Dppa3l4 (developmental pluripotency associated 3 like 4) - Rat Genome Database

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Gene: Dppa3l4 (developmental pluripotency associated 3 like 4) Rattus norvegicus
Analyze
Symbol: Dppa3l4
Name: developmental pluripotency associated 3 like 4
RGD ID: 1562739
Description: INTERACTS WITH indole-3-methanol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: developmental pluripotency-associated protein 3-like; LOC500875; RGD1562739; similar to STELLA
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8792,292,803 - 92,293,569 (-)NCBIGRCr8
mRatBN7.2790,402,832 - 90,404,317 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0798,733,667 - 98,735,496 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0799,333,824 - 99,370,994 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4795,612,161 - 95,612,637 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera787,167,616 - 87,169,446 (-)NCBICelera
Cytogenetic Map7q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Dppa3l4
11 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)743747012135012528Rat
2293667Bss42Bone structure and strength QTL 427.250.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)74765143992651439Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)780221299124373579Rat
2317035Aia16Adjuvant induced arthritis QTL 162.71joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)759238038104238038Rat
2298475Eau6Experimental allergic uveoretinitis QTL 60.0029uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)784257275129257275Rat
71114Niddm14Non-insulin dependent diabetes mellitus QTL 144.5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)784257275129257275Rat
2293678Bss24Bone structure and strength QTL 246.710.0001femur morphology trait (VT:0000559)femur cross-sectional area (CMO:0001661)74765143992651439Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)743747012108555253Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)769736356112729554Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)773829340130221005Rat
10450828Scl79Serum cholesterol level QTL 793.50.001blood HDL cholesterol amount (VT:0000184)blood low density lipoprotein cholesterol level (CMO:0000053)789867376101773158Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat
2293685Bmd21Bone mineral density QTL 214.20.0003femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)74765143992651439Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)744421311118198041Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)783153392128153392Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)764002457135012528Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)781737938126737938Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)780221299109401111Rat
2293696Bmd32Bone mineral density QTL 325.10.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)74765143992651439Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)753612714103945643Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)762004452101773158Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)7946224698011544Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74659007091590070Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)743747099102228765Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
1558655Swd4Spike wave discharge measurement QTL 43.680.0002brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge severity grade (CMO:0001988)786983365131983365Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)7924703115097879Rat
2293707Bss32Bone structure and strength QTL 327.640.0001femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)74765143992651439Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)780221299125221299Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)741333674119109060Rat
1641908Teswt1Testicular weight QTL 13.28testis mass (VT:1000644)both testes wet weight (CMO:0000175)78022129994811326Rat
2293644Bmd29Bone mineral density QTL 295.40.0001femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)74765143992651439Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)768938720113886318Rat
2300178Bmd54Bone mineral density QTL 545.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)74765143992651439Rat
724537Niddm52Non-insulin dependent diabetes mellitus QTL 520.02blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)78022129993595843Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)761074194106074194Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)780221299112308525Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)762004452101773158Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)775918751120918751Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)768938720113886318Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)768938720113886318Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)769736226117455174Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)783591953134666232Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_001068930 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241687 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006241693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039080202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_576274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_039080202   ⟹   XP_038936130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8792,292,803 - 92,293,569 (-)NCBI
mRatBN7.2790,402,832 - 90,404,317 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038936130 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038936130   ⟸   XM_039080202


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-33300 BioCyc
NCBI Gene 500875 ENTREZGENE
PhenoGen Dppa3l4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Dppa3l4  developmental pluripotency associated 3 like 4  RGD1562739  similar to STELLA  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562739  similar to STELLA   RGD1562739_predicted  similar to STELLA (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562739_predicted  similar to STELLA (predicted)  LOC500875  similar to STELLA  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500875  similar to STELLA      Symbol and Name status set to provisional 70820 PROVISIONAL