Akirin1 (akirin 1) - Rat Genome Database

Name: Akirin1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Akirin1 (akirin 1) Rattus norvegicus

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Symbol:

Akirin1

Name:

akirin 1

RGD ID:

1585989

Description:

Predicted to enable transcription coregulator activity. Predicted to be involved in several processes, including myoblast migration involved in skeletal muscle regeneration; negative regulation of satellite cell differentiation; and positive regulation of lamellipodium assembly. Predicted to be located in chromatin; nuclear membrane; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human AKIRIN1 (akirin 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

akirin-1; hypothetical protein LOC595134; LOC595134

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AKIRIN1 (akirin 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Akirin1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Akirin1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AKIRIN1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AKIRIN1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Akirin1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AKIRIN1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AKIRIN1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Akirin1 (akirin 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Akirin1 (akirin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AKIRIN1 (akirin 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	akirin1 (akirin 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	akir-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	akirin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	akirin1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	141,274,174 - 141,289,617 (-)	NCBI		GRCr8
mRatBN7.2	5	135,989,378 - 136,004,782 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	135,989,465 - 136,004,762 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	138,695,273 - 138,710,616 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	140,465,266 - 140,480,609 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	140,472,431 - 140,487,774 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	141,415,226 - 141,430,627 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	141,415,075 - 141,430,659 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	145,193,043 - 145,221,146 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	143,033,198 - 143,048,890 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	134,526,462 - 134,541,841 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Charcot-Marie-Tooth disease dominant intermediate C (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

acrylamide (EXP)

aflatoxin B1 (ISO)

alpha-pinene (ISO)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

chlorpyrifos (ISO)

dexamethasone (ISO)

diethylstilbestrol (ISO)

disodium selenite (ISO)

doxorubicin (ISO)

estriol (ISO)

fenthion (ISO)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

indometacin (ISO)

methimazole (EXP)

methotrexate (ISO)

methoxychlor (EXP)

N(4)-hydroxycytidine (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

propiconazole (ISO)

quercetin (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

thapsigargin (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

torcetrapib (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

uranium atom (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

myoblast migration involved in skeletal muscle regeneration (IBA,ISO)

negative regulation of satellite cell differentiation (ISO)

negative regulation of skeletal muscle satellite cell proliferation (IBA,ISO)

positive regulation of lamellipodium assembly (IBA,ISO)

positive regulation of macrophage chemotaxis (IBA,ISO)

positive regulation of myoblast differentiation (IBA,ISO)

positive regulation of transcription by RNA polymerase II (IBA,ISO)

Cellular Component

chromatin (IBA)

nuclear membrane (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA,ISO)

Molecular Function

protein binding (ISO)

transcription coregulator activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:18066067	PMID:18255059	PMID:19406121

Genomics

Comparative Map Data

Akirin1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	141,274,174 - 141,289,617 (-)	NCBI		GRCr8
mRatBN7.2	5	135,989,378 - 136,004,782 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	135,989,465 - 136,004,762 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	138,695,273 - 138,710,616 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	140,465,266 - 140,480,609 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	140,472,431 - 140,487,774 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	141,415,226 - 141,430,627 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	141,415,075 - 141,430,659 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	145,193,043 - 145,221,146 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	143,033,198 - 143,048,890 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	134,526,462 - 134,541,841 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

AKIRIN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	38,991,276 - 39,006,059 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	38,991,276 - 39,006,059 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	39,456,948 - 39,471,731 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	39,229,504 - 39,243,566 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	37,736,663 - 37,751,818 (+)	NCBI		Celera
Cytogenetic Map	1	p34.3	NCBI
HuRef	1	37,576,957 - 37,591,791 (+)	NCBI		HuRef
CHM1_1	1	39,572,291 - 39,587,109 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	38,858,494 - 38,873,280 (+)	NCBI		T2T-CHM13v2.0

Akirin1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	123,628,988 - 123,644,092 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	123,628,352 - 123,644,138 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	123,735,195 - 123,750,299 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	123,734,559 - 123,750,345 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	123,412,438 - 123,427,542 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	123,237,498 - 123,252,602 (-)	NCBI		MGSCv36	mm8
Celera	4	122,063,806 - 122,078,914 (-)	NCBI		Celera
Cytogenetic Map	4	D2.2	NCBI
cM Map	4	57.42	NCBI

Akirin1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	16,607,980 - 16,624,376 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	16,607,980 - 16,624,376 (+)	NCBI	ChiLan1.0	ChiLan1.0

AKIRIN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	187,828,530 - 187,843,196 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	186,966,190 - 186,980,837 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	38,269,096 - 38,283,920 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	39,615,879 - 39,631,132 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	39,616,036 - 39,629,300 (+)	Ensembl	panpan1.1		panPan2

AKIRIN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	3,759,559 - 3,771,651 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	3,763,374 - 3,771,551 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	3,997,567 - 4,009,698 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	3,881,467 - 3,893,614 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	3,881,470 - 3,893,641 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	3,748,978 - 3,761,096 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	3,816,581 - 3,828,699 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	3,831,983 - 3,844,112 (-)	NCBI		UU_Cfam_GSD_1.0

Akirin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	55,150,620 - 55,167,407 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	20,975,350 - 20,992,518 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	20,975,401 - 20,992,184 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AKIRIN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	94,891,363 - 94,905,662 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	94,891,409 - 94,902,700 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	87,939,895 - 87,952,590 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AKIRIN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	93,884,495 - 93,904,217 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	93,881,394 - 93,904,171 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	22,935,470 - 22,948,425 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Akirin1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	21,579,734 - 21,595,689 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	21,579,852 - 21,595,689 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Akirin1
60 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	205
Count of miRNA genes:	144
Interacting mature miRNAs:	174
Transcripts:	ENSRNOT00000034944
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	97059760	147465714	Rat
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	40128307	148607290	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	111416838	156416838	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
1300122	Wbc1	White blood cell count QTL 1	2.75		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	5	125392826	139989768	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	94858972	143070159	Rat
70156	Niddm30	Non-insulin dependent diabetes mellitus QTL 30	3.98		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	5	129132447	151006154	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	129132428	143070159	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	106906205	151906205	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	106906205	151906205	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	106906205	151906205	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	97570330	136479578	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	120740824	143608494	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	108938288	153938288	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	50328551	141643988	Rat
1641912	Alcrsp18	Alcohol response QTL 18			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	5	35189153	141643988	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	105999803	150999803	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	108845856	153845856	Rat
2293642	Bss37	Bone structure and strength QTL 37	4.64	0.0001	femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	120740824	151018848	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
1578673	Bmd13	Bone mineral density QTL 13	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	5	103689353	148689353	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	111416838	156416838	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	106906205	151906205	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	106906205	151906205	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	111416838	156416838	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	69540295	151018848	Rat
61426	Scl2	Serum cholesterol level QTL 2	7.3	0.001	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	59793399	143070159	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	111416838	156416838	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	108845856	153845856	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
7411722	Strs6	Sensitivity to stroke QTL 6	3.9		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	5	134972980	138113556	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	99216724	148607142	Rat

Markers in Region

RH127820

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	135,989,348 - 135,989,561 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	141,415,197 - 141,415,409	NCBI	Rnor6.0
Rnor_5.0	5	145,205,716 - 145,205,928	UniSTS	Rnor5.0
Rnor_5.0	5	145,193,168 - 145,193,380	UniSTS	Rnor5.0
RGSC_v3.4	5	143,033,169 - 143,033,381	UniSTS	RGSC3.4
Celera	5	134,526,433 - 134,526,645	UniSTS
RH 3.4 Map	5	890.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH130590

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	135,989,537 - 135,989,754 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	141,415,386 - 141,415,602	NCBI	Rnor6.0
Rnor_5.0	5	145,205,905 - 145,206,121	UniSTS	Rnor5.0
Rnor_5.0	5	145,193,357 - 145,193,573	UniSTS	Rnor5.0
RGSC_v3.4	5	143,033,358 - 143,033,574	UniSTS	RGSC3.4
Celera	5	134,526,622 - 134,526,838	UniSTS
RH 3.4 Map	15	46.9	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH80001

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	135,989,405 - 135,989,605 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	141,415,254 - 141,415,453	NCBI	Rnor6.0
Rnor_5.0	5	145,205,773 - 145,205,972	UniSTS	Rnor5.0
Rnor_5.0	5	145,193,225 - 145,193,424	UniSTS	Rnor5.0
RGSC_v3.4	5	143,033,226 - 143,033,425	UniSTS	RGSC3.4
Celera	5	134,526,490 - 134,526,689	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001030054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288335	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BF282685	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ782380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB761626	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CO384190	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV107792	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV113375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000034944 ⟹ ENSRNOP00000037684

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	135,989,465 - 136,004,762 (-)	Ensembl
Rnor_6.0 Ensembl	5	141,415,075 - 141,430,659 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112066 ⟹ ENSRNOP00000077012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	135,989,479 - 136,004,758 (-)	Ensembl

RefSeq Acc Id:

NM_001030054 ⟹ NP_001025225

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	141,274,174 - 141,289,575 (-)	NCBI
mRatBN7.2	5	135,989,378 - 136,004,782 (-)	NCBI
Rnor_6.0	5	141,415,226 - 141,430,627 (-)	NCBI
Rnor_5.0	5	145,193,043 - 145,221,146 (-)	NCBI
RGSC_v3.4	5	143,033,198 - 143,048,890 (-)	RGD
Celera	5	134,526,462 - 134,541,841 (-)	RGD

Sequence:

show sequence

GCCATTGGAGCCGGCTTGGCTTGGGAGCTGTAGCTGAAGAGTTGGGTTCAGGGCTCCTTTGCTG
CCGCGTCTGCGTCTGGTCTCTGGCCCTTCCGCGGGATGGCGTGCGGGGCGACACTGAAACGGCC
CATGGAGTTCGAGGCGGCGCTGCTGAGCCCCGGTTCCCCGAAGCGGCGACGCTGCGCCCCTCTG
CCCGGCCCCACTCCGGGCCTCAGGCCCCCGGACGCCGAGCCGCCGCCGTTTCAGATGCAGACAC
CGCCGGCGAGCCTCCAGCAGCCTGCCCCTCCCGGCAGCGAGCGTCGCCTTCCAACTCCTGAGCA
AATTTTTCAGAACATAAAACAAGAATATAATCGTTACCAGAGATGGAGACATTTAGAAGTTGTT
CTCAGTCAGAGTGAAGCCTGTACTTCAGAAAGCCAATCTCCCTCCTCGGCACTCACTGCACCAA
GCTCTCCAGGTGCTTTCTGGATGAAGAAGGACCAGCCCACCTTTACCCTTCGACAAGTGGGAAT
AATATGTGAGCGTCTCTTAAAAGACTATGAAGATAAAGTCCGGGAGGAGTATGAGCAGATCCTC
AGTACCAAACTGGCAGAACAGTATGAATCATTTGTGAAGTTCACGCATGATCAGATCATGCGAC
GATATGGGACAAGGCCAACAAGCTATGTATCCTGAAGCCTTCTTGCCTATCTGGGTACCAGATG
TGACCTCAAGAGATGGCTGCTGTATACTTTTTGCAACTGGTTTGATATCACATTTCAGCTCCAA
CTTTGCATCCTGAGAACACTTAAATGTTTCTGCAGGTCCATTTTATACAACTTGAAAGACCTTA
AAACTTTCTGGTTGCCACAAGCATATCTTTCTTTTCTGCTCATCCACTAAACAGCTGTGCCCTA
CTGTGATAGGTTTTCCAGACAAAAGTACCTGGAACAGCAGTTTAGCAAAGAATGCCTTCGGTGG
CACTCAACATGTGGAGTCTCCCCAAGCACAGCTCTGTGAGAAGTGTGAGTGTGTGCGTGTGTGT
GTGTGTCTGTGTTTTAAGTTATTATTTGTATTGTGCAAAACTTTTTGATCTTGGGGATTCTGGC
TGTGAATTTGATGCACGACAATTATGGTTAAAAACATTTTCTTGGTCTACAGAAGATCATTAAT
GTTTGGTGACCATATAAGTTGTAACAGTGGGTTGTTTATGTGTAGGTATTATCGTTAAATACAG
GGACTGTTTCCAGGCACAGAATTTGAATCGTAAGTTAGGATGGACATTAGACGTGATTATGATG
ATATAGGGAAGGTCTGCAGTCCTGAATCTGCAAATCCATGGTGAGAAATTAGAACAAACTGGAG
ACAGGCCATCAGTATATGGACTCTGCCTAGCTGTGCTGGAAAAATACTTTGACTCCAAGCCTTA
AAATACCCTGTGGAGTCTGAGCTCACCTCATTCATACAGTCATGGAGCTCCCTGGACGCCGAAC
TTCTACAGGGAGAAGATCTCCCCTGGAGCAGAAGATCAGGGTGTGCTCGGAGCGGAGTGTGTAA
CAGGAGTGCGGGGCTGGGCCAGGCTCGCAGCACTGCTACGTGGGAGGAGCCACTCACCTTTGCA
TCAGTTTCAACATAGAATCTGGAGCCTTTGTCCAGGTTCCCCCAAATTCTCCTCTAAGGTGTCC
GTGATCAACTGTTAGAGCTTGGTTTTGGCAATACCCTGCCTGAAGTTGCTTAATGGCTGCTCTT
TGCCTTGATCCCAAGGCTGTGAGCAGAAAGCAGCCTCTGTTTTGAGGAGGTGGGAGTTAAGTAT
ACATTTATTTTTACTGTGACTTGTTCAGGACCACATTTTACAAAATGCCTTGTTTCCTTTACTA
TTGTTTTGGAAAGGAAAGTTTTATGAAAACTGTTTTAGTTTGAATATAGAATAGTTTTATTAAT
TACGGCTTTATTTTGGAAAAATCTTGAGTTTTAATTCAAATGTTTGCCAATACCTTCCAAAGTA
AGGTGATATTCAGAGACAGTTGTTGTGATCAGCTGGCTTGCGGACATTTCTGGGGTATTCACAT
TTGAAGATTCCTTATTAATGAATGTCTTTGACTTAAATCTAACCAAAAACTGCAACATTATTCT
TTGTACATTTTCATTATATAGTGTTAACAAGCTTAGTTGCAAACAAATAAAATACTTAAGCTAT
TTGTTTAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_063288335 ⟹ XP_063144405

