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Gene: Cabp7 (calcium binding protein 7) Rattus norvegicus

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Symbol:

Cabp7

Name:

calcium binding protein 7

RGD ID:

1359269

Description:

Predicted to enable calcium ion binding activity. Predicted to be located in perinuclear region of cytoplasm and plasma membrane. Predicted to be active in trans-Golgi network membrane. Orthologous to human CABP7 (calcium binding protein 7); INTERACTS WITH 3,4-methylenedioxymethamphetamine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcium-binding protein 7; calneuron II; calneuron-2; calneuron-II; MGC94082; rCaBP7

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CABP7 (calcium binding protein 7)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther, PhylomeDB
Mus musculus (house mouse):	Cabp7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cabp7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CABP7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CABP7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cabp7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CABP7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CABP7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cabp7 (calcium binding protein 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CALN1 (calneuron 1)	HGNC	OrthoDB
Homo sapiens (human):	FBXO28 (F-box protein 28)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CABP7 (calcium binding protein 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cabp7 (calcium binding protein 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cabp7b (calcium binding protein 7b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	cabp7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	83,822,322 - 83,832,667 (-)	NCBI		GRCr8
mRatBN7.2	14	79,598,822 - 79,609,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	79,598,827 - 79,609,240 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	84,029,430 - 84,039,760 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	85,269,500 - 85,279,826 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	81,719,176 - 81,729,514 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	84,968,125 - 84,978,242 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	84,968,130 - 84,978,255 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	85,644,749 - 85,655,153 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	85,385,409 - 85,395,730 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	85,404,554 - 85,414,875 (-)	NCBI
Celera	14	78,504,196 - 78,514,187 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Breast Cancer, Familial (ISO)

vestibular schwannomatosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (EXP)

6-propyl-2-thiouracil (EXP)

8-Br-cAMP (ISO)

acrylamide (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

arsane (ISO)

arsenic atom (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

cadmium dichloride (ISO)

Cuprizon (EXP)

ethanol (ISO)

ketamine (EXP)

Licochalcone B (ISO)

malathion (ISO)

paracetamol (ISO)

rotenone (ISO)

serpentine asbestos (ISO)

sodium arsenite (ISO)

Tetrachlorobisphenol A (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA)

trans-Golgi network membrane (IBA,ISO)

Molecular Function

calcium ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Calcium-binding proteins: intracellular sensors from the calmodulin superfamily.	Haeseleer F, etal., Biochem Biophys Res Commun 2002 Jan 18;290(2):615-23.
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:17055077	PMID:19338761	PMID:19458041

Genomics

Comparative Map Data

Cabp7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	83,822,322 - 83,832,667 (-)	NCBI		GRCr8
mRatBN7.2	14	79,598,822 - 79,609,172 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	79,598,827 - 79,609,240 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	84,029,430 - 84,039,760 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	85,269,500 - 85,279,826 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	81,719,176 - 81,729,514 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	84,968,125 - 84,978,242 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	84,968,130 - 84,978,255 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	85,644,749 - 85,655,153 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	85,385,409 - 85,395,730 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	85,404,554 - 85,414,875 (-)	NCBI
Celera	14	78,504,196 - 78,514,187 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

CABP7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	29,720,003 - 29,731,833 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	29,720,003 - 29,731,833 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	30,115,992 - 30,127,822 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	28,446,344 - 28,457,822 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	28,440,897 - 28,452,372	NCBI
Celera	22	13,916,071 - 13,927,549 (+)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	13,055,007 - 13,091,456 (+)	NCBI		HuRef
CHM1_1	22	30,075,530 - 30,087,015 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	30,183,366 - 30,195,196 (+)	NCBI		T2T-CHM13v2.0

Cabp7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	4,686,892 - 4,697,179 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	4,686,892 - 4,696,778 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	4,736,892 - 4,747,179 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	4,736,892 - 4,746,778 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	4,638,824 - 4,646,781 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	4,638,824 - 4,646,781 (-)	NCBI		MGSCv36	mm8
Celera	11	5,239,312 - 5,247,542 (-)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	2.98	NCBI

Cabp7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	3,977,593 - 3,981,646 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	3,977,977 - 3,981,646 (+)	NCBI	ChiLan1.0	ChiLan1.0

CABP7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	39,691,943 - 39,703,490 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	42,393,262 - 42,404,809 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	10,763,495 - 10,775,460 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

CABP7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	22,916,556 - 22,927,377 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	22,916,480 - 22,924,979 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	22,787,556 - 22,798,267 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	23,290,075 - 23,300,795 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	23,289,181 - 23,298,514 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	23,000,305 - 23,011,018 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	23,262,878 - 23,273,568 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	23,322,632 - 23,333,327 (+)	NCBI		UU_Cfam_GSD_1.0

Cabp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	112,214,425 - 112,218,732 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	3,651,265 - 3,653,908 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	3,651,999 - 3,655,162 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CABP7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	46,747,579 - 46,758,167 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	46,747,654 - 46,759,312 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	49,783,821 - 49,792,536 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CABP7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	12,601,696 - 12,613,246 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	12,601,875 - 12,615,775 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	113,534,963 - 113,546,754 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cabp7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	6,031,958 - 6,042,750 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	6,032,039 - 6,043,495 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cabp7
24 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	201
Count of miRNA genes:	143
Interacting mature miRNAs:	158
Transcripts:	ENSRNOT00000010439
Prediction methods:	Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

Markers in Region

RH143960

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	79,599,378 - 79,599,480 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	84,968,682 - 84,968,783	NCBI	Rnor6.0
Rnor_5.0	14	85,645,302 - 85,645,403	UniSTS	Rnor5.0
RGSC_v3.4	14	85,385,962 - 85,386,063	UniSTS	RGSC3.4
Celera	14	78,504,753 - 78,504,854	UniSTS
Cytogenetic Map	14	q21	UniSTS

N28202

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	79,598,963 - 79,599,149 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	84,968,267 - 84,968,452	NCBI	Rnor6.0
Rnor_5.0	14	85,644,887 - 85,645,072	UniSTS	Rnor5.0
RGSC_v3.4	14	85,385,547 - 85,385,732	UniSTS	RGSC3.4
Celera	14	78,504,338 - 78,504,523	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH144089

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	79,599,017 - 79,599,316 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	84,968,321 - 84,968,619	NCBI	Rnor6.0
Rnor_5.0	14	85,644,941 - 85,645,239	UniSTS	Rnor5.0
RGSC_v3.4	14	85,385,601 - 85,385,899	UniSTS	RGSC3.4
Celera	14	78,504,392 - 78,504,690	UniSTS
RH 3.4 Map	14	552.7	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH141041

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	79,599,374 - 79,599,563 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	84,968,678 - 84,968,866	NCBI	Rnor6.0
Rnor_5.0	14	85,645,298 - 85,645,486	UniSTS	Rnor5.0
RGSC_v3.4	14	85,385,958 - 85,386,146	UniSTS	RGSC3.4
Celera	14	78,504,749 - 78,504,937	UniSTS
RH 3.4 Map	14	552.29	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	9	22	113	58	57	26	25	26	6	152	69	93	41	58	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY841152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC081959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000078179 ⟹ ENSRNOP00000074795

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	79,598,827 - 79,609,240 (-)	Ensembl
Rnor_6.0 Ensembl	14	84,968,130 - 84,978,255 (-)	Ensembl

RefSeq Acc Id:

NM_001007730 ⟹ NP_001007731

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	83,822,322 - 83,832,667 (-)	NCBI
mRatBN7.2	14	79,598,822 - 79,609,172 (-)	NCBI
Rnor_6.0	14	84,968,125 - 84,978,242 (-)	NCBI
Rnor_5.0	14	85,644,749 - 85,655,153 (-)	NCBI
RGSC_v3.4	14	85,385,409 - 85,395,730 (-)	RGD
Celera	14	78,504,196 - 78,514,187 (-)	NCBI

Sequence:

show sequence

GGCGGCGGGAGCCGGAGCGGCGGGCCGGGCAGCCGCACCAGCAAGCGGACGAGCGGGCGGCGAG
CAACGCGGAGCGCACGGGGCAGCGCGGAGGGAGCGCAACGCGCAGCGGTCGGAGCCGAGAGGCC
AAAGCGGCGCCGCCCCCGCCGTCCCTGCGAGGCCCCGGCCGGGATCCCGACGAGGGAGCCGGCG
GCATGGCCGGACAGCCCGGGGCGCGGGGGCGCTAGGTCCCGGGCGGGTGCCCATTGCCTCGCCG
CCGCCACTGCGCGCCGCACCGCGCGCCCCGCCCGCTCCAGCCGCCCCCGGGGCCGCCGGCGGCC
CATGAGCCCCGGCCTCAAAGTTTGCGGCGGGCGGGCGGGCGCGGAGCCTCCAAGATGCCGTTCC
ACCCGGTGACGGCGGCGTTGATGTACCGGGGCATCTACACCGTGCCCAACCTGCTGTCGGAGCA
GCGCCCGGTGGATATCCCTGAAGACGAGCTAGAGGAGATCCGAGAGGCCTTCAAGGTATTCGAC
CGAGATGGCAATGGCTTCATCTCTAAGCAGGAGCTGGGAACGGCCATGCGCTCCCTGGGCTACA
TGCCCAACGAGGTGGAGCTTGAGGTTATCATCCAGCGGCTAGATATGGATGGTGACGGCCAAGT
CGACTTTGAGGAGTTTGTAACGCTCCTGGGACCGAAGCTTTCCACCTCAGGGATCCCAGAGAAG
TTCCACGGCACGGACTTTGACACCGTCTTCTGGAAGTGTGACATGCAGAAGCTGACGGTGGACG
AGCTGAAACGACTTCTCTATGACACCTTCTGTGAGCACCTGTCCATGAAGGACATAGAGAACAT
CATCATGACGGAGGAGGAGAGCCACCTGGGCACGGCTGAGGAGTGTCCCGTGGACGTGGAGACC
TGTTCCAACCAGCAGATCCGCCAGACGTGCGTGCGCAAGAGCCTCATCTGCGCCTTCGCCATCG
CCTTCATCATCAGTGTCATGCTCATCGCGGCCAACCAGGTGCTGCGCAGTGGCATGAAGTAGGC
GCCCGCGGTGCCCACCTGGCCCGCTCCACACCCACCGCTGCCTGCAGCCCTCCCCTAGCTTGCT
CCCTGGGCCACCGCCCCTGGGCATTTCGAGCCTGGACATTGACCACCCCAAACCTCACCCCGTA
GGCCTTGCATGGAGCCATAGCCCAGCTGTGGAGGACCGGGTGGTGGCTTTGAGGACAGCCCTAG
CCCTAAACCCTGCCTGTGCCCTCACCTGGCCTGTATGTAGCGCTCACTTCCCACCACTAAGGAG
CTCCTGGAAAAGGAGCCCCAGGATCCAGTTAGTGCTGTGATCTTTTAGCCAGGCAAGGAACTCA
TGTCCAGAGTAGTGGGCAGGGTGGAGGTGGGCACAGGGCTGAGGCTACTGGGTCTCCTTCTCTG
ACACTCCTTAGACCCAAAGCCAGTCCTCCACGTACCTTCTGGGGCCTGTGTCTGCCCATTTCAC
AGGTGAGGAACCTGAGGCTTTAAGGCTTTGAGATTTGGCTTCAGACTCTTCTTCCACGGGGCTT
TTCAGGAAAGGCAGATGCCCATGCAAGATGGGGCATGAGAGATAGCCCCTAGGCCCATGAATTT
CTGAGCCATCCACCAGAGGCCTAGAGACCAAGGGCCACATTGTCACCTAGCACAGAACCTAGAA
ACCCAACTGAGGAAGGAAGTGCAGATCCTGCAGCCCTTGTGACTCCCCACTGGCCAGGGTGCAA
CCTTGGAAGGCCCTGAGCCACTCCCTAGGGAGCCACTCCCCTGAGGGTCTGCCACAGCCCTGTC
AGTGGCTACAGACCACTCTTCCAAGTCCAGGGCCTGCCCTCTTGGGAACCCTACTTCTCTGTTC
CCTCCAGGCCAGAGATCTGGCTCTCATGCTCCCCCACCCCCCTCATGCCATTCCTTGGCACCAG
CTCAGCCTGGGCAGATGCAAGCCTTCAGCTCTTCAGGGGCCGGGACGATTGGCAGTCCTCGGCT
CCCTTCCCCAGCCTGGGGCCACTTACTAGCTGGGCTGCCGCCACACTGGCATACGCTGTGCCCA
GCCTGGCTGAGCCTCTGCTGATTCCCTAAGCACCCAGGAGGGGATATTGTCTCATTCCAGCCCA
CCTGTCTCCTGAGGGAGGCAGGAAAGAGTCAAGAACAGGAGTGCCAGCAAGACAGACAGGCCAG
CCACTGAGGAAAGACTTTCTTTATAAACACTGGAATGTTCTTCCTGAGAAATGGCCTGAGGGAT
GGTGAGTGGATGGGGAGGCCAGGCTCAGAGGCCCCAGGGCAAACAGAGGGAAGGCGGCTCTGCT
TCCTAGGTTGAGTCTTTGCTATGACTGATGAGGCAGGTGGGAAGTCAGGCAGGGAGGTGGGGAA
GAGCTCAGCCCCACTGGACTCTGGACTGTACGGACCATCCACCAGGTGGGGGTGCCCTCAGGGA
GGGGGGCAGCTCCTGCATTGGTGGCCAGCCCACTGGGTACTGAAAGACAGTGGTTCTGATGGGT
TCAGCCCTGGAGAGGAGAAAGGTAGAGGATTAGAACGGGGCACCTCACAGACCCACTTCGCTCT
TCTACCATACTGGCTGTCAGGAAGGGTAGCCACCTGCATGGCCCTTCTGGAAGTAGAACCTTGA
TAACATGCAGACCCTCTGAGCCAGCCACCTCTTCTCGGAACTGAGCCCAAGGTGGGGGCTAGCC
CCAGAGACTGGCCTTGGGCAATATGGAAGTACTCTTAGTGTCCGTTCACCTGTGGGGGACTGGG
TAAATATTTATGCACGTCCACAGCAGAGAATGCTATGCAGCCTGTGTAAAAATCAAGGCCTATA
TGCACTGATGAAGAAAGATATACTATGTGAGTATGGAGAAAAAGCAGCTTATAAAATAATGTAT
ATAGCATGATACTATTTTTGTTTAAAGATATATGACATATATAAATGCATAAAAACAACCCTGG
AAGTTACAGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001007731	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH81959	(Get FASTA)	NCBI Sequence Viewer
	AAW21810	(Get FASTA)	NCBI Sequence Viewer
	EDM00241	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000074795.1
	ENSRNOP00055039588
	ENSRNOP00060043838
	ENSRNOP00065044762
GenBank Protein	Q66H96	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001007731 ⟸ NM_001007730

- UniProtKB:

Q66H96 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MPFHPVTAALMYRGIYTVPNLLSEQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRS
LGYMPNEVELEVIIQRLDMDGDGQVDFEEFVTLLGPKLSTSGIPEKFHGTDFDTVFWKCDMQKL
TVDELKRLLYDTFCEHLSMKDIENIIMTEEESHLGTAEECPVDVETCSNQQIRQTCVRKSLICA
FAIAFIISVMLIAANQVLRSGMK

hide sequence

Ensembl Acc Id:

ENSRNOP00000074795 ⟸ ENSRNOT00000078179

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q66H96-F1-model_v2	AlphaFold	Q66H96	1-215	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359269	AgrOrtholog
BioCyc Gene	G2FUF-15169	BioCyc
Ensembl Genes	ENSRNOG00000057703	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00055027773	UniProtKB/Swiss-Prot
	ENSRNOG00060030359	UniProtKB/Swiss-Prot
	ENSRNOG00065031559	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000078179.2	UniProtKB/Swiss-Prot
	ENSRNOT00055048094	UniProtKB/Swiss-Prot
	ENSRNOT00060052734	UniProtKB/Swiss-Prot
	ENSRNOT00065054395	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7124492	IMAGE-MGC_LOAD
InterPro	Ca-binding_regulatory	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF-hand-dom_pair	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_hand_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S100/CaBP-9k_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:360970	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94082	IMAGE-MGC_LOAD
NCBI Gene	360970	ENTREZGENE
PANTHER	CALCIUM-BINDING PROTEIN 7	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CALCIUM-BINDING PROTEIN 8-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	EF-hand_1	UniProtKB/TrEMBL
	EF-hand_7	UniProtKB/Swiss-Prot
PhenoGen	Cabp7	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	EF_HAND_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	S100_CABP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000057703	RatGTEx
	ENSRNOG00055027773	RatGTEx
	ENSRNOG00060030359	RatGTEx
	ENSRNOG00065031559	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	EF-hand	UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt	A6IKH7_RAT	UniProtKB/TrEMBL
	CABP7_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-03-30	Cabp7	calcium binding protein 7			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	Cabp7	calcium binding protein 7			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_domains	in the human homolog, the EF-hand 3 and EF-hand 4 domains may be nonfunctional as a result of changes in domain structure, including a deletion and sequence alterations	1556591

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar