SLC36A1 (solute carrier family 36 member 1) - Rat Genome Database

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Gene: SLC36A1 (solute carrier family 36 member 1) Canis lupus familiaris
Analyze
Symbol: SLC36A1
Name: solute carrier family 36 member 1
RGD ID: 12113487
Description: ENCODES a protein that exhibits alanine transmembrane transporter activity (ortholog); L-tyrosine transmembrane transporter activity (ortholog); neutral amino acid transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import across plasma membrane (ortholog); glycine transport (ortholog); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); spinocerebellar ataxia 45 (ortholog); FOUND IN endoplasmic reticulum (ortholog); lysosome (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: proton-coupled amino acid transporter 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,815,337 - 57,903,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,837,526 - 57,904,250 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,652,491 - 57,711,388 (-)NCBI
ROS_Cfam_1.0458,274,331 - 58,333,311 (-)NCBI
UMICH_Zoey_3.1458,092,060 - 58,150,970 (-)NCBI
UNSW_CanFamBas_1.0458,190,352 - 58,249,360 (-)NCBI
UU_Cfam_GSD_1.0458,694,241 - 58,753,220 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
SLC36A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,815,337 - 57,903,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,837,526 - 57,904,250 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,652,491 - 57,711,388 (-)NCBI
ROS_Cfam_1.0458,274,331 - 58,333,311 (-)NCBI
UMICH_Zoey_3.1458,092,060 - 58,150,970 (-)NCBI
UNSW_CanFamBas_1.0458,190,352 - 58,249,360 (-)NCBI
UU_Cfam_GSD_1.0458,694,241 - 58,753,220 (-)NCBI
SLC36A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl5151,437,046 - 151,492,379 (+)EnsemblGRCh38hg38GRCh38
GRCh385151,411,344 - 151,556,318 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh375150,816,607 - 150,871,940 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,807,356 - 150,852,133 (+)NCBINCBI36hg18NCBI36
Build 345150,807,355 - 150,852,132NCBI
Celera5146,908,547 - 146,953,349 (+)NCBI
Cytogenetic Map5q33.1NCBI
HuRef5145,972,551 - 146,017,337 (+)NCBIHuRef
CHM1_15150,259,584 - 150,304,372 (+)NCBICHM1_1
Slc36a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,095,148 - 55,127,156 (+)NCBIGRCm39mm39
GRCm39 Ensembl1155,095,176 - 55,127,156 (+)Ensembl
GRCm381155,204,322 - 55,236,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,204,350 - 55,236,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,017,842 - 55,049,832 (+)NCBIGRCm37mm9NCBIm37
MGSCv361155,047,793 - 55,077,327 (+)NCBImm8
Celera1159,792,999 - 59,825,044 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
Slc36a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21039,319,062 - 39,357,374 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1039,324,337 - 39,354,217 (+)Ensembl
Rnor_6.01040,538,013 - 40,573,304 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,543,288 - 40,574,444 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,376,631 - 40,411,917 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,609,220 - 40,639,096 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11040,622,842 - 40,652,719 (+)NCBI
Celera1038,661,746 - 38,691,578 (+)NCBICelera
Cytogenetic Map10q22NCBI
SLC36A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.15152,862,371 - 152,983,143 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,874,114 - 152,919,034 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v05146,870,427 - 147,080,893 (+)NCBIMhudiblu_PPA_v0panPan3
Slc36a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,760,748 - 112,811,084 (-)NCBI
SpeTri2.0NW_00493651511,210,094 - 11,255,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC36A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,540,642 - 71,607,421 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,540,646 - 71,589,532 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,762,198 - 77,799,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC36A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12354,005,471 - 54,101,311 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2354,005,520 - 54,047,935 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603423,647,382 - 23,702,661 (-)NCBIVero_WHO_p1.0
Slc36a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473337,490,193 - 37,570,066 (-)NCBIHetGla_female_1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 3 6 2
Low 2 5 22 6 6 6 6 6 6 6 10 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005619273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417781 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417783 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038473887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038534977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038599278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038663582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000028392   ⟹   ENSCAFP00000026406
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl457,837,526 - 57,904,250 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000063080   ⟹   ENSCAFP00000045701
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl457,845,813 - 57,904,250 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000073097   ⟹   ENSCAFP00000057299
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl457,856,217 - 57,904,250 (-)Ensembl
RefSeq Acc Id: XM_005619273   ⟹   XP_005619330
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1457,833,312 - 57,879,539 (-)NCBI
Dog10K_Boxer_Tasha457,652,491 - 57,698,641 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022417781   ⟹   XP_022273489
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1457,833,312 - 57,892,365 (-)NCBI
Dog10K_Boxer_Tasha457,652,491 - 57,711,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022417782   ⟹   XP_022273490
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1457,833,312 - 57,892,363 (-)NCBI
Dog10K_Boxer_Tasha457,652,491 - 57,711,388 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038473885   ⟹   XP_038329813
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,092,060 - 58,150,970 (-)NCBI
RefSeq Acc Id: XM_038473886   ⟹   XP_038329814
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,092,060 - 58,138,246 (-)NCBI
RefSeq Acc Id: XM_038473887   ⟹   XP_038329815
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1458,092,060 - 58,150,970 (-)NCBI
RefSeq Acc Id: XM_038534975   ⟹   XP_038390903
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0458,694,241 - 58,753,220 (-)NCBI
RefSeq Acc Id: XM_038534976   ⟹   XP_038390904
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0458,694,241 - 58,740,501 (-)NCBI
RefSeq Acc Id: XM_038534977   ⟹   XP_038390905
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0458,694,241 - 58,753,220 (-)NCBI
RefSeq Acc Id: XM_038599276   ⟹   XP_038455204
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0458,190,352 - 58,249,360 (-)NCBI
RefSeq Acc Id: XM_038599277   ⟹   XP_038455205
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0458,190,352 - 58,236,625 (-)NCBI
RefSeq Acc Id: XM_038599278   ⟹   XP_038455206
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0458,190,352 - 58,249,360 (-)NCBI
RefSeq Acc Id: XM_038663580   ⟹   XP_038519508
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,274,331 - 58,333,311 (-)NCBI
RefSeq Acc Id: XM_038663581   ⟹   XP_038519509
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,274,331 - 58,320,588 (-)NCBI
RefSeq Acc Id: XM_038663582   ⟹   XP_038519510
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0458,274,331 - 58,333,311 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005619330   ⟸   XM_005619273
- UniProtKB: E2RHF1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022273489   ⟸   XM_022417781
- Sequence:
RefSeq Acc Id: XP_022273490   ⟸   XM_022417782
- Sequence:
RefSeq Acc Id: ENSCAFP00000045701   ⟸   ENSCAFT00000063080
RefSeq Acc Id: ENSCAFP00000026406   ⟸   ENSCAFT00000028392
RefSeq Acc Id: ENSCAFP00000057299   ⟸   ENSCAFT00000073097
RefSeq Acc Id: XP_038329813   ⟸   XM_038473885
RefSeq Acc Id: XP_038329815   ⟸   XM_038473887
RefSeq Acc Id: XP_038329814   ⟸   XM_038473886
RefSeq Acc Id: XP_038455204   ⟸   XM_038599276
RefSeq Acc Id: XP_038455206   ⟸   XM_038599278
RefSeq Acc Id: XP_038455205   ⟸   XM_038599277
RefSeq Acc Id: XP_038519508   ⟸   XM_038663580
RefSeq Acc Id: XP_038519510   ⟸   XM_038663582
RefSeq Acc Id: XP_038519509   ⟸   XM_038663581
RefSeq Acc Id: XP_038390903   ⟸   XM_038534975
RefSeq Acc Id: XP_038390905   ⟸   XM_038534977
RefSeq Acc Id: XP_038390904   ⟸   XM_038534976

Promoters
RGD ID:13683015
Promoter ID:EPDNEW_C1083
Type:initiation region
Name:SLC36A1_1
Description:solute carrier family 36 member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1457,879,544 - 57,879,604EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024037 Ensembl
NCBI Gene SLC36A1 ENTREZGENE
UniProt E2RHF1 ENTREZGENE
VGNC ID VGNC:46382 ENTREZGENE