H2az2 (H2A.Z variant histone 2) - Rat Genome Database

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Gene: H2az2 (H2A.Z variant histone 2) Rattus norvegicus
Analyze
Symbol: H2az2
Name: H2A.Z variant histone 2
RGD ID: 1587865
Description: Predicted to be a structural constituent of chromatin. Predicted to be involved in heterochromatin formation. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H2AZ2 (H2A.Z variant histone 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 4,4'-sulfonyldiphenol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H2A histone family, member V; H2A.Z-2; H2afv; LOC685909; similar to H2A histone family, member V isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,507,228 - 85,526,166 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1485,507,228 - 85,526,207 (-)EnsemblGRCr8
GRCr8 Ensembl1673,356,967 - 73,357,954 (+)EnsemblGRCr8
mRatBN7.21481,293,304 - 81,312,209 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,654,287 - 66,655,279 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl4151,153,132 - 151,153,518 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1481,293,299 - 81,312,144 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1485,694,227 - 85,713,500 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,934,027 - 86,953,299 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,383,623 - 83,402,893 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,687,782 - 86,706,639 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,687,782 - 86,706,626 (-)Ensemblrn6Rnor6.0
Rnor_5.01480,320,991 - 80,339,905 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41487,180,334 - 87,199,178 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1480,174,623 - 80,193,467 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
actinomycin D  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
captan  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
clofibrate  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP,ISO)
dicrotophos  (ISO)
diethyl maleate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
Enterolactone  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ivermectin  (ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
nefazodone  (EXP)
nicotine  (ISO)
nitrates  (ISO)
Nutlin-3  (ISO)
oxaliplatin  (EXP)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP)
picoxystrobin  (ISO)
progesterone  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
tamoxifen  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
tolcapone  (EXP)
topotecan  (EXP,ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
zinc sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromosome  (IEA)
nucleosome  (IBA,IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090   PMID:16457589   PMID:16791210   PMID:20003410   PMID:21630459   PMID:23533145  


Genomics

Comparative Map Data
H2az2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81485,507,228 - 85,526,166 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1485,507,228 - 85,526,207 (-)EnsemblGRCr8
GRCr8 Ensembl1673,356,967 - 73,357,954 (+)EnsemblGRCr8
mRatBN7.21481,293,304 - 81,312,209 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1666,654,287 - 66,655,279 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl4151,153,132 - 151,153,518 (-)EnsemblmRatBN7.2
mRatBN7.2 Ensembl1481,293,299 - 81,312,144 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1485,694,227 - 85,713,500 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01486,934,027 - 86,953,299 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01483,383,623 - 83,402,893 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01486,687,782 - 86,706,639 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1486,687,782 - 86,706,626 (-)Ensemblrn6Rnor6.0
Rnor_5.01480,320,991 - 80,339,905 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41487,180,334 - 87,199,178 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1480,174,623 - 80,193,467 (-)NCBICelera
Cytogenetic Map14q21NCBI
H2AZ2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38744,826,889 - 44,848,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl744,826,791 - 44,848,146 (-)Ensemblhg38GRCh38
GRCh37744,866,488 - 44,887,725 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36744,833,013 - 44,854,250 (-)NCBIBuild 36Build 36hg18NCBI36
Celera744,965,339 - 44,986,571 (-)NCBICelera
Cytogenetic Map7p13NCBI
HuRef744,751,981 - 44,773,197 (-)NCBIHuRef
CHM1_1744,870,854 - 44,892,091 (-)NCBICHM1_1
T2T-CHM13v2.0744,987,408 - 45,008,612 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2744,905,993 - 44,927,227 (-)NCBI
H2az2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39116,377,226 - 6,394,511 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl116,377,229 - 6,394,443 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38116,427,226 - 6,444,511 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl116,427,229 - 6,444,443 (-)Ensemblmm10GRCm38
MGSCv37116,327,229 - 6,344,446 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36116,328,022 - 6,344,442 (-)NCBIMGSCv36mm8
Celera116,913,952 - 6,931,156 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map114.01NCBI
LOC102016130
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554567,364,329 - 7,374,786 (+)NCBIChiLan1.0ChiLan1.0
LOC100974682
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2649,740,061 - 49,761,434 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1798,064,798 - 98,086,171 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0745,543,839 - 45,561,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1745,609,163 - 45,630,674 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl745,612,565 - 45,630,680 (-)EnsemblpanPan2panpan1.1
H2AZ2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha162,489,540 - 2,499,243 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01614,361,814 - 14,371,488 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1614,340,143 - 14,375,051 (+)EnsemblROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.01613,994,852 - 14,003,640 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01613,974,384 - 13,984,112 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101962450
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118100,490,319 - 100,503,178 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647819,702,914 - 19,714,897 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647819,702,914 - 19,714,898 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
H2AZ2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1850,533,429 - 50,552,392 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11850,533,382 - 50,548,341 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21855,305,989 - 55,314,885 (-)NCBISscrofa10.2Sscrofa10.2susScr3
H2AZ2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12113,829,359 - 13,843,069 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2113,829,330 - 13,842,796 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660628,693,291 - 8,708,095 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
LOC101713540
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247407,430,065 - 7,440,973 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247407,429,941 - 7,440,973 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
LOC116912530
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11175,356,582 - 75,374,063 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in H2az2
217 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147297021087582095Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143941117087582095Rat

Markers in Region
STS-W72744  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.23105,557,304 - 105,557,425 (+)MAPPERmRatBN7.2
mRatBN7.21880,610,266 - 80,610,384 (+)MAPPERmRatBN7.2
Rnor_6.01884,443,946 - 84,444,063NCBIRnor6.0
Rnor_6.03110,362,161 - 110,362,281NCBIRnor6.0
Rnor_5.01883,503,316 - 83,503,433UniSTSRnor5.0
Rnor_5.03116,906,812 - 116,906,932UniSTSRnor5.0
RGSC_v3.43105,056,989 - 105,057,109UniSTSRGSC3.4
RGSC_v3.41883,984,428 - 83,984,545UniSTSRGSC3.4
Celera1879,192,256 - 79,192,373UniSTS
Celera3104,474,311 - 104,474,431UniSTS
Cytogenetic Map18q13UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map3q35UniSTS
BF389745  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21481,302,784 - 81,302,912 (+)MAPPERmRatBN7.2
Rnor_6.01486,697,267 - 86,697,394NCBIRnor6.0
Rnor_5.01480,330,476 - 80,330,603UniSTSRnor5.0
RGSC_v3.41487,189,819 - 87,189,946UniSTSRGSC3.4
Celera1480,184,108 - 80,184,235UniSTS
RH 3.4 Map14577.0UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
21 13 82 214 91 90 59 158 59 6 485 283 22 192 114 124 31 34 34

Sequence


Ensembl Acc Id: ENSRNOT00000082893   ⟹   ENSRNOP00000073832
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,507,228 - 85,526,068 (-)Ensembl
mRatBN7.2 Ensembl1481,293,299 - 81,312,144 (-)Ensembl
Rnor_6.0 Ensembl1486,687,782 - 86,706,626 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000103545   ⟹   ENSRNOP00000083173
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,507,228 - 85,526,068 (-)Ensembl
mRatBN7.2 Ensembl1481,293,299 - 81,307,301 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117013   ⟹   ENSRNOP00000096932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4151,153,132 - 151,153,518 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117678   ⟹   ENSRNOP00000081591
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1481,294,488 - 81,311,886 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000164544   ⟹   ENSRNOP00000099147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1485,507,228 - 85,526,207 (-)Ensembl
RefSeq Acc Id: NM_001106019   ⟹   NP_001099489
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,507,228 - 85,526,068 (-)NCBI
mRatBN7.21481,293,304 - 81,312,145 (-)NCBI
Rnor_6.01486,687,782 - 86,706,626 (-)NCBI
Rnor_5.01480,320,991 - 80,339,905 (-)NCBI
RGSC_v3.41487,180,334 - 87,199,178 (-)RGD
Celera1480,174,623 - 80,193,467 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251387   ⟹   XP_006251449
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,508,412 - 85,525,594 (-)NCBI
mRatBN7.21481,294,488 - 81,311,821 (-)NCBI
Rnor_6.01486,688,971 - 86,706,416 (-)NCBI
Rnor_5.01480,320,991 - 80,339,905 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251388   ⟹   XP_006251450
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,508,412 - 85,525,598 (-)NCBI
mRatBN7.21481,294,488 - 81,311,754 (-)NCBI
Rnor_6.01486,688,971 - 86,706,425 (-)NCBI
Rnor_5.01480,320,991 - 80,339,905 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599381   ⟹   XP_017454870
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,508,412 - 85,526,112 (-)NCBI
mRatBN7.21481,294,488 - 81,312,177 (-)NCBI
Rnor_6.01486,688,971 - 86,706,639 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092453   ⟹   XP_038948381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81485,508,412 - 85,526,166 (-)NCBI
mRatBN7.21481,294,488 - 81,312,209 (-)NCBI
RefSeq Acc Id: NP_001099489   ⟸   NM_001106019
- UniProtKB: D4AEC0 (UniProtKB/TrEMBL),   A6IKU4 (UniProtKB/TrEMBL),   A0A0A0MXW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251450   ⟸   XM_006251388
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AR37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251449   ⟸   XM_006251387
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G659 (UniProtKB/TrEMBL),   A0A0A0MXW3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454870   ⟸   XM_017599381
- Peptide Label: isoform X3
- UniProtKB: A0A8I6ASE8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073832   ⟸   ENSRNOT00000082893
RefSeq Acc Id: XP_038948381   ⟸   XM_039092453
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AR37 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000083173   ⟸   ENSRNOT00000103545
Ensembl Acc Id: ENSRNOP00000081591   ⟸   ENSRNOT00000117678
Ensembl Acc Id: ENSRNOP00000096932   ⟸   ENSRNOT00000117013
Ensembl Acc Id: ENSRNOP00000099147   ⟸   ENSRNOT00000164544
Protein Domains
Histone H2A C-terminal   Histone H2A/H2B/H3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AEC0-F1-model_v2 AlphaFold D4AEC0 1-128 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699475
Promoter ID:EPDNEW_R9999
Type:multiple initiation site
Name:H2afv_1
Description:H2A histone family, member V
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01486,706,590 - 86,706,650EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1587865 AgrOrtholog
BioCyc Gene G2FUF-15088 BioCyc
Ensembl Genes ENSRNOG00000010306 UniProtKB/TrEMBL
  ENSRNOG00000038375 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000052275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000068631 Ensembl
Ensembl Transcript ENSRNOT00000013919 UniProtKB/TrEMBL
  ENSRNOT00000058436.5 UniProtKB/TrEMBL
  ENSRNOT00000082893 ENTREZGENE
  ENSRNOT00000082893.3 UniProtKB/TrEMBL
  ENSRNOT00000103545 ENTREZGENE
  ENSRNOT00000164544 ENTREZGENE
  ENSRNOT00000164544.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_core_D UniProtKB/TrEMBL
  Histone_H2A UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
  Histone_H2A_CS UniProtKB/TrEMBL
KEGG Report rno:685909 UniProtKB/TrEMBL
NCBI Gene 685909 ENTREZGENE
PANTHER PTHR23430 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
  Histone_H2A_C UniProtKB/TrEMBL
PhenoGen H2az2 PhenoGen
PRINTS HISTONEH2A UniProtKB/TrEMBL
PROSITE HISTONE_H2A UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010306 RatGTEx
  ENSRNOG00000038375 RatGTEx
  ENSRNOG00000052275 RatGTEx
  ENSRNOG00000068631 RatGTEx
SMART H2A UniProtKB/TrEMBL
Superfamily-SCOP Histone-fold UniProtKB/TrEMBL
UniProt A0A0A0MXW3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AR37 ENTREZGENE
  A0A8I6ASE8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G659 ENTREZGENE
  A0ABK0LBP2_RAT UniProtKB/TrEMBL
  A6IKU4 ENTREZGENE, UniProtKB/TrEMBL
  D4AEC0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-13 H2az2  H2A.Z variant histone 2  H2az2  H2A.Z variant histone 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-09-13 H2az2  H2A.Z variant histone 2  H2afv  H2A histone family, member V  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2014-10-03 H2afv  H2A histone family, member V  LOC685909  similar to H2A histone family, member V isoform 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC685909  similar to H2A histone family, member V isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL