Mir151b (microRNA 151b) - Rat Genome Database

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Gene: Mir151b (microRNA 151b) Rattus norvegicus
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Symbol: Mir151b
Name: microRNA 151b
RGD ID: 4888536
Description: Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Orthologous to human MIR151B (microRNA 151b); INTERACTS WITH bisphenol A; paracetamol (ortholog); progesterone (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 3586; microRNA mir-3586; Mir3586; rno-mir-3586
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87107,061,380 - 107,061,499 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7107,061,380 - 107,061,499 (+)EnsemblGRCr8
mRatBN7.27105,172,377 - 105,172,496 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7105,172,377 - 105,172,496 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7106,921,033 - 106,921,152 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07109,142,616 - 109,142,735 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07109,090,644 - 109,090,763 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd7109,080,878 - 109,080,997 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive7110,020,204 - 110,020,323 (+)NCBILyon_Normotensive
Lyon_Hypertensive7110,145,734 - 110,145,853 (+)NCBILyon_Hypertensive
F344_StmMcwi7108,599,568 - 108,599,687 (+)NCBIF344_StmMcwi
Rnor_6.07114,485,547 - 114,485,666 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7114,485,547 - 114,485,666 (+)Ensemblrn6Rnor6.0
Rnor_5.07114,421,107 - 114,421,226 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera7101,580,549 - 101,580,668 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16381832   PMID:20403161   PMID:33691558  


Genomics

Comparative Map Data
Mir151b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87107,061,380 - 107,061,499 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7107,061,380 - 107,061,499 (+)EnsemblGRCr8
mRatBN7.27105,172,377 - 105,172,496 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7105,172,377 - 105,172,496 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7106,921,033 - 106,921,152 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07109,142,616 - 109,142,735 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07109,090,644 - 109,090,763 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd7109,080,878 - 109,080,997 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive7110,020,204 - 110,020,323 (+)NCBILyon_Normotensive
Lyon_Hypertensive7110,145,734 - 110,145,853 (+)NCBILyon_Hypertensive
F344_StmMcwi7108,599,568 - 108,599,687 (+)NCBIF344_StmMcwi
Rnor_6.07114,485,547 - 114,485,666 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7114,485,547 - 114,485,666 (+)Ensemblrn6Rnor6.0
Rnor_5.07114,421,107 - 114,421,226 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera7101,580,549 - 101,580,668 (+)NCBICelera
Cytogenetic Map7q34NCBI
MIR151B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3814100,109,419 - 100,109,514 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl14100,109,419 - 100,109,514 (-)Ensemblhg38GRCh38
GRCh3714100,575,756 - 100,575,851 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map14q32.2NCBI
HuRef1480,757,946 - 80,758,041 (-)NCBIHuRef
CHM1_114100,513,494 - 100,513,589 (-)NCBICHM1_1
T2T-CHM13v2.01494,342,467 - 94,342,562 (-)NCBIT2T-CHM13v2.0

miRNA Target Status (No longer updated)

Predicted Targets
Summary Value
Count of predictions:7248
Count of gene targets:4779
Count of transcripts:5135
Interacting mature miRNAs:rno-miR-3586-3p, rno-miR-3586-5p
Prediction methods:Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1331723Bw25Body weight QTL 253.348body mass (VT:0001259)body weight (CMO:0000012)796700404111672180Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
2 9 8 27 25 27 8 17 8 2 62 36 15 8 13 19

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_037381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000053580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7107,061,380 - 107,061,499 (+)Ensembl
mRatBN7.2 Ensembl7105,172,377 - 105,172,496 (+)Ensembl
Rnor_6.0 Ensembl7114,485,547 - 114,485,666 (+)Ensembl
RefSeq Acc Id: NR_037381
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87107,061,380 - 107,061,499 (+)NCBI
mRatBN7.27105,172,377 - 105,172,496 (+)NCBI
Dahl_SR_JrHsd7109,080,878 - 109,080,997 (+)NCBI
Lyon_Normotensive7110,020,204 - 110,020,323 (+)NCBI
Lyon_Hypertensive7110,145,734 - 110,145,853 (+)NCBI
F344_StmMcwi7108,599,568 - 108,599,687 (+)NCBI
Rnor_6.07114,485,547 - 114,485,666 (+)NCBI
Rnor_5.07114,421,107 - 114,421,226 (+)NCBI
Celera7101,580,549 - 101,580,668 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:4888536 AgrOrtholog
BioCyc Gene G2FUF-33060 BioCyc
Ensembl Genes ENSRNOG00000035457 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053580 ENTREZGENE
miRBase MI0015461 ENTREZGENE
NCBI Gene 100526641 ENTREZGENE
PhenoGen Mir151b PhenoGen
RatGTEx ENSRNOG00000035457 RatGTEx
RNAcentral URS000075A120 RNACentral
  URS000075A7DA RNACentral
  URS000075CD4D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-22 Mir151b  microRNA 151b  Mir3586  microRNA 3586  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-08-15 Mir3586  microRNA 3586  Mir3586  microRNA mir-3586  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-11-23 Mir3586  microRNA mir-3586      Symbol and Name status set to provisional 70820 PROVISIONAL