H2AZ2 (H2A.Z variant histone 2) - Rat Genome Database

Name: H2AZ2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: H2AZ2 (H2A.Z variant histone 2) Canis lupus familiaris

Analyze

Symbol:

H2AZ2 (Ensembl: H2AFV)

Name:

H2A.Z variant histone 2

RGD ID:

12121394

Description:

ENCODES a protein that exhibits molecular adaptor activity (ortholog); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleosome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

H2A histone family, member V; H2AFV; histone H2A.V

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	16	2,489,540 - 2,499,243 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	14,361,814 - 14,371,488 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	14,340,143 - 14,375,051 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	16	13,994,852 - 14,003,640 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	13,974,384 - 13,984,112 (+)	NCBI		UU_Cfam_GSD_1.0

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

chromosome (IEA)

nucleosome (IEA,ISO)

nucleus (IEA)

Molecular Function

DNA binding (IEA)

molecular adaptor activity (ISO)

protein heterodimerization activity (IEA)

structural constituent of chromatin (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

H2AZ2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Dog10K_Boxer_Tasha	16	2,489,540 - 2,499,243 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	14,361,814 - 14,371,488 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	14,340,143 - 14,375,051 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UNSW_CanFamBas_1.0	16	13,994,852 - 14,003,640 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	13,974,384 - 13,984,112 (+)	NCBI		UU_Cfam_GSD_1.0

H2AZ2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	44,826,889 - 44,848,126 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	44,826,791 - 44,848,087 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	44,866,488 - 44,887,725 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	44,833,013 - 44,854,250 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	44,965,339 - 44,986,571 (-)	NCBI		Celera
Cytogenetic Map	7	p13	NCBI
HuRef	7	44,751,981 - 44,773,197 (-)	NCBI		HuRef
CHM1_1	7	44,870,854 - 44,892,091 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	44,987,408 - 45,008,612 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	44,905,993 - 44,927,227 (-)	NCBI

H2az2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	6,377,226 - 6,394,511 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	6,377,229 - 6,394,443 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	6,427,226 - 6,444,511 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	6,427,229 - 6,444,443 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	6,327,229 - 6,344,446 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	6,328,022 - 6,344,442 (-)	NCBI		MGSCv36	mm8
Celera	11	6,913,952 - 6,931,156 (-)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	4.01	NCBI

H2az2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	85,507,228 - 85,526,166 (-)	NCBI		GRCr8
mRatBN7.2	14	81,293,304 - 81,312,209 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	81,293,299 - 81,312,144 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	85,694,227 - 85,713,500 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	86,934,027 - 86,953,299 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	83,383,623 - 83,402,893 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	86,687,782 - 86,706,639 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	86,687,782 - 86,706,626 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	80,320,991 - 80,339,905 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	87,180,334 - 87,199,178 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	80,174,623 - 80,193,467 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

LOC102016130
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955456	7,364,329 - 7,374,786 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100974682
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	49,740,061 - 49,761,434 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	98,064,798 - 98,086,171 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	45,543,839 - 45,561,970 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	45,609,163 - 45,630,674 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	45,612,565 - 45,630,680 (-)	Ensembl	panpan1.1		panPan2

LOC101962450
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	100,490,319 - 100,503,178 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936478	19,702,914 - 19,714,897 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936478	19,702,914 - 19,714,898 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

H2AZ2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	50,533,429 - 50,552,392 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	50,533,382 - 50,548,341 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	55,305,989 - 55,314,885 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

H2AFV
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	13,829,359 - 13,843,069 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	13,829,330 - 13,842,796 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	8,693,291 - 8,708,095 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

LOC101713540
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	7,430,065 - 7,440,973 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	7,429,941 - 7,440,973 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium	5		16		6		6		12	8	10	6
Low		5	6	6		6		6
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014112036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014112037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014112038	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014112039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038525265	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038525266	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038525267	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038559536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038559537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038559538	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038559539	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038623594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038623595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038623596	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038689270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038689271	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038689272	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038689273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00845020154 ⟹ ENSCAFP00845015798

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,340,143 - 14,375,051 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020188 ⟹ ENSCAFP00845015825

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,340,143 - 14,371,059 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020219 ⟹ ENSCAFP00845015850

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,340,143 - 14,369,336 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020236 ⟹ ENSCAFP00845015863

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,340,143 - 14,368,721 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020247 ⟹ ENSCAFP00845015873

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,360,045 - 14,368,845 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020265 ⟹ ENSCAFP00845015884

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,361,061 - 14,368,845 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020306 ⟹ ENSCAFP00845015916

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,361,812 - 14,371,457 (+)	Ensembl

RefSeq Acc Id:

ENSCAFT00845020324 ⟹ ENSCAFP00845015929

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	16	14,361,900 - 14,369,751 (+)	Ensembl

RefSeq Acc Id:

XM_014112036 ⟹ XP_013967511

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	16	2,490,461 - 2,499,243 (-)	NCBI

Sequence:

show sequence

GGCCGGGGCGGCGCGAAGCGGGCACCGGTTATTGTCCGGGCTCCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGGGGTGGTGGTGGTCTGTGCTCCGGAGCGGCGGCTCTGCGGGAGCGAGGGCGGGAG
CGGCCGAGACCATGGCTGGAGGCAAAGCTGGAAAGGACAGTGGGAAGGCCAAGGCTAAGGCAGT
ATCTCGCTCCCAGAGAGCCGGGCTACAGTTTCCCGTGGGCCGCATCCACAGACATCTGAAGACT
CGCACCACCAGCCATGGAAGGGTCGGTGCCACGGCTGCTGTGTACAGCGCTGCGATTCTGGAGT
ACCTCACTGCAGAGGTGCTGGAGCTGGCAGGTAACGCTTCCAAGGACCTCAAGGTAAAGCGGAT
CACTCCGCGCCACTTGCAGCTTGCAATCCGCGGTGATGAAGAATTGGATTCTCTCATCAAGGCT
ACCATCGCTGGGGGTGGTATGGAAACCGAGGCTCACAGAAGTTCCTGTTCTCTGGAAGCCATTT
ATCTCGTAGACCGGAGACTGCGGGGCTGGGATACATGCTTAGATTTGGCTGACTCCACAGCCTC
CCTCTTACCTGGGATTAAAGTTAAATTTATCAGAGTTTTCTACTTTTACTTAAACTTCCAGCTT
TTAGTGGTCTTTTATTGCTACAGTAACACTCAGCAATTTGTGCCATATTTTTGAAACTATTTGA
CTTTGTTAGTTTCTAAGTAACTTGTAAGATTTAATTAATGTACCGATTAATGGTCCATCAGAAA
GTTCTATTTTTCTGCTTGGAAGTCTTCATTAAAAAAAGAAAATTTCTAAATGTTTTATAATGTA

hide sequence

RefSeq Acc Id:

XM_014112037 ⟹ XP_013967512

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	16	2,489,540 - 2,499,243 (-)	NCBI

Sequence:

show sequence

TGGCCGGGGCGGCGCGAAGCGGGCACCGGTTATTGTCCGGGCTCCGGCGGCGGCGGCGGCGGCG
GCGGCGGCGGGGGTGGTGGTGGTCTGTGCTCCGGAGCGGCGGCTCTGCGGGAGCGAGGGCGGGA
GCGGCCGAGACCATGGCTGGAGGCAAAGCTGGAAAGGACAGTGGGAAGGCCAAGGCTAAGGCAG
TATCTCGCTCCCAGAGAGCCGGGCTACAGGTGCTGGAGCTGGCAGGTAACGCTTCCAAGGACCT
CAAGGTAAAGCGGATCACTCCGCGCCACTTGCAGCTTGCAATCCGCGGTGATGAAGAATTGGAT
TCTCTCATCAAGGCTACCATCGCTGGGGGTGGTATGGAAACCGAGGCTCACAGAAGTTCCTGTT
CTCTGGAAGCCATTTATCTCGTAGACCGGAGACTGCGGGGCTGGGATACATGCTTAGATTTGGC
TGACTCCACAGCCTCCCTCTTACCTGGGATTAAAGTTAAATTTATCAGAGTTTTCTACTTTTAC
TTAAACTTCCAGCTTTTAGTGGTCTTTTATTGCTACAGTAACACTCAGCAATTTGTGCCATATT
TTTGAAACTATTTGACTTTGTTAGTTTCTAAGTAACTTGTAAGATTTAATTAATGTACCGATTA
ATGGTCCATCAGAAAGTTCTATTTTTCTGCTTGGAAGTCTTCATTAAAAAAAGAAAATTTCTAA
ATGTTTTATAATGTAGCACTATCAAAACAAAACTCTCATTTTTAAAAACTTATTTTTATTATGG
AAAATTTCAAAAATACAGAAAAATAAAGAGAATAGTATAATGAACCCCGGTGTACTCCTCCGAC
TTCCAGCAGTTATCCCGTGGTCAGCTGCGTTTTACCTGGATGCCCCTCGATCCCTCCTCCCAGT
GGATTATTGGTTTGAATCGTGTTTGAGCATGATTTATTTTCACATCTGCATACCTGCTAAGTCT
AATGCTGGGGCAATTTGGTCCATAGTCACAATCTTATTAACACAGCATTTGATAGATCAGGTCT
CCTCAGTATTCAGATTTTCCTATCAGCTGTTTACCGTTGGTTTGTTTGAATCAAGATCCAGACA
TGTTCTGTATCTTTTTTTTTTCTTTTAAGTCCTCCCTGCCCAGTGTGGGGCTGAAACTCACAAC
CCTGAGATTGAGAGTCGAGCACTCCCGCAACCCCACCAGCGGGCGTCCCAGCATGTTTTGTATC
TTATGTTTTGTTGATGCCTCTTGTCCCTTTTTAATGTATAAGCTTCTCTTCCCTGTTTGTTTTT
CTTATTTAATTTTTGAAGAAACTGTTGTTTTCCCTACAGATTTTACTAAATACACCCAAATGAT
ATTTAGATGTT

hide sequence

RefSeq Acc Id:

XM_014112038 ⟹ XP_013967513

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	16	2,491,368 - 2,499,243 (-)	NCBI

Sequence:

show sequence

GCCGGGGCGGCGCGAAGCGGGCACCGGTTATTGTCCGGGCTCCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGGGGTGGTGGTGGTCTGTGCTCCGGAGCGGCGGCTCTGCGGGAGCGAGGGCGGGAGC
GGCCGAGACCATGGCTGGAGGCAAAGCTGGAAAGGACAGTGGGAAGGCCAAGGCTAAGGCAGTA
TCTCGCTCCCAGAGAGCCGGGCTACAGTTTCCCGTGGGCCGCATCCACAGACATCTGAAGACTC
GCACCACCAGCCATGGAAGGGTCGGTGCCACGGCTGCTGTGTACAGCGCTGCGATTCTGGAGTA
CCTCACTGCAGAGGTGCTGGAGCTGGCAGGTAACGCTTCCAAGGACCTCAAGGTAAAGCGGATC
ACTCCGCGCCACTTGCAGCTTGCAATCCGCGGTGATGAAGAATTGGATTCTCTCATCAAGGCTA
CCATCGCTGGGGGTGGTGTGATCCCGCACATCCACAAGTCTCTGATTGGAAAGAAGGGACAGCA
GAAAACCGCTTAGAGCATTGTTTTACCCAACCCCTTCCTCCCCGTCATTGTACTGTAACTGGGA
CAGAAGAAATAATGGGGATATGTGGAATTTTTAAAAGAGGCGGATGGAAAAGCATAGACAATTA
CTGTAGACGTGATAAGAGATATTTGTACGTTCTTAGGCTCAAAGTTTGATAAAGTACCTTTCCA
TGTGGCAGCACTTGTGTGTTGATTGGCTAGGTTTCTCCCGTGTGTTTTATACAAAAATGGAATT
GATAAACCATTTTTTACAAAAATAA

hide sequence

RefSeq Acc Id:

XM_014112039 ⟹ XP_013967514

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	16	2,491,368 - 2,499,243 (-)	NCBI

Sequence:

show sequence

GGCCGGGGCGGCGCGAAGCGGGCACCGGTTATTGTCCGGGCTCCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGGGGTGGTGGTGGTCTGTGCTCCGGAGCGGCGGCTCTGCGGGAGCGAGGGCGGGAG
CGGCCGAGACCATGGCTGGAGGCAAAGCTGGAAAGGACAGTGGGAAGGCCAAGGCTAAGGCAGT
ATCTCGCTCCCAGAGAGCCGGGCTACAGGTGCTGGAGCTGGCAGGTAACGCTTCCAAGGACCTC
AAGGTAAAGCGGATCACTCCGCGCCACTTGCAGCTTGCAATCCGCGGTGATGAAGAATTGGATT
CTCTCATCAAGGCTACCATCGCTGGGGGTGGTGTGATCCCGCACATCCACAAGTCTCTGATTGG
AAAGAAGGGACAGCAGAAAACCGCTTAGAGCATTGTTTTACCCAACCCCTTCCTCCCCGTCATT
GTACTGTAACTGGGACAGAAGAAATAATGGGGATATGTGGAATTTTTAAAAGAGGCGGATGGAA
AAGCATAGACAATTACTGTAGACGTGATAAGAGATATTTGTACGTTCTTAGGCTCAAAGTTTGA
TAAAGTACCTTTCCATGTGGCAGCACTTGTGTGTTGATTGGCTAGGTTTCTCCCGTGTGTTTTA
TACAAAAATGGAATTGATAAACCATTTTTTACAAAAATAA

hide sequence

RefSeq Acc Id:

XM_038559536 ⟹ XP_038415464

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	16	13,974,384 - 13,983,191 (+)	NCBI

RefSeq Acc Id:

XM_038559537 ⟹ XP_038415465

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	16	13,974,384 - 13,984,112 (+)	NCBI

RefSeq Acc Id:

XM_038559538 ⟹ XP_038415466

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	16	13,974,384 - 13,982,284 (+)	NCBI

RefSeq Acc Id:

XM_038559539 ⟹ XP_038415467

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	16	13,974,384 - 13,982,284 (+)	NCBI

RefSeq Acc Id:

XM_038623594 ⟹ XP_038479522

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	16	13,994,852 - 14,003,640 (+)	NCBI

RefSeq Acc Id:

XM_038623595 ⟹ XP_038479523

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	16	13,994,852 - 14,002,733 (+)	NCBI

RefSeq Acc Id:

XM_038623596 ⟹ XP_038479524

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	16	13,994,852 - 14,002,733 (+)	NCBI

RefSeq Acc Id:

XM_038689270 ⟹ XP_038545198

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	16	14,361,814 - 14,370,567 (+)	NCBI

RefSeq Acc Id:

XM_038689271 ⟹ XP_038545199

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	16	14,361,814 - 14,371,488 (+)	NCBI

RefSeq Acc Id:

XM_038689272 ⟹ XP_038545200

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	16	14,361,814 - 14,369,660 (+)	NCBI

RefSeq Acc Id:

XM_038689273 ⟹ XP_038545201

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	16	14,361,814 - 14,369,660 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_013967511	(Get FASTA)	NCBI Sequence Viewer
	XP_013967512	(Get FASTA)	NCBI Sequence Viewer
	XP_013967513	(Get FASTA)	NCBI Sequence Viewer
	XP_013967514	(Get FASTA)	NCBI Sequence Viewer
	XP_038381193	(Get FASTA)	NCBI Sequence Viewer
	XP_038381194	(Get FASTA)	NCBI Sequence Viewer
	XP_038381195	(Get FASTA)	NCBI Sequence Viewer
	XP_038415464	(Get FASTA)	NCBI Sequence Viewer
	XP_038415465	(Get FASTA)	NCBI Sequence Viewer
	XP_038415466	(Get FASTA)	NCBI Sequence Viewer
	XP_038415467	(Get FASTA)	NCBI Sequence Viewer
	XP_038479522	(Get FASTA)	NCBI Sequence Viewer
	XP_038479523	(Get FASTA)	NCBI Sequence Viewer
	XP_038479524	(Get FASTA)	NCBI Sequence Viewer
	XP_038545198	(Get FASTA)	NCBI Sequence Viewer
	XP_038545199	(Get FASTA)	NCBI Sequence Viewer
	XP_038545200	(Get FASTA)	NCBI Sequence Viewer
	XP_038545201	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000070540.1
	ENSCAFP00000072608.1
	ENSCAFP00030010938.1
	ENSCAFP00030010956.1
	ENSCAFP00030010980.1
	ENSCAFP00030011005.1
	ENSCAFP00030011036.1
	ENSCAFP00040037009.1
	ENSCAFP00040037031.1
	ENSCAFP00040037109.1
	ENSCAFP00040037148.1
	ENSCAFP00040037173.1
	ENSCAFP00845015798.1
	ENSCAFP00845015825
	ENSCAFP00845015825.1
	ENSCAFP00845015850.1
	ENSCAFP00845015863.1
	ENSCAFP00845015873.1
	ENSCAFP00845015884.1
	ENSCAFP00845015916.1
	ENSCAFP00845015929.1

RefSeq Acc Id:	XP_038479522 ⟸ XM_038623594
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038479523 ⟸ XM_038623595
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038479524 ⟸ XM_038623596
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038545199 ⟸ XM_038689271
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038545198 ⟸ XM_038689270
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038545200 ⟸ XM_038689272
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MLN7 (UniProtKB/TrEMBL), A0A8I3NKM9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038545201 ⟸ XM_038689273
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0TN40 (UniProtKB/TrEMBL), A0A8C0R4A0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_013967512 ⟸ XM_014112037
- Peptide Label:	isoform X1
- Sequence:	show sequence MAGGKAGKDSGKAKAKAVSRSQRAGLQVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK ATIAGGGMETEAHRSSCSLEAIYLVDRRLRGWDTCLDLADSTASLLPGIKVKFIRVFYFYLNFQ LLVVFYCYSNTQQFVPYF hide sequence

RefSeq Acc Id:	XP_013967511 ⟸ XM_014112036
- Peptide Label:	isoform X2
- Sequence:	show sequence MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTA EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGMETEAHRSSCSLEAIYLVD RRLRGWDTCLDLADSTASLLPGIKVKFIRVFYFYLNFQLLVVFYCYSNTQQFVPYF hide sequence

RefSeq Acc Id:	XP_013967514 ⟸ XM_014112039
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0TN40 (UniProtKB/TrEMBL), A0A8C0R4A0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGGKAGKDSGKAKAKAVSRSQRAGLQVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK ATIAGGGVIPHIHKSLIGKKGQQKTA hide sequence

RefSeq Acc Id:	XP_013967513 ⟸ XM_014112038
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MLN7 (UniProtKB/TrEMBL), A0A8I3NKM9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTA EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA hide sequence

RefSeq Acc Id:	XP_038415465 ⟸ XM_038559537
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038415464 ⟸ XM_038559536
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038415466 ⟸ XM_038559538
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0MLN7 (UniProtKB/TrEMBL), A0A8I3NKM9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038415467 ⟸ XM_038559539
- Peptide Label:	isoform X4
- UniProtKB:	A0A8C0R4A0 (UniProtKB/TrEMBL), A0A8C0TN40 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845015884 ⟸ ENSCAFT00845020265

RefSeq Acc Id:

ENSCAFP00845015873 ⟸ ENSCAFT00845020247

RefSeq Acc Id:

ENSCAFP00845015825 ⟸ ENSCAFT00845020188

RefSeq Acc Id:

ENSCAFP00845015916 ⟸ ENSCAFT00845020306

RefSeq Acc Id:

ENSCAFP00845015798 ⟸ ENSCAFT00845020154

RefSeq Acc Id:

ENSCAFP00845015929 ⟸ ENSCAFT00845020324

RefSeq Acc Id:

ENSCAFP00845015863 ⟸ ENSCAFT00845020236

RefSeq Acc Id:

ENSCAFP00845015850 ⟸ ENSCAFT00845020219

Protein Domains

Histone H2A C-terminal Histone H2A/H2B/H3

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000052082	UniProtKB/TrEMBL
	ENSCAFG00030006635	UniProtKB/TrEMBL
	ENSCAFG00040022817	UniProtKB/TrEMBL
	ENSCAFG00845011363	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000098488.1	UniProtKB/TrEMBL
	ENSCAFT00000103086.1	UniProtKB/TrEMBL
	ENSCAFT00030012499.1	UniProtKB/TrEMBL
	ENSCAFT00030012518.1	UniProtKB/TrEMBL
	ENSCAFT00030012543.1	UniProtKB/TrEMBL
	ENSCAFT00030012572.1	UniProtKB/TrEMBL
	ENSCAFT00030012608.1	UniProtKB/TrEMBL
	ENSCAFT00040042427.1	UniProtKB/TrEMBL
	ENSCAFT00040042450.1	UniProtKB/TrEMBL
	ENSCAFT00040042543.1	UniProtKB/TrEMBL
	ENSCAFT00040042582.1	UniProtKB/TrEMBL
	ENSCAFT00040042612.1	UniProtKB/TrEMBL
	ENSCAFT00845020154.1	UniProtKB/TrEMBL
	ENSCAFT00845020188	ENTREZGENE
	ENSCAFT00845020188.1	UniProtKB/TrEMBL
	ENSCAFT00845020219.1	UniProtKB/TrEMBL
	ENSCAFT00845020236.1	UniProtKB/TrEMBL
	ENSCAFT00845020247.1	UniProtKB/TrEMBL
	ENSCAFT00845020265.1	UniProtKB/TrEMBL
	ENSCAFT00845020306.1	UniProtKB/TrEMBL
	ENSCAFT00845020324.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.20.10	UniProtKB/TrEMBL
InterPro	Histone-fold	UniProtKB/TrEMBL
	Histone_H2A	UniProtKB/TrEMBL
	Histone_H2A/H2B/H3	UniProtKB/TrEMBL
	Histone_H2A_C	UniProtKB/TrEMBL
	Histone_H2A_CS	UniProtKB/TrEMBL
NCBI Gene	H2AFV	ENTREZGENE
PANTHER	HISTONE H2A	UniProtKB/TrEMBL
	HISTONE H2A.V	UniProtKB/TrEMBL
	HISTONE H2A.V	UniProtKB/TrEMBL
	PTHR23430	UniProtKB/TrEMBL
Pfam	Histone	UniProtKB/TrEMBL
	Histone_H2A_C	UniProtKB/TrEMBL
PRINTS	HISTONEH2A	UniProtKB/TrEMBL
PROSITE	HISTONE_H2A	UniProtKB/TrEMBL
SMART	H2A	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47113	UniProtKB/TrEMBL
UniProt	A0A8C0MFQ1_CANLF	UniProtKB/TrEMBL
	A0A8C0MLN7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0R4A0	ENTREZGENE
	A0A8C0REA3_CANLF	UniProtKB/TrEMBL
	A0A8C0TGS4_CANLF	UniProtKB/TrEMBL
	A0A8C0TN40	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N835_CANLF	UniProtKB/TrEMBL
	A0A8I3N845_CANLF	UniProtKB/TrEMBL
	A0A8I3N965_CANLF	UniProtKB/TrEMBL
	A0A8I3NDF0_CANLF	UniProtKB/TrEMBL
	A0A8I3NIQ8_CANLF	UniProtKB/TrEMBL
	A0A8I3NKM9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NUI1_CANLF	UniProtKB/TrEMBL
	A0A8I3NUI8_CANLF	UniProtKB/TrEMBL
	A0A8P0PK85_CANLF	UniProtKB/TrEMBL
	A0A8P0PNF7_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:83697	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-11-05	H2AZ2	H2A.Z variant histone 2	H2AFV	H2A histone family, member V	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar