Slc36a1 (solute carrier family 36 member 1)

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Gene: Slc36a1 (solute carrier family 36 member 1) Rattus norvegicus

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Symbol:

Slc36a1

Name:

solute carrier family 36 member 1

RGD ID:

619801

Description:

Enables neutral L-amino acid transmembrane transporter activity and proline:proton symporter activity. Involved in neutral amino acid transport and proton transmembrane transport. Located in lysosome and plasma membrane. Orthologous to human SLC36A1 (solute carrier family 36 member 1); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LYAAT-1; Lyaat1; lysosomal amino acid transporter 1; neutral amino acid/proton symporter; proton-coupled amino acid transporter 1; proton/amino acid transporter 1; solute carrier family 36 (proton/amino acid symporter), member 1; ysosomal amino acid transporter 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC36A1 (solute carrier family 36 member 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Slc36a1 (solute carrier family 36 (proton/amino acid symporter), member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC36A1 (solute carrier family 36 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC36A1 (solute carrier family 36 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc36a1 (solute carrier family 36 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC36A1 (solute carrier family 36 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC36A1 (solute carrier family 36 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc36a1 (solute carrier family 36 member 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	SLC36A2 (solute carrier family 36 member 2)	HGNC	OrthoDB
Alliance orthologs ³
Mus musculus (house mouse):	Slc36a1 (solute carrier family 36 (proton/amino acid symporter), member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SLC36A1 (solute carrier family 36 member 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc36a1 (solute carrier family 36 member 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG1139	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	AVT4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y43F4B.7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	skat-1	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	slc-36.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	slc-36.4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG13384	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	AVT3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG16700	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG7888	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG32079	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG32081	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	CG43693	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4991	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG8785	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	path	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	polyph	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	slc-36.3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	slc-36.5	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	slc36a1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,819,753 - 39,858,068 (+)	NCBI		GRCr8
mRatBN7.2	10	39,319,062 - 39,357,374 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,324,337 - 39,354,217 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	44,011,250 - 44,041,187 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,501,335 - 43,531,274 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,005,043 - 39,034,980 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,538,013 - 40,573,304 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,543,288 - 40,574,444 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	40,376,631 - 40,411,917 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	40,609,220 - 40,639,096 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	40,622,842 - 40,652,719 (+)	NCBI
Celera	10	38,661,746 - 38,691,578 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

familial adenomatous polyposis 1 (ISO)

Glycinuria with or without Oxalate Urolithiasis (ISO)

Hereditary Neoplastic Syndromes (ISO)

iminoglycinuria (ISO)

spinocerebellar ataxia 45 (ISO)

Stiff-Person syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

atrazine (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

choline (ISO)

chromium(6+) (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

dibenzo[a,l]pyrene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP,ISO)

dicrotophos (ISO)

dioxygen (ISO)

EC 3.4.15.1 (peptidyl-dipeptidase A) inhibitor (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethanol (EXP,ISO)

folic acid (ISO)

gentamycin (EXP)

glycine betaine (ISO)

L-methionine (ISO)

methyl methanesulfonate (ISO)

nickel atom (ISO)

paracetamol (ISO)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rac-lactic acid (ISO)

sevoflurane (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

tamibarotene (ISO)

tetrachloromethane (EXP,ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

trichloroethene (EXP)

tunicamycin (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

alanine transport (ISO)

amino acid import across plasma membrane (IEA,ISO)

glycine transport (IBA,IEA,ISO)

L-alanine transport (IBA,IEA,ISO)

neutral amino acid transport (IDA)

proline transmembrane transport (IBA,IEA)

proline transport (IEA,ISO)

proton transmembrane transport (IBA,IDA,IEA,ISO)

taurine transmembrane transport (IEA,ISO)

Cellular Component

apical plasma membrane (IEA)

endoplasmic reticulum (IEA,ISO)

lysosomal membrane (IEA)

lysosome (IDA)

membrane (IEA)

plasma membrane (IDA)

vacuolar membrane (IBA)

Molecular Function

alanine transmembrane transporter activity (ISO)

amino acid:proton symporter activity (IBA,IDA,ISO)

glycine transmembrane transporter activity (IBA,IEA,ISO)

L-alanine transmembrane transporter activity (IBA,IEA,ISO)

L-proline transmembrane transporter activity (IBA,IEA,ISO)

L-tyrosine transmembrane transporter activity (ISO)

neutral L-amino acid transmembrane transporter activity (IDA,NAS)

proline:proton symporter activity (IDA,IEA,ISO)

protein binding (ISO)

proton transmembrane transporter activity (IDA)

References

References - curated

#	Reference Title	Reference Citation
1.	Functional characterization of two novel mammalian electrogenic proton-dependent amino acid cotransporters.	Boll M, etal., J Biol Chem. 2002 Jun 21;277(25):22966-73. Epub 2002 Apr 16.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	GOA pipeline	RGD automated data pipeline
6.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
8.	Identification and characterization of a lysosomal transporter for small neutral amino acids.	Sagne C, etal., Proc Natl Acad Sci U S A 2001 Jun 19;98(13):7206-11.
9.	The H+-coupled electrogenic lysosomal amino acid transporter LYAAT1 localizes to the axon and plasma membrane of hippocampal neurons.	Wreden CC, etal., J Neurosci 2003 Feb 15;23(4):1265-75.

Additional References at PubMed

PMID:17897319	PMID:18496516	PMID:22234618	PMID:23962042	PMID:24016666	PMID:24222668

Genomics

Comparative Map Data

Slc36a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	39,819,753 - 39,858,068 (+)	NCBI		GRCr8
mRatBN7.2	10	39,319,062 - 39,357,374 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	39,324,337 - 39,354,217 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	44,011,250 - 44,041,187 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	43,501,335 - 43,531,274 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	39,005,043 - 39,034,980 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	40,538,013 - 40,573,304 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	40,543,288 - 40,574,444 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	40,376,631 - 40,411,917 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	40,609,220 - 40,639,096 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	40,622,842 - 40,652,719 (+)	NCBI
Celera	10	38,661,746 - 38,691,578 (+)	NCBI		Celera
Cytogenetic Map	10	q22	NCBI

SLC36A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	151,344,596 - 151,556,085 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	151,437,046 - 151,492,379 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	150,816,607 - 150,871,940 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	150,807,356 - 150,852,133 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	150,807,355 - 150,852,132	NCBI
Celera	5	146,908,547 - 146,953,349 (+)	NCBI		Celera
Cytogenetic Map	5	q33.1	NCBI
HuRef	5	145,972,551 - 146,017,337 (+)	NCBI		HuRef
CHM1_1	5	150,259,584 - 150,304,372 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	151,883,565 - 152,095,073 (+)	NCBI		T2T-CHM13v2.0

Slc36a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	55,095,148 - 55,127,156 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	55,095,176 - 55,127,156 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	55,204,322 - 55,236,330 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	55,204,350 - 55,236,330 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	55,017,842 - 55,049,832 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	55,047,793 - 55,077,327 (+)	NCBI		MGSCv36	mm8
Celera	11	59,792,999 - 59,825,044 (+)	NCBI		Celera
Cytogenetic Map	11	B1.3	NCBI
cM Map	11	32.33	NCBI

SLC36A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	146,675,263 - 146,885,743 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	144,802,621 - 145,025,288 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	146,870,427 - 147,080,893 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	152,862,371 - 152,983,143 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	152,874,114 - 152,919,034 (+)	Ensembl	panpan1.1		panPan2

SLC36A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	57,815,337 - 57,903,811 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	57,837,526 - 57,904,250 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	57,652,491 - 57,711,388 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	58,274,331 - 58,333,311 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	58,261,065 - 58,344,474 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	58,092,060 - 58,150,970 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	58,190,352 - 58,249,360 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	58,694,241 - 58,753,220 (-)	NCBI		UU_Cfam_GSD_1.0

Slc36a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	112,760,748 - 112,811,084 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936515	11,210,101 - 11,246,427 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936515	11,210,094 - 11,255,662 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC36A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	71,538,296 - 71,589,456 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	71,540,646 - 71,589,532 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	77,762,198 - 77,799,249 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC36A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	54,005,471 - 54,101,311 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	54,005,520 - 54,047,935 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	23,647,382 - 23,702,661 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc36a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	37,528,901 - 37,570,113 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	37,490,193 - 37,570,066 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc36a1
290 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	55
Count of miRNA genes:	50
Interacting mature miRNAs:	54
Transcripts:	ENSRNOT00000016755
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61441	Btemp1	Thermal response to stress QTL 1	4		body temperature trait (VT:0005535)	core body temperature (CMO:0001036)	10	35392457	63642539	Rat
9589136	Insul27	Insulin level QTL 27	10.46	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	10	11474010	56474010	Rat
152025229	Scl83	Serum cholesterol level QTL 83	4.33		blood cholesterol amount (VT:0000180)		10	35710580	68663659	Rat
1578779	Tcas10	Tongue tumor susceptibility QTL 10	3.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	10	31297439	76297439	Rat
631564	Apr3	Acute phase response QTL 3	3.9		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	10	15275955	60275955	Rat
1298069	Bp168	Blood pressure QTL 168	5.5		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	10	26521957	98003205	Rat
631554	Bp133	Blood pressure QTL 133		0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	743364	63851208	Rat
631557	Bp136	Blood pressure QTL 136		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	30632053	75632053	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1578761	Stresp21	Stress response QTL 21	3.3		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	6375746	51375746	Rat
2298544	Neuinf9	Neuroinflammation QTL 9	4.6		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	10	5801990	62146030	Rat
61332	Eau3	Experimental allergic uveoretinitis QTL 3		0.004	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	10	34490559	45579777	Rat
10401803	Kidm50	Kidney mass QTL 50			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	10	418344	45418344	Rat
1554317	Bmd4	Bone mineral density QTL 4	9.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	19816042	99406971	Rat
1598852	Anxrr19	Anxiety related response QTL 19	5.07		body movement coordination trait (VT:0005424)	number of rearing movements in an experimental apparatus (CMO:0001752)	10	18167841	63167841	Rat
1581497	Esta1	Estrogen-induced thymic atrophy QTL 1			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	10	21329805	61345413	Rat
2313095	Bss62	Bone structure and strength QTL 62	1.5	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
724527	Bp148	Blood pressure QTL 148		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	28453136	73453136	Rat
1358897	Stresp6	Stress response QTL 6	4.17	0.022	blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	35392267	64155584	Rat
1331762	Rf40	Renal function QTL 40	3.873		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	10	29299504	64155584	Rat
2300171	Bmd58	Bone mineral density QTL 58	4.9	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	10	26944628	71944628	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
2301967	Cm73	Cardiac mass QTL 73	4.55		heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	14487011	89062041	Rat
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
2313104	Bss61	Bone structure and strength QTL 61	0.9	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	10	5387014	50387014	Rat
9590310	Scort19	Serum corticosterone level QTL 19	6.3	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
10402859	Bp381	Blood pressure QTL 381		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
6893352	Bw100	Body weight QTL 100	0.33	0.6	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
724556	Pur2	Proteinuria QTL 2	5.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	22427500	90627625	Rat
8662860	Vetf10	Vascular elastic tissue fragility QTL 10			artery integrity trait (VT:0010639)	number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)	10	6154182	73453136	Rat
2313066	Bss63	Bone structure and strength QTL 63	1.4	0.0001	tibia strength trait (VT:1000284)	bone polar moment of inertia (CMO:0001558)	10	5387014	50387014	Rat
2313064	Bmd71	Bone mineral density QTL 71	0.9	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	10	5387014	50387014	Rat
70223	Bp57	Blood pressure QTL 57	5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	1	80676123	Rat
1354587	Kidm21	Kidney mass QTL 21	3.3		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	10	15028513	60430477	Rat
6893350	Bw99	Body weight QTL 99	0.87	0.16	body mass (VT:0001259)	body weight (CMO:0000012)	1	15906665	60906665	Rat
2317043	Aia7	Adjuvant induced arthritis QTL 7	3.82		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	37565079	82565079	Rat
70224	Eae3	Experimental allergic encephalomyelitis QTL 3	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	26521957	61345413	Rat
2317042	Aia20	Adjuvant induced arthritis QTL 20	3.38		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	37565079	82565079	Rat
2313081	Bss64	Bone structure and strength QTL 64	1.3	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	10	5387014	50387014	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
2313087	Bmd80	Bone mineral density QTL 80	3.2	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	10	19606483	64606483	Rat
1354614	Hpcl1	Hepatic cholesterol level QTL 1	3.3		liver cholesterol amount (VT:0010498)	liver cholesterol level (CMO:0001597)	10	35392267	51793994	Rat
631532	Cm50	Cardiac mass QTL 50	6.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	10	17907113	51786432	Rat
1576319	Cia29	Collagen induced arthritis QTL 29			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	33973921	78973921	Rat
7411611	Foco17	Food consumption QTL 17	18.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	10	1	42315980	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1600371	Mcs21	Mammary carcinoma susceptibility QTL 21	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	28875650	52200160	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
9590268	Scort13	Serum corticosterone level QTL 13	3.26	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	11474010	56474010	Rat
1576311	Pia26	Pristane induced arthritis QTL 26			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	31224026	75632053	Rat
61427	Cia16	Collagen induced arthritis QTL 16	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	6357896	96121100	Rat
2292441	Bp308	Blood pressure QTL 308			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	27606468	72606468	Rat
2313055	Bw96	Body weight QTL 96	3.6	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	10	19606483	64606483	Rat
631542	Bp82	Blood pressure QTL 82	6.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	26521957	98952741	Rat