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	141,276,199 - 141,289,617 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001025225	(Get FASTA)	NCBI Sequence Viewer
	XP_063144405	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80387	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037684.5
	ENSRNOP00000077012.1

RefSeq Acc Id:	NP_001025225 ⟸ NM_001030054
- UniProtKB:	D3ZTH4 (UniProtKB/TrEMBL), A0A8I5Y994 (UniProtKB/TrEMBL), A6IS36 (UniProtKB/TrEMBL)
- Sequence:	show sequence MACGATLKRPMEFEAALLSPGSPKRRRCAPLPGPTPGLRPPDAEPPPFQMQTPPASLQQPAPPG SERRLPTPEQIFQNIKQEYNRYQRWRHLEVVLSQSEACTSESQSPSSALTAPSSPGAFWMKKDQ PTFTLRQVGIICERLLKDYEDKVREEYEQILSTKLAEQYESFVKFTHDQIMRRYGTRPTSYVS hide sequence

Ensembl Acc Id:

ENSRNOP00000037684 ⟸ ENSRNOT00000034944

Ensembl Acc Id:

ENSRNOP00000077012 ⟸ ENSRNOT00000112066

RefSeq Acc Id:	XP_063144405 ⟸ XM_063288335
- Peptide Label:	isoform X1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZTH4-F1-model_v2	AlphaFold	D3ZTH4	1-191	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694006

Promoter ID:

EPDNEW_R4531

Type:

initiation region

Name:

Akirin1_1

Description:

akirin 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	141,430,624 - 141,430,684	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1585989	AgrOrtholog
BioCyc Gene	G2FUF-39997	BioCyc
Ensembl Genes	ENSRNOG00000026610	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000034944.6	UniProtKB/TrEMBL
	ENSRNOT00000112066.1	UniProtKB/TrEMBL
InterPro	Akirin	UniProtKB/TrEMBL
KEGG Report	rno:595134	UniProtKB/TrEMBL
NCBI Gene	595134	ENTREZGENE
PANTHER	AKIRIN-1	UniProtKB/TrEMBL
	PTHR13293	UniProtKB/TrEMBL
PhenoGen	Akirin1	PhenoGen
RatGTEx	ENSRNOG00000026610	RatGTEx
UniProt	A0A8I5Y994	ENTREZGENE, UniProtKB/TrEMBL
	A6IS36	ENTREZGENE, UniProtKB/TrEMBL
	D3ZTH4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-23	Akirin1	akirin 1	LOC595134	hypothetical protein LOC595134	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC595134	hypothetical protein LOC595134			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar