CABP7 (calcium binding protein 7) - Rat Genome Database

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Gene: CABP7 (calcium binding protein 7) Sus scrofa
Analyze
Symbol: CABP7
Name: calcium binding protein 7
RGD ID: 14296919
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH Breast Cancer, Familial (ortholog); vestibular schwannomatosis (ortholog); FOUND IN cytoplasm (inferred); Golgi apparatus (inferred); perinuclear region of cytoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-binding protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,747,579 - 46,758,167 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,747,654 - 46,759,312 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,783,821 - 49,792,536 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
CABP7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1446,747,579 - 46,758,167 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11446,747,654 - 46,759,312 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21449,783,821 - 49,792,536 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CABP7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382229,720,003 - 29,731,833 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2229,720,003 - 29,731,833 (+)EnsemblGRCh38hg38GRCh38
GRCh372230,115,992 - 30,127,822 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362228,446,344 - 28,457,822 (+)NCBINCBI36Build 36hg18NCBI36
Build 342228,440,897 - 28,452,372NCBI
Celera2213,916,071 - 13,927,549 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,055,007 - 13,091,456 (+)NCBIHuRef
CHM1_12230,075,530 - 30,087,015 (+)NCBICHM1_1
T2T-CHM13v2.02230,183,366 - 30,195,196 (+)NCBIT2T-CHM13v2.0
Cabp7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39114,686,892 - 4,697,179 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl114,686,892 - 4,696,778 (-)EnsemblGRCm39 Ensembl
GRCm38114,736,892 - 4,747,179 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl114,736,892 - 4,746,778 (-)EnsemblGRCm38mm10GRCm38
MGSCv37114,638,824 - 4,646,781 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36114,638,824 - 4,646,781 (-)NCBIMGSCv36mm8
Celera115,239,312 - 5,247,542 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.98NCBI
Cabp7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,822,322 - 83,832,667 (-)NCBIGRCr8
mRatBN7.21479,598,822 - 79,609,172 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1479,598,827 - 79,609,240 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1484,029,430 - 84,039,760 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01485,269,500 - 85,279,826 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01481,719,176 - 81,729,514 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,968,125 - 84,978,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,968,130 - 84,978,255 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01485,644,749 - 85,655,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41485,385,409 - 85,395,730 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11485,404,554 - 85,414,875 (-)NCBI
Celera1478,504,196 - 78,514,187 (-)NCBICelera
Cytogenetic Map14q21NCBI
Cabp7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554553,977,593 - 3,981,646 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554553,977,977 - 3,981,646 (+)NCBIChiLan1.0ChiLan1.0
CABP7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22339,691,943 - 39,703,490 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12242,393,262 - 42,404,809 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02210,763,495 - 10,775,460 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
CABP7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12622,916,556 - 22,927,377 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2622,916,480 - 22,924,979 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2622,787,556 - 22,798,267 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02623,290,075 - 23,300,795 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2623,289,181 - 23,298,514 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12623,000,305 - 23,011,018 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02623,262,878 - 23,273,568 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02623,322,632 - 23,333,327 (+)NCBIUU_Cfam_GSD_1.0
Cabp7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118112,214,425 - 112,218,732 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366573,651,265 - 3,653,908 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366573,651,999 - 3,655,162 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CABP7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11912,601,696 - 12,613,246 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1912,601,875 - 12,615,775 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045113,534,963 - 113,546,754 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cabp7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,031,958 - 6,042,750 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,032,039 - 6,043,495 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CABP7
150 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
8 20 2 7 5 20 1

Sequence


Ensembl Acc Id: ENSSSCT00000010948   ⟹   ENSSSCP00000010663
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1446,747,579 - 46,758,167 (+)Ensembl
RefSeq Acc Id: XM_021072790   ⟹   XP_020928449
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11446,747,654 - 46,759,312 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020928449   ⟸   XM_021072790
- UniProtKB: A0A4X1VET8 (UniProtKB/TrEMBL),   F1RFF2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000010663   ⟸   ENSSSCT00000010948
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000025869 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025051217 UniProtKB/TrEMBL
  ENSSSCG00030041653 UniProtKB/TrEMBL
  ENSSSCG00035018923 UniProtKB/TrEMBL
  ENSSSCG00040004360 UniProtKB/TrEMBL
  ENSSSCG00045032837 UniProtKB/TrEMBL
  ENSSSCG00050078702 UniProtKB/TrEMBL
  ENSSSCG00055028358 UniProtKB/TrEMBL
  ENSSSCG00060077222 UniProtKB/TrEMBL
  ENSSSCG00065079078 UniProtKB/TrEMBL
  ENSSSCG00070023330 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000010948 ENTREZGENE
  ENSSSCT00000010948.5 UniProtKB/TrEMBL
  ENSSSCT00025069981.1 UniProtKB/TrEMBL
  ENSSSCT00030057899.1 UniProtKB/TrEMBL
  ENSSSCT00035024463.1 UniProtKB/TrEMBL
  ENSSSCT00040005748.1 UniProtKB/TrEMBL
  ENSSSCT00045056055.1 UniProtKB/TrEMBL
  ENSSSCT00050108527.1 UniProtKB/TrEMBL
  ENSSSCT00055056241.1 UniProtKB/TrEMBL
  ENSSSCT00060106229.1 UniProtKB/TrEMBL
  ENSSSCT00065109887.1 UniProtKB/TrEMBL
  ENSSSCT00070046521.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro Ca-binding_regulatory UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
NCBI Gene CABP7 ENTREZGENE
PANTHER CALCIUM-BINDING PROTEIN 7 UniProtKB/TrEMBL
  CALCIUM-BINDING PROTEIN 8-RELATED UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A4X1VET8 ENTREZGENE, UniProtKB/TrEMBL
  F1RFF2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:107372 ENTREZGENE