Markers in Region

C14M90

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,327,017 - 39,327,058 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,545,969 - 40,546,009	NCBI	Rnor6.0
Rnor_5.0	10	40,384,582 - 40,384,622	UniSTS	Rnor5.0
RGSC_v3.4	10	40,611,894 - 40,611,934	UniSTS	RGSC3.4
Celera	10	38,664,418 - 38,664,458	UniSTS
Cytogenetic Map	10	q22	UniSTS

AW534070

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	39,354,123 - 39,354,310 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	40,573,077 - 40,573,263	NCBI	Rnor6.0
Rnor_5.0	10	40,411,690 - 40,411,876	UniSTS	Rnor5.0
RGSC_v3.4	10	40,639,003 - 40,639,189	UniSTS	RGSC3.4
Celera	10	38,691,485 - 38,691,671	UniSTS
RH 3.4 Map	10	419.0	UniSTS
Cytogenetic Map	10	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_130415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008767659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063268355	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC093965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF361239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016755 ⟹ ENSRNOP00000016755

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	39,324,337 - 39,354,217 (+)	Ensembl
Rnor_6.0 Ensembl	10	40,543,288 - 40,573,170 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087763 ⟹ ENSRNOP00000074412

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	39,334,064 - 39,354,217 (+)	Ensembl
Rnor_6.0 Ensembl	10	40,553,180 - 40,574,444 (+)	Ensembl

RefSeq Acc Id:

NM_130415 ⟹ NP_569099

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,825,035 - 39,854,911 (+)	NCBI
mRatBN7.2	10	39,324,344 - 39,354,217 (+)	NCBI
Rnor_6.0	10	40,543,295 - 40,573,170 (+)	NCBI
Rnor_5.0	10	40,376,631 - 40,411,917 (+)	NCBI
RGSC_v3.4	10	40,609,220 - 40,639,096 (+)	RGD
Celera	10	38,661,746 - 38,691,578 (+)	RGD

Sequence:

show sequence

GGCACGAGCCGGAAGCGGCTGTCCAGGAGGCTAAAAACCATGGCTAGGGGTCGGCGCTGAGGCT
GCGCGAGGTGGGCTGAGCGGGAGCCAGAGCGGGAGCCCGAGCCGGAGCCGGAGCCAGAGCCCGG
GCCGGGCCGGGCCGACCGCTACCATGTCCACACAGAGGCTTCGGAACGAAGACTATCATGACTA
CAGTTCCACTGACGTGAGCCCCGAGGAGAGCCCATCTGAAGGCCTCGGGAGCTTCTCCCCCGGC
TCCTACCAGCGCTTAGGAGAGAACAGTAGCATGACATGGTTCCAGACCCTGATCCACCTGCTAA
AAGGCAACATCGGCACCGGGCTGCTGGGGCTGCCTCTAGCAGTGAAGAATGCAGGCCTCTTGTT
GGGCCCTCTCAGCCTGCTGGTGATTGGCATCGTGGCTGTGCACTGCATGGGCATCCTGGTGAAG
TGCGCTCATCACTTGTGTCGGAGACTGAACAAACCCTTTCTGGACTATGGGGACACGGTGATGT
ATGGACTAGAATGCAGCCCCAGCACCTGGATTCGGAACCACTCCCACTGGGGAAGGCGCATCGT
GGACTTCTTCCTCGTCGTCACTCAGCTGGGTTTCTGCTGCGTCTACTTTGTGTTTCTGGCAGAC
AACTTTAAACAGGTGATAGAGGCAGCCAACGGGACCACCACCAACTGCAACAACAATGAGACCG
TGATCCTAACGCCCACCATGGACTCTCGACTCTACATGCTCACTTTCCTGCCCTTCCTGGTGCT
GCTGTCTTTCATCAGGAACTTGCGTATCTTGTCCATCTTCTCCCTGCTGGCCAACATCAGCATG
TTCGTCAGCCTTATCATGATATACCAGTTCATTGTCCAGAGGATCCCAGACCCCAGCCACCTCC
CCTTGGTGGCTCCATGGAAGACCTACCCTCTGTTCTTTGGCACAGCGATTTTTGCTTTCGAAGG
CATTGGAGTGGTGCTACCCCTTGAGAACAAAATGAAGGACTCACAGAAATTTCCACTGATCCTG
TATTTGGGGATGGCTATCATCACTGTGCTCTACATCAGCCTGGGGAGCCTGGGGTACCTGCAGT
TTGGAGCTGATATCAAGGGCAGCATCACACTCAACCTGCCCAACTGCTGGTTGTACCAGTCGGT
GAAGCTGCTGTACTCCATAGGCATCTTCTTCACGTATGCGCTCCAGTTTTATGTCGCAGCTGAG
ATCATCATCCCAGCCATTGTGTCCCGAGTGCCTGAACGTTTCGAGCTGGTGGTGGACCTCAGTG
CTCGCACTGCCATGGTCTGTGTGACATGTGTTCTGGCCGTCCTCATCCCCCGCCTGGACCTGGT
CATCTCCCTGGTGGGCTCTGTGAGCAGCAGCGCCCTGGCCCTCATCATCCCACCCCTGCTGGAG
GTGACCACCTACTATGGAGAGGGCATTAGTCCCCTGACCATCACCAAGGATGCCCTCATCAGCA
TCCTAGGCTTCGTGGGCTTCGTGGTGGGGACCTATGAGTCTCTGTGGGAGCTAATCCAGCCAAG
CCATAGCGACTCCTCTACCAATTCCACCAGTGCCTTCATATAAGGATCTGGGTGTGCTCCCTTT
ACCTGCCCAGCCCTACCCTGTGTGTCTCCCAGTAGTGTCCCACATCCTTAGGTGTGGCTCAGCC
TCTGGAAAAAGGCAGGGTTACTGCCTGGGCACTCCTCTGGCATTGGACCCTTGGGTAACCTGGG
CTACATGAGACAGATGAGGGGAGGGCAGGGAGCACCCTCCACTTGTGATGGTGCAGTCACTGCT
CCCCTTTATCATGCCTCCTCCTTCCTCGTGCC

hide sequence

RefSeq Acc Id:

XM_008767659 ⟹ XP_008765881

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,819,753 - 39,858,068 (+)	NCBI
mRatBN7.2	10	39,319,062 - 39,357,374 (+)	NCBI
Rnor_6.0	10	40,538,013 - 40,573,304 (+)	NCBI

Sequence:

show sequence

TCTTCAGCAGTGTCTTTTTCTGCTAGTTGGTCCTGAAGACTAAGAGGTCAGGAAGCTGTGGGCT
GAGCAAGAGGGTCTCTCACTGAACCTGAGTCCACTGTTTTGGCTAGATCAGTCAGTCTGCTGAA
GAGACTCAGGGATCCTTCTTCCTCTGGCCCCAAGCTCTGGTGACATGTCTGGCTTTTTTTATGT
ACTGGGAATCTTAACTCAGGTCCTTATTATACCCAGTAAACCATTTCCCTAGTATCCCCTTTTA
CATTTTTTTTGAAGCAAGGCATCTTTAAGTCACCCAAGCTATCCTTGAATTCACTCTGTAGCCC
AAACAGGCCTTGAACTATTTTTCTTCCCAGCGCTGGGATTGCACTCTTGTACCGGCAGGCCTGG
CGGCATGATTTTTTTTTCAAAAGATGCATATTTGGGATTATAAATCAGTACATGCACCTTGACA
TATGCTGCAAAAATAAAATTTAGCAAGGGTAAAAATCAGTGATATTTTGCATGCCGACTTCTCT
GGAGACTGCCTCAAAATCTTGGTCGCCCGCCCTTAGCTGTGGTGGTCTCAGCCCTGCCCTTTCT
GCAGCGGCGACGGGAGGCCGCCAGGTGGCACTGCAGAACAAGGATCCGGGAGGAGGAGCACGGA
GTGGAGCGGCACGTGACTTGGGCTCCGGAGCTAGCGTCACGTGACGGGGCCCGGAAGCGGCTGT
CCAGGAGGCTAAAAACCATGGCTAGGGGTCGGCGCTGAGGCTGCGCGAGGTGGGCTGAGCGGGA
GCCAGAGCGGGAGCCCGAGCCGGAGCCGGAGCCAGAGCCCGGGCCGGGCCGGGCCGACCGCTAC
CATGTCCACACAGAGGCTTCGGAACGAAGACTATCATGACTACAGTTCCACTGACGTGAGCCCC
GAGGAGAGCCCATCTGAAGGCCTCGGGAGCTTCTCCCCCGGCTCCTACCAGCGCTTAGGAGAGA
ACAGTAGCATGACATGGTTCCAGACCCTGATCCACCTGCTAAAAGGCAACATCGGCACCGGGCT
GCTGGGGCTGCCTCTAGCAGTGAAGAATGCAGGCCTCTTGTTGGGCCCTCTCAGCCTGCTGGTG
ATTGGCATCGTGGCTGTGCACTGCATGGGCATCCTGGTGAAGTGCGCTCATCACTTGTGTCGGA
GACTGAACAAACCCTTTCTGGACTATGGGGACACGGTGATGTATGGACTAGAATGCAGCCCCAG
CACCTGGATCCGGAACCACTCCCACTGGGGAAGGCGCATCGTGGACTTCTTCCTCGTCGTCACT
CAGCTGGGTTTCTGCTGCGTCTACTTTGTGTTTCTGGCAGACAACTTTAAACAGGTGATAGAGG
CAGCCAACGGGACCACCACCAACTGCAACAACAATGAGACCGTGATCCTAACGCCCACCATGGA
CTCTCGACTCTACATGCTCACTTTCCTGCCCTTCCTGGTGCTGCTGTCTTTCATCAGGAACTTG
CGTATCTTGTCCATCTTCTCCCTGCTGGCCAACATCAGCATGTTCGTCAGCCTTATCATGATAT
ACCAGTTCATTGTCCAGAGGATCCCAGACCCCAGCCACCTCCCCTTGGTGGCTCCATGGAAGAC
CTACCCTCTGTTCTTTGGCACAGCGATTTTTGCTTTCGAAGGCATTGGAGTGGTGCTACCCCTT
GAGAACAAAATGAAGGACTCACAGAAATTTCCACTGATCCTGTATTTGGGGATGGCTATCATCA
CTGTGCTCTACATCAGCCTGGGGAGCCTGGGGTACCTGCAGTTTGGAGCTGATATCAAGGGCAG
CATCACACTCAACCTGCCCAACTGCTGGTTGTACCAGTCGGTGAAGCTGCTGTACTCCATAGGC
ATCTTCTTCACGTATGCGCTCCAGTTTTATGTCGCAGCTGAGATCATCATCCCAGCCATTGTGT
CCCGAGTGCCTGAACGTTTCGAGCTGGTGGTGGACCTCAGTGCTCGCACTGCCATGGTCTGTGT
GACATGTGTTCTGGCCGTCCTCATCCCCCGCCTGGACCTGGTCATCTCCCTGGTGGGCTCTGTG
AGCAGCAGCGCCCTGGCCCTCATCATCCCACCCCTGCTGGAGGTGACCACCTACTATGGAGAGG
GCATTAGTCCCCTGACCATCACCAAGGATGCCCTCATCAGCATCCTAGGCTTCGTGGGCTTCGT
GGTGGGGACCTATGAGTCTCTGTGGGAGCTAATCCAGCCAAGCCATAGCGACTCCTCTACCAAT
TCCACCAGTGCCTTCATATAAGGATCTGGGTGTGCTCCCTTTACCTGCCCAGCCCTACCCTGTG
TGTCTCCCAGTAGTGTCCCACATCCTTAGGTGTGGCTCAGCCTCTGGAAAAAGGCAGGGTTACT
GCCTGGGCACTCCTCTGGCATTGGACCCTTGGGTAACCTGGGCTACATGAGACAGATGAGGGGA
GGGCAGGGAGCACCCTCCACTTGTGATGGTGCAGTCACTGCTCCCCTTTATCATGCCTCCTCCT
TCAGCACCACCCCAACCCCGTCTGACCTTCCACGCCTAAATTATTCCCCTTGCACAGCTCACTT
TATTTAAAAGGTAGTCTCCTGCTCCCAATGTCTTGATTCCTTTAGCTCTTAAAGAGAATGAGAT
GCTGCCCA

