTATTTGCCCGGACTGATTCTCAATAATTTACTGAAGGTCAA
ACTAAGCTGAGTCTAGTTTTCCCCTTATCCCTGCCTAACAGCTGTGAACTTGGTTACTCAGTTG
GTCCTGAGAGCATCTTGCCCTGTTGGCTTGGACGGTCAGCCAGGGGTTGTTACCGAGCCCCAAT
CCCTAAGCGCTTGCTATCTCAGGCTTTACTTTCAATCTGTTTACACATTATTCTTTGGTTTCTC
CACCCTCGGTCAACCGCACACCCCAGCTATCTTTTGAGTTTCTGGGTTTGCTCTAGACATCGAA
ATAGAATTGCAAGTAGAAAGGGAACTTTCCAGAGCAAGATTATGCTGAGAACGACAGGGGTGAG
GTTAAAAGGCGTTAGGGCTAAGGTGATAGCCCAGTGGGTAAAATGCTTGCCACCCAAGCGTGAG
AGTCTCAGTGTGATCTCCAGAATCCATGTGAACAGACAGACATTGTGGCACACATTGGTCATCC
CAGAGCTGGGGAGGCAGAGACAGGAAGATCTGAGCCTCACTAACCAGGCCACCTGGCCTAACTT
ACTTACTTGGCAAGCTCCAGGAGAGTGAGACGCTGTCTCAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_017595466 ⟹ XP_017450955

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI
mRatBN7.2	8	40,630,372 - 40,652,381 (+)	NCBI
Rnor_6.0	8	44,136,413 - 44,158,527 (+)	NCBI

Sequence:

show sequence

GGGGTGGGGAATGTGTGTCCAAGGGGGAGGGTCCGTAGCTACCAAGGCGGCCGAGTGCTGCCTG
CGCATGTCAAGGCTAGCAACACATTCAGCCACGGGGTGGCCCTGGAGAGGGACGGTTTTGACCA
CCTAATCGTCCAGCATCGGGGCTTCGCAAGATCCAGGAACGCGCCCCACGGAAAGGGGTCCCTC
GGTCTACCCATCCTCCACCTCTGAGATCACCCACCCCACCGGAGGTCCCACCTCTTTCCACCCC
TGAAGGACCTCCTGTGAGCCCGGGACCCTGTGTACAGGACTGAAGTGGAACAAATTCTGTAGCC
CAGACGACGGCTGGAGTGGGGACACGCCCAACTGAAGAAGCCTGCCCCGCCGTAGAAGCCCGAG
ATCCTGAGTCTCGGTGGATTGAAGTCGTTGTCCCTGGGGGAGGCAAGAGCTTCAGAAATCGCTT
ACGGTGGAAAAGATGCCTGCCTTCAACAGATTGCTTCCCCTAGCTTCTCTAGTGCTCATCTACT
GGGGCTGAAATGTTTGAAGACAAGCCTGTTCTGTGTCCAAGTTCAGCATCCCATGCTCCCCGCA
TTGCTCCAGGTCTTGTGGTCTGGTCCTCTCAGCCACCTTGGTCAGAGTCTGCTTCCCTGTGTGT
GTGGAAGTACCCTCGGAGACAGAAGCGGTGCAGGGTAATCCCATGAAGCTGAGGTGCATCTCCT
GCATGAAGAGGGAGGAGGTGGAGGCCACCACTGTGGTGGAGTGGTTCTACAGGCCTGAGGGCGG
TAAAGATTTCCTTATATATGAGTATCGGAATGGCCACCAGGAAGTGGAGAGCCCCTTCCAAGGC
CGTCTGCAGTGGAATGGGAGCAAAGACCTGCAGGACGTATCCATCACTGTACTCAATGTCACTT
TGAATGACTCTGGCCTCTACACATGCAATGTGTCCAGGGAGTTCGAATTCGAGGCACACAGGCC
TTTTGTGAAGACCACGAGACTGATACCTTTGCGAGTCACTGAAGAGGCGGGAGAAGACTTCACC
TCCGTGGTCTCGGAAATCATGATGTACATCCTCCTGGTCTTCCTCACCTTGTGGCTGTTTATTG
AGATGATCTATTGCTACAGAAAGGTCTCTAAGGCCGAAGAGGCAGCACAGGAAAATGCGTCTGA
CTACCTTGCTATCCCTTCAGAGAACAAGGAGAACTCTGTGGTACCTGTGGAGGAATAATGTGGT
GTGACTTGAGGTGATGTACAGGCATCTGGGAGGGTAAGGTGGATGTGGATGGCATGTCATACAA
ATGTTGTTTGCCATCTACAATAGAAGTGACTTTCTATTTGGTCTCTTCTGCATAGCCATCCTGT
CCTTTGGGTACTTTAAGTTATTGGTCAAATCATGATGCCCTCCATTATGTCAAACCCTTCAGAA
GCTGAATTACTTTGGCCTAGATATTGAGCAACCCAATTCACTTGCTCATGATAACAAAGGCAAA
ATAATTCTCTCATTCCCCTCTTTAGTGTATGTGTATTTGGGAATGGTTGCGCTGGACATTCTCA
GTGAGTTCTTCTATTGTTGGTAGGTGATCTGAGTGCTGAGGGACTGGATATCCCCAGTTCAGTG
ATGCCAGCAATATCAGGAAGTGCCCCAGGTGTCCCAACACATCCATCTTTTCTATTCATCAACC
ACCAACCCAATGTGAGATTTTCACCTGACTTCCGAACTCTATCAGAACTCTACACATCTTTACC
TTGCCTGAACCGAAGAGCCAACATCTATCTCTACACGGACTAAACCTCACTCTGTTCTTGCTTC
CAACCAAGTAACTCCCAACTTAACTAGAGTTGTTCCCTATGTTCCAAATGATTTAGACAAGTAC
TGGAGAGTAGTATTACCTCTGCCCTGACTGTCTGTGACTGGGTCATTCTCCACTGCAGCAAAAG
GATGGATATAAATCGGAAGAAAGCCCTGACTAGTTTGTCTTAAAGCCAAAGCGTGCCACGTACG
TACTTTGATTCATTGAAGTCAGTTTTTCCTGCTTCTCAGAGCGCCAGAAAGCAGCATGCCCCTA
ATGCTTGCAGGGACATCATCTGTGTGCACTGGAACGCTTTCTGGAGCTCAGTGTTTGGAGGCTG
TATCCCCATAATCCTGAAGACCTGGAGCAAACCCAGAACTTCCAGGAAGTCCCAAGGAAGGATC
CAGGACAGTTTCAGTAGGTCTCGAAAATGATATAACACACTCCTGATATTGGAAACATGGATGA
GTGACCTTTCTGGATTGAAACTCCTCAGTTCTTCATGTCTCAGTGTCTGTGGATCAGTATTAGT
CCTCGTTTTACAGGAGGAAACTGAGACTCACACAAGGCTGAACAGGACATTTAGGGGATTAAAC
TGGGCCAGAGATGACTTTCCTGCCACCAACCTCACACTCCCTGGGATGAGAGGTATTTTTGAGG
ACTCTAACATTCAGCATGCCATTTGCCCAGCGGAAGCTGACTGCCACAGATCTGAGGAACTGGA
AACCAGGTAAGAAAACACAGACGGCATGAGATAGACTTCAGGATTTCACACAAAGATTTGTGAA
TCTGAAGCATCCTCCAGGAGAGACGGCACCCGAGGGCAATATCTCTGTGATGAAAAATGGTTTT
AGTCTGAAATGGACAGTCAACAGAGAGACAAAGATGGGCGTGTAGCTTCTAAATACCTCACCTG
TAGATGTCACGTTTGGGTACTGGTGTTTGTAAAGTCCCCCACCTCTACCCTCATCCCCACCCAA
GAGAACAGGGAACCAGTGACAAGATGCTTAGTCAATATCTCTTTTTAATGACTGTTCTAAATGC
AATATTCTTTAGCCCCTCCAGATAGCAAGGGCAGAAGGCCTTATGATGTATAAAAAGGTAAAAG
TGAGACTCCATAGGAGAAATGTCCTCACCTCTGGGGAGATCTGTAAGAAAGAACATTCTCCACC
CCTACCTGGCTTTGTATGAAAAGCTCACCTTTCACTCCCAACATTTCCTTCTTGGTGGATGCCA
GACATGCGCTTTGGGAACCCCATCCCACCCTACCTTTATCTAGCTTGTTTATACATGGTGGCTT
ATCTGGAATCACAATCGCATTTCCTTATAGGAGATCATGACTATAACCTACAAGGCACGGCACT
CACCAGCCAATTAAAATCTTTGCCATCTCCATTTCTTCCCATAATTCCACTTAGAATCCTGGAC
TAGACATGTGTGACTCTGGAGCCTTTCCTGGTGTGCTATGGCTTACTAAAGGGCTTAGAAGAGT
TCTCAAGGGCTATAATCATCCAGAAACCCCATTGTTTGTCTTGGTGCTGGGTATTTGCCCGGAC
TGATTCTCAATAATTTACTGAAGGTCAAACTAAGCTGAGTCTAGTTTTCCCCTTATCCCTGCCT
AACAGCTGTGAACTTGGTTACTCAGTTGGTCCTGAGAGCATCTTGCCCTGTTGGCTTGGACGGT
CAGCCAGGGGTTGTTACCGAGCCCCAATCCCTAAGCGCTTGCTATCTCAGGCTTTACTTTCAAT
CTGTTTACACATTATTCTTTGGTTTCTCCACCCTCGGTCAACCGCACACCCCAGCTATCTTTTG
AGTTTCTGGGTTTGCTCTAGACATCGAAATAGAATTGCAAGTAGAAAGGGAACTTTCCAGAGCA
AGATTATGCTGAGAACGACAGGGGTGAGGTTAAAAGGCGTTAGGGCTAAGGTGATAGCCCAGTG
GGTAAAATGCTTGCCACCCAAGCGTGAGAGTCTCAGTGTGATCTCCAGAATCCATGTGAACAGA
CAGACATTGTGGCACACATTGGTCATCCCAGAGCTGGGGAGGCAGAGACAGGAAGATCTGAGCC
TCACTAACCAGGCCACCTGGCCTAACTTACTTACTTGGCAAGCTCCAGGAGAGTGAGACGCTGT
CTCAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039080819 ⟹ XP_038936747

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI
mRatBN7.2	8	40,630,372 - 40,652,381 (+)	NCBI

RefSeq Acc Id:

XM_063264913 ⟹ XP_063120983

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI

RefSeq Acc Id:

XM_063264914 ⟹ XP_063120984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,527,529 - 49,550,019 (+)	NCBI

RefSeq Acc Id:

XM_063264915 ⟹ XP_063120985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	49,534,869 - 49,550,019 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_620797	(Get FASTA)	NCBI Sequence Viewer
	XP_006243164	(Get FASTA)	NCBI Sequence Viewer
	XP_006243165	(Get FASTA)	NCBI Sequence Viewer
	XP_017450955	(Get FASTA)	NCBI Sequence Viewer
	XP_038936747	(Get FASTA)	NCBI Sequence Viewer
	XP_063120983	(Get FASTA)	NCBI Sequence Viewer
	XP_063120984	(Get FASTA)	NCBI Sequence Viewer
	XP_063120985	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH70899	(Get FASTA)	NCBI Sequence Viewer
	AAK55415	(Get FASTA)	NCBI Sequence Viewer
	CAB76838	(Get FASTA)	NCBI Sequence Viewer
	EDL95223	(Get FASTA)	NCBI Sequence Viewer
	EDL95224	(Get FASTA)	NCBI Sequence Viewer
	EDL95225	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000071448
	ENSRNOP00000071448.1
	ENSRNOP00000109471
GenBank Protein	Q9JK00	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_620797 ⟸ NM_139097
- Peptide Label:	precursor
- UniProtKB:	Q9JK00 (UniProtKB/Swiss-Prot), A6J3Q2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFY RPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEF EAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQ ENASDYLAIPSENKENSVVPVEE hide sequence

RefSeq Acc Id:	XP_006243165 ⟸ XM_006243103
- Peptide Label:	isoform X1
- UniProtKB:	Q9JK00 (UniProtKB/Swiss-Prot), A6J3Q2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFY RPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEF EAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQ ENASDYLAIPSENKENSVVPVEE hide sequence

RefSeq Acc Id:	XP_006243164 ⟸ XM_006243102
- Peptide Label:	isoform X1
- UniProtKB:	Q9JK00 (UniProtKB/Swiss-Prot), A6J3Q2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPAFNRLLPLASLVLIYWVRVCFPVCVEVPSETEAVQGNPMKLRCISCMKREEVEATTVVEWFY RPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFEF EAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVFLTLWLFIEMIYCYRKVSKAEEAAQ ENASDYLAIPSENKENSVVPVEE hide sequence

RefSeq Acc Id:	XP_017450955 ⟸ XM_017595466
- Peptide Label:	isoform X2
- Sequence:	show sequence MKLRCISCMKREEVEATTVVEWFYRPEGGKDFLIYEYRNGHQEVESPFQGRLQWNGSKDLQDVS ITVLNVTLNDSGLYTCNVSREFEFEAHRPFVKTTRLIPLRVTEEAGEDFTSVVSEIMMYILLVF LTLWLFIEMIYCYRKVSKAEEAAQENASDYLAIPSENKENSVVPVEE hide sequence

Ensembl Acc Id:

ENSRNOP00000071448 ⟸ ENSRNOT00000087022

RefSeq Acc Id:	XP_038936747 ⟸ XM_039080819
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063120983 ⟸ XM_063264913
- Peptide Label:	isoform X1
- UniProtKB:	Q9JK00 (UniProtKB/Swiss-Prot), A6J3Q2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120984 ⟸ XM_063264914
- Peptide Label:	isoform X1
- UniProtKB:	Q9JK00 (UniProtKB/Swiss-Prot), A6J3Q2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063120985 ⟸ XM_063264915
- Peptide Label:	isoform X2

Ensembl Acc Id:

ENSRNOP00000109471 ⟸ ENSRNOT00000158727

Protein Domains

Ig-like Ig-like C2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9JK00-F1-model_v2	AlphaFold	Q9JK00	1-215	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621657	AgrOrtholog
BioCyc Gene	G2FUF-30844	BioCyc
Ensembl Genes	ENSRNOG00000057221	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000087022	ENTREZGENE
	ENSRNOT00000087022.2	UniProtKB/Swiss-Prot
	ENSRNOT00000158727	ENTREZGENE
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7100476	IMAGE-MGC_LOAD
InterPro	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_V-set	UniProtKB/Swiss-Prot
	Na_channel_b1/b3	UniProtKB/Swiss-Prot
KEGG Report	rno:245956	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91409	IMAGE-MGC_LOAD
NCBI Gene	245956	ENTREZGENE
PANTHER	PTHR10546	UniProtKB/Swiss-Prot
	PTHR10546:SF1	UniProtKB/Swiss-Prot
Pfam	V-set	UniProtKB/Swiss-Prot
PharmGKB	SCN3B	RGD
PhenoGen	Scn3b	PhenoGen
PROSITE	IG_LIKE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000057221	RatGTEx
SMART	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF48726	UniProtKB/Swiss-Prot
UniProt	A0ABK0LTM5_RAT	UniProtKB/TrEMBL
	A6J3Q2	ENTREZGENE, UniProtKB/TrEMBL
	Q9JK00	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Scn3b	sodium voltage-gated channel beta subunit 3	Scn3b	sodium channel, voltage-gated, type III, beta subunit	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2014-03-13	Scn3b	sodium channel, voltage-gated, type III, beta subunit	Scn3b	sodium channel, voltage-gated, type III, beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Scn3b	sodium channel, voltage-gated, type III, beta	Scnb3	sodium channel beta 3 subunit	Symbol and Name updated	1299863	APPROVED
2002-08-07	Scnb3	sodium channel beta 3 subunit			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_process	inactivates sodium channel opening more slowly than beta 1 subunit	633985

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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