SLC36A1 (solute carrier family 36 member 1) - Rat Genome Database

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Gene: SLC36A1 (solute carrier family 36 member 1) Sus scrofa
Analyze
Symbol: SLC36A1
Name: solute carrier family 36 member 1
RGD ID: 13967996
Description: ENCODES a protein that exhibits L-tyrosine transmembrane transporter activity (ortholog); neutral L-amino acid transmembrane transporter activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN glycine transport (ortholog); L-alanine transport (ortholog); neutral amino acid transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); familial adenomatous polyposis 1 (ortholog); Glycinuria with or without Oxalate Urolithiasis (ortholog); FOUND IN lysosome (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proton-coupled amino acid transporter 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,538,296 - 71,589,456 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,540,646 - 71,589,532 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,762,198 - 77,799,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SLC36A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1671,538,296 - 71,589,456 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11671,540,646 - 71,589,532 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21677,762,198 - 77,799,249 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC36A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385151,344,596 - 151,556,085 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5151,437,046 - 151,492,379 (+)EnsemblGRCh38hg38GRCh38
GRCh375150,816,607 - 150,871,940 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365150,807,356 - 150,852,133 (+)NCBINCBI36Build 36hg18NCBI36
Build 345150,807,355 - 150,852,132NCBI
Celera5146,908,547 - 146,953,349 (+)NCBICelera
Cytogenetic Map5q33.1NCBI
HuRef5145,972,551 - 146,017,337 (+)NCBIHuRef
CHM1_15150,259,584 - 150,304,372 (+)NCBICHM1_1
T2T-CHM13v2.05151,883,565 - 152,095,073 (+)NCBIT2T-CHM13v2.0
Slc36a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,095,148 - 55,127,156 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,095,176 - 55,127,156 (+)EnsemblGRCm39 Ensembl
GRCm381155,204,322 - 55,236,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1155,204,350 - 55,236,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv371155,017,842 - 55,049,832 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361155,047,793 - 55,077,327 (+)NCBIMGSCv36mm8
Celera1159,792,999 - 59,825,044 (+)NCBICelera
Cytogenetic Map11B1.3NCBI
cM Map1132.33NCBI
Slc36a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81039,819,753 - 39,858,068 (+)NCBIGRCr8
mRatBN7.21039,319,062 - 39,357,374 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1039,324,337 - 39,354,217 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1044,011,250 - 44,041,187 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01043,501,335 - 43,531,274 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01039,005,043 - 39,034,980 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01040,538,013 - 40,573,304 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1040,543,288 - 40,574,444 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01040,376,631 - 40,411,917 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41040,609,220 - 40,639,096 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11040,622,842 - 40,652,719 (+)NCBI
Celera1038,661,746 - 38,691,578 (+)NCBICelera
Cytogenetic Map10q22NCBI
SLC36A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24146,675,263 - 146,885,743 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15144,802,621 - 145,025,288 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05146,870,427 - 147,080,893 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15152,862,371 - 152,983,143 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5152,874,114 - 152,919,034 (+)Ensemblpanpan1.1panPan2
SLC36A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1457,815,337 - 57,903,811 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl457,837,526 - 57,904,250 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha457,652,491 - 57,711,388 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0458,274,331 - 58,333,311 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl458,261,065 - 58,344,474 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1458,092,060 - 58,150,970 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0458,190,352 - 58,249,360 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0458,694,241 - 58,753,220 (-)NCBIUU_Cfam_GSD_1.0
Slc36a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213112,760,748 - 112,811,084 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651511,210,101 - 11,246,427 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651511,210,094 - 11,255,662 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC36A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12354,005,471 - 54,101,311 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2354,005,520 - 54,047,935 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603423,647,382 - 23,702,661 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc36a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473337,528,901 - 37,570,113 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473337,490,193 - 37,570,066 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC36A1
2083 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000031121   ⟹   ENSSSCP00000027890
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1671,552,916 - 71,589,456 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000039893   ⟹   ENSSSCP00000056869
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1671,538,296 - 71,589,453 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000061787   ⟹   ENSSSCP00000044666
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1671,548,483 - 71,589,455 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000080307   ⟹   ENSSSCP00000062111
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1671,540,642 - 71,607,421 (-)Ensembl
RefSeq Acc Id: XM_003134140   ⟹   XP_003134188
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11671,540,646 - 71,589,532 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077072   ⟹   XP_020932731
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11671,540,646 - 71,589,001 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021077073   ⟹   XP_020932732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11671,540,646 - 71,589,486 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003134188   ⟸   XM_003134140
- Peptide Label: isoform X1
- UniProtKB: A0A287BLC0 (UniProtKB/TrEMBL),   A0A8D1CWU8 (UniProtKB/TrEMBL),   A0A8D2BK21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932732   ⟸   XM_021077073
- Peptide Label: isoform X2
- UniProtKB: A0A8D1CWU8 (UniProtKB/TrEMBL),   A0A8D2BK21 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020932731   ⟸   XM_021077072
- Peptide Label: isoform X1
- UniProtKB: A0A287BLC0 (UniProtKB/TrEMBL),   A0A8D1CWU8 (UniProtKB/TrEMBL),   A0A8D2BK21 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000056869   ⟸   ENSSSCT00000039893
Ensembl Acc Id: ENSSSCP00000027890   ⟸   ENSSSCT00000031121
Ensembl Acc Id: ENSSSCP00000062111   ⟸   ENSSSCT00000080307
Ensembl Acc Id: ENSSSCP00000044666   ⟸   ENSSSCT00000061787
Protein Domains
Amino acid transporter transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035442 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015023453 UniProtKB/TrEMBL
  ENSSSCG00025036819 UniProtKB/TrEMBL
  ENSSSCG00030007981 UniProtKB/TrEMBL
  ENSSSCG00035048711 UniProtKB/TrEMBL
  ENSSSCG00040048473 UniProtKB/TrEMBL
  ENSSSCG00050055936 UniProtKB/TrEMBL
  ENSSSCG00060042000 UniProtKB/TrEMBL
  ENSSSCG00065033215 UniProtKB/TrEMBL
  ENSSSCG00070011484 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000031121.4 UniProtKB/TrEMBL
  ENSSSCT00000039893 ENTREZGENE
  ENSSSCT00000039893.3 UniProtKB/TrEMBL
  ENSSSCT00000061787.2 UniProtKB/TrEMBL
  ENSSSCT00015031285.1 UniProtKB/TrEMBL
  ENSSSCT00025050148.1 UniProtKB/TrEMBL
  ENSSSCT00030010749.1 UniProtKB/TrEMBL
  ENSSSCT00030010754.1 UniProtKB/TrEMBL
  ENSSSCT00030010764.1 UniProtKB/TrEMBL
  ENSSSCT00030010784.1 UniProtKB/TrEMBL
  ENSSSCT00035064899.1 UniProtKB/TrEMBL
  ENSSSCT00035064909.1 UniProtKB/TrEMBL
  ENSSSCT00040065426.1 UniProtKB/TrEMBL
  ENSSSCT00040065554.1 UniProtKB/TrEMBL
  ENSSSCT00040065645.1 UniProtKB/TrEMBL
  ENSSSCT00040065722.1 UniProtKB/TrEMBL
  ENSSSCT00050076300.1 UniProtKB/TrEMBL
  ENSSSCT00060056962.1 UniProtKB/TrEMBL
  ENSSSCT00060056969.1 UniProtKB/TrEMBL
  ENSSSCT00065045144.1 UniProtKB/TrEMBL
  ENSSSCT00070022407.1 UniProtKB/TrEMBL
  ENSSSCT00070022414.1 UniProtKB/TrEMBL
  ENSSSCT00070022417.1 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
KEGG Report ssc:100514926 UniProtKB/TrEMBL
NCBI Gene SLC36A1 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  PROTON-COUPLED AMINO ACID TRANSPORTER 1 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt A0A287AKY7_PIG UniProtKB/TrEMBL
  A0A287BLC0 ENTREZGENE, UniProtKB/TrEMBL
  A0A288CFT2_PIG UniProtKB/TrEMBL
  A0A4X1TNH5_PIG UniProtKB/TrEMBL
  A0A4X1TNI0_PIG UniProtKB/TrEMBL
  A0A8D0RUZ9_PIG UniProtKB/TrEMBL
  A0A8D1BXT0_PIG UniProtKB/TrEMBL
  A0A8D1CWU8 ENTREZGENE
  A0A8D1ETP5_PIG UniProtKB/TrEMBL
  A0A8D1KD85_PIG UniProtKB/TrEMBL
  A0A8D2BK21 ENTREZGENE, UniProtKB/TrEMBL
  I3LUT9_PIG UniProtKB/TrEMBL
UniProt Secondary K9J6I3 UniProtKB/TrEMBL
VGNC ID VGNC:93088 ENTREZGENE