hide sequence

RefSeq Acc Id:

XM_063268355 ⟹ XP_063124425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	39,819,753 - 39,858,068 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_569099	(Get FASTA)	NCBI Sequence Viewer
	XP_008765881	(Get FASTA)	NCBI Sequence Viewer
	XP_063124425	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAK67316	(Get FASTA)	NCBI Sequence Viewer
	EDM04469	(Get FASTA)	NCBI Sequence Viewer
	EDM04470	(Get FASTA)	NCBI Sequence Viewer
	EDM04471	(Get FASTA)	NCBI Sequence Viewer
	EDM04472	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016755.3
	ENSRNOP00000074412.2
	ENSRNOP00055038820
	ENSRNOP00060040430
	ENSRNOP00065007029
GenBank Protein	Q924A5	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_569099 ⟸ NM_130415

- UniProtKB:

Q924A5 (UniProtKB/Swiss-Prot), A6HEL6 (UniProtKB/TrEMBL), A0A8L2R9L5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSTQRLRNEDYHDYSSTDVSPEESPSEGLGSFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGL
LGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPS
TWIRNHSHWGRRIVDFFLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMD
SRLYMLTFLPFLVLLSFIRNLRILSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKT
YPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGADIKGS
ITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIVSRVPERFELVVDLSARTAMVCV
TCVLAVLIPRLDLVISLVGSVSSSALALIIPPLLEVTTYYGEGISPLTITKDALISILGFVGFV
VGTYESLWELIQPSHSDSSTNSTSAFI

hide sequence

RefSeq Acc Id:	XP_008765881 ⟸ XM_008767659
- Peptide Label:	isoform X1
- UniProtKB:	Q924A5 (UniProtKB/Swiss-Prot), A6HEL6 (UniProtKB/TrEMBL), A0A8L2R9L5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSTQRLRNEDYHDYSSTDVSPEESPSEGLGSFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGL LGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPS TWIRNHSHWGRRIVDFFLVVTQLGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMD SRLYMLTFLPFLVLLSFIRNLRILSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKT YPLFFGTAIFAFEGIGVVLPLENKMKDSQKFPLILYLGMAIITVLYISLGSLGYLQFGADIKGS ITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVAAEIIIPAIVSRVPERFELVVDLSARTAMVCV TCVLAVLIPRLDLVISLVGSVSSSALALIIPPLLEVTTYYGEGISPLTITKDALISILGFVGFV VGTYESLWELIQPSHSDSSTNSTSAFI hide sequence

Ensembl Acc Id:

ENSRNOP00000074412 ⟸ ENSRNOT00000087763

Ensembl Acc Id:

ENSRNOP00000016755 ⟸ ENSRNOT00000016755

RefSeq Acc Id:	XP_063124425 ⟸ XM_063268355
- Peptide Label:	isoform X1
- UniProtKB:	Q924A5 (UniProtKB/Swiss-Prot), A6HEL6 (UniProtKB/TrEMBL)

Protein Domains

Amino acid transporter transmembrane

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q924A5-F1-model_v2	AlphaFold	Q924A5	1-475	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13697201

Promoter ID:

EPDNEW_R7725

Type:

initiation region

Name:

Slc36a1_1

Description:

solute carrier family 36 member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	10	40,543,307 - 40,543,367	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619801	AgrOrtholog
BioCyc Gene	G2FUF-25085	BioCyc
Ensembl Genes	ENSRNOG00000012356	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055027269	UniProtKB/Swiss-Prot
	ENSRNOG00060027930	UniProtKB/Swiss-Prot
	ENSRNOG00065006336	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016755.6	UniProtKB/Swiss-Prot
	ENSRNOT00000087763.2	UniProtKB/TrEMBL
	ENSRNOT00055047205	UniProtKB/Swiss-Prot
	ENSRNOT00060048515	UniProtKB/Swiss-Prot
	ENSRNOT00065009723	UniProtKB/Swiss-Prot
InterPro	AA_transpt_TM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:155205	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	155205	ENTREZGENE
PANTHER	AMINO ACID TRANSPORTER	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTON-COUPLED AMINO ACID TRANSPORTER 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Aa_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Slc36a1	PhenoGen
RatGTEx	ENSRNOG00000012356	RatGTEx
	ENSRNOG00055027269	RatGTEx
	ENSRNOG00060027930	RatGTEx
	ENSRNOG00065006336	RatGTEx
UniProt	A0A8L2R9L5	ENTREZGENE, UniProtKB/TrEMBL
	A6HEL6	ENTREZGENE, UniProtKB/TrEMBL
	Q924A5	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-03-09	Slc36a1	solute carrier family 36 member 1	Slc36a1	solute carrier family 36 (proton/amino acid symporter), member 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-09-10	Slc36a1	solute carrier family 36 (proton/amino acid symporter), member 1	Lyaat1	ysosomal amino acid transporter 1	Symbol and Name updated	1299863	APPROVED
2002-08-07	Lyaat1	ysosomal amino acid transporter 1			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_cellular_localization	localized to the plasma membrane of axonal processes and to lysosomes	633315

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar