AKIRIN1 (akirin 1) - Rat Genome Database

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Gene: AKIRIN1 (akirin 1) Chlorocebus sabaeus
Analyze
Symbol: AKIRIN1
Name: akirin 1
RGD ID: 18793547
Description: ENCODES a protein that exhibits transcription coregulator activity (inferred); INVOLVED IN myoblast migration involved in skeletal muscle regeneration (inferred); negative regulation of satellite cell differentiation (inferred); negative regulation of skeletal muscle satellite cell proliferation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN chromatin (inferred); nuclear membrane (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: akirin-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,884,495 - 93,904,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2093,881,394 - 93,904,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603322,935,470 - 22,948,425 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
AKIRIN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12093,884,495 - 93,904,217 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2093,881,394 - 93,904,171 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603322,935,470 - 22,948,425 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
AKIRIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38138,991,276 - 39,006,059 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl138,991,276 - 39,006,059 (+)EnsemblGRCh38hg38GRCh38
GRCh37139,456,948 - 39,471,731 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36139,229,504 - 39,243,566 (+)NCBINCBI36Build 36hg18NCBI36
Celera137,736,663 - 37,751,818 (+)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef137,576,957 - 37,591,791 (+)NCBIHuRef
CHM1_1139,572,291 - 39,587,109 (+)NCBICHM1_1
T2T-CHM13v2.0138,858,494 - 38,873,280 (+)NCBIT2T-CHM13v2.0
Akirin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394123,628,988 - 123,644,092 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4123,628,352 - 123,644,138 (-)EnsemblGRCm39 Ensembl
GRCm384123,735,195 - 123,750,299 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4123,734,559 - 123,750,345 (-)EnsemblGRCm38mm10GRCm38
MGSCv374123,412,438 - 123,427,542 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364123,237,498 - 123,252,602 (-)NCBIMGSCv36mm8
Celera4122,063,806 - 122,078,914 (-)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map457.42NCBI
Akirin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85141,274,174 - 141,289,617 (-)NCBIGRCr8
mRatBN7.25135,989,378 - 136,004,782 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5135,989,465 - 136,004,762 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5138,695,273 - 138,710,616 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05140,465,266 - 140,480,609 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05140,472,431 - 140,487,774 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05141,415,226 - 141,430,627 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5141,415,075 - 141,430,659 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05145,193,043 - 145,221,146 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45143,033,198 - 143,048,890 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5134,526,462 - 134,541,841 (-)NCBICelera
Cytogenetic Map5q36NCBI
Akirin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545216,607,980 - 16,624,376 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545216,607,980 - 16,624,376 (+)NCBIChiLan1.0ChiLan1.0
AKIRIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21187,828,530 - 187,843,196 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11186,966,190 - 186,980,837 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0138,269,096 - 38,283,920 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1139,615,879 - 39,631,132 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl139,616,036 - 39,629,300 (+)Ensemblpanpan1.1panPan2
AKIRIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1153,759,559 - 3,771,651 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl153,763,374 - 3,771,551 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha153,997,567 - 4,009,698 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0153,881,467 - 3,893,614 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl153,881,470 - 3,893,641 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1153,748,978 - 3,761,096 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0153,816,581 - 3,828,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0153,831,983 - 3,844,112 (-)NCBIUU_Cfam_GSD_1.0
Akirin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505855,150,620 - 55,167,407 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647420,975,350 - 20,992,518 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647420,975,401 - 20,992,184 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AKIRIN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl694,891,363 - 94,905,662 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1694,891,409 - 94,902,700 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2687,939,895 - 87,952,590 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Akirin1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476421,579,734 - 21,595,689 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476421,579,852 - 21,595,689 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000017407   ⟹   ENSCSAP00000016887
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl2093,881,394 - 93,904,171 (-)Ensembl
RefSeq Acc Id: XM_007979311   ⟹   XP_007977502
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12093,884,495 - 93,904,217 (-)NCBI
Vero_WHO_p1.0NW_02366603322,935,470 - 22,948,425 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007977502 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000016887
  ENSCSAP00000016887.1
RefSeq Acc Id: XP_007977502   ⟸   XM_007979311
- UniProtKB: A0A0D9S7P8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000016887   ⟸   ENSCSAT00000017407


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000001126 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000017407.1 UniProtKB/TrEMBL
InterPro Akirin UniProtKB/TrEMBL
KEGG Report csab:103225067 UniProtKB/TrEMBL
NCBI Gene AKIRIN1 ENTREZGENE
PANTHER AKIRIN-1 UniProtKB/TrEMBL
  PTHR13293 UniProtKB/TrEMBL
UniProt A0A0D9S7P8 ENTREZGENE, UniProtKB/TrEMBL