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Gene: ZMAT5 (zinc finger matrin-type 5) Homo sapiens

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Symbol:

ZMAT5

Name:

zinc finger matrin-type 5

RGD ID:

1607019

HGNC Page

HGNC:28046

Description:

Predicted to enable zinc ion binding activity. Predicted to be involved in RNA splicing. Located in nucleoplasm. Part of U12-type spliceosomal complex.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

SNRNP20; U11/U12 small nuclear ribonucleoprotein 20 kDa protein; U11/U12 snRNP 20 kDa protein; U11/U12 snRNP 20K; U11/U12-20K; ZC3H19; zinc finger CCCH-type containing 19; zinc finger matrin-type protein 5; zinc finger, matrin type 5; zinc finger, matrin-type 5

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Mus musculus (house mouse):	Zmat5 (zinc finger, matrin type 5)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Rattus norvegicus (Norway rat):	Zmat5 (zinc finger, matrin type 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Chinchilla lanigera (long-tailed chinchilla):	Zmat5 (zinc finger matrin-type 5)	NCBI	Ortholog
Pan paniscus (bonobo/pygmy chimpanzee):	ZMAT5 (zinc finger matrin-type 5)	NCBI	Ortholog
Canis lupus familiaris (dog):	ZMAT5 (zinc finger matrin-type 5)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Zmat5 (zinc finger matrin-type 5)	NCBI	Ortholog
Sus scrofa (pig):	ZMAT5 (zinc finger matrin-type 5)	HGNC	Ensembl, NCBI, OMA, OrthoDB, Panther, Treefam
Chlorocebus sabaeus (green monkey):	ZMAT5 (zinc finger matrin-type 5)	NCBI	Ortholog
Heterocephalus glaber (naked mole-rat):	Zmat5 (zinc finger matrin-type 5)	NCBI	Ortholog
Other homologs ²
Sus scrofa (pig):	CABP7 (calcium binding protein 7)	HGNC	EggNOG, Treefam
Rattus norvegicus (Norway rat):	Kat6a (lysine acetyltransferase 6A)	HGNC	OMA
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Zmat5 (zinc finger, matrin type 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Zmat5 (zinc finger, matrin type 5)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zmat5 (zinc finger, matrin-type 5)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid\|ZFIN)
Drosophila melanogaster (fruit fly):	CG31922	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus laevis (African clawed frog):	zmat5.S	Alliance	DIOPT (Xenbase)
Xenopus tropicalis (tropical clawed frog):	zmat5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus laevis (African clawed frog):	zmat5.L	Alliance	DIOPT (Xenbase)

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	29,730,956 - 29,767,007 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	29,730,956 - 29,767,011 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	30,126,945 - 30,162,996 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	28,456,945 - 28,492,969 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	13,926,672 - 13,962,699 (-)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	13,090,579 - 13,126,584 (-)	NCBI		HuRef
CHM1_1	22	30,086,138 - 30,122,154 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	30,194,319 - 30,230,905 (-)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZMAT5	Human	Breast Cancer, Familial		IAGP	RGD:127273312	8554872	ClinVar Annotator: match by term: Familial cancer of breast	ClinVar	PMID:21876083\|PMID:24713400\|PMID:28492532
ZMAT5	Human	vestibular schwannomatosis		IAGP	RGD:127271102	8554872	ClinVar Annotator: match by term: Neurofibromatosis, type 2	ClinVar	PMID:10220142\|PMID:15645494\|PMID:16983642\|PMID:28492532\|PMID:9643284\|PMID:9817927

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZMAT5	Human	1,2-dimethylhydrazine	increases expression	ISO	RGD:1617547	6480464	1,2-Dimethylhydrazine results in increased expression of ZMAT5 mRNA	CTD	PMID:22206623
ZMAT5	Human	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:1559774	6480464	Tetrachlorodibenzodioxin results in increased expression of ZMAT5 mRNA	CTD	PMID:33387578
ZMAT5	Human	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
ZMAT5	Human	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of ZMAT5 mRNA	CTD	PMID:32763439
ZMAT5	Human	aflatoxin B1	increases expression	EXP		6480464	Aflatoxin B1 results in increased expression of ZMAT5 mRNA	CTD	PMID:27153756
ZMAT5	Human	aflatoxin B1	affects methylation	EXP		6480464	Aflatoxin B1 affects the methylation of ZMAT5 intron	CTD	PMID:30157460
ZMAT5	Human	atrazine	increases expression	EXP		6480464	Atrazine results in increased expression of ZMAT5 mRNA	CTD	PMID:22378314
ZMAT5	Human	benzo[a]pyrene	affects methylation	EXP		6480464	Benzo(a)pyrene affects the methylation of ZMAT5 intron	CTD	PMID:30157460
ZMAT5	Human	benzo[e]pyrene	decreases methylation	EXP		6480464	benzo(e)pyrene results in decreased methylation of ZMAT5 intron	CTD	PMID:30157460
ZMAT5	Human	bisphenol A	increases expression	ISO	RGD:1559774	6480464	bisphenol A results in increased expression of ZMAT5 mRNA	CTD	PMID:25181051
ZMAT5	Human	bisphenol F	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
ZMAT5	Human	bisphenol F	decreases expression	ISO	RGD:1617547	6480464	bisphenol F results in decreased expression of ZMAT5 mRNA	CTD	PMID:38685157
ZMAT5	Human	cadmium dichloride	increases expression	ISO	RGD:1559774	6480464	Cadmium Chloride results in increased expression of ZMAT5 mRNA	CTD	PMID:33453195
ZMAT5	Human	CGP 52608	multiple interactions	EXP		6480464	CGP 52608 promotes the reaction [RORA protein binds to ZMAT5 gene]	CTD	PMID:28238834
ZMAT5	Human	copper atom	multiple interactions	EXP		6480464	[Disulfiram binds to Copper] which results in decreased expression of ZMAT5 mRNA	CTD	PMID:24690739
ZMAT5	Human	copper(0)	multiple interactions	EXP		6480464	[Disulfiram binds to Copper] which results in decreased expression of ZMAT5 mRNA	CTD	PMID:24690739
ZMAT5	Human	dexamethasone	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
ZMAT5	Human	disulfiram	multiple interactions	EXP		6480464	[Disulfiram binds to Copper] which results in decreased expression of ZMAT5 mRNA	CTD	PMID:24690739
ZMAT5	Human	doxorubicin	increases expression	EXP		6480464	Doxorubicin results in increased expression of ZMAT5 mRNA	CTD	PMID:29803840
ZMAT5	Human	folic acid	decreases expression	ISO	RGD:1617547	6480464	Folic Acid results in decreased expression of ZMAT5 mRNA	CTD	PMID:25629700
ZMAT5	Human	indometacin	multiple interactions	EXP		6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol F] more ...	CTD	PMID:28628672
ZMAT5	Human	Licochalcone B	increases expression	EXP		6480464	licochalcone B results in increased expression of ZMAT5 mRNA	CTD	PMID:33647349
ZMAT5	Human	methapyrilene	decreases methylation	EXP		6480464	Methapyrilene results in decreased methylation of ZMAT5 intron	CTD	PMID:30157460
ZMAT5	Human	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of ZMAT5 mRNA	CTD	PMID:26690555
ZMAT5	Human	propiconazole	increases expression	ISO	RGD:1617547	6480464	propiconazole results in increased expression of ZMAT5 mRNA	CTD	PMID:21278054
ZMAT5	Human	resveratrol	multiple interactions	EXP		6480464	[Plant Extracts co-treated with Resveratrol] results in increased expression of ZMAT5 mRNA	CTD	PMID:23557933
ZMAT5	Human	sodium arsenite	increases expression	EXP		6480464	sodium arsenite results in increased expression of ZMAT5 mRNA	CTD	PMID:38568856
ZMAT5	Human	thalidomide	decreases expression	ISO	RGD:1617547	6480464	Thalidomide results in decreased expression of ZMAT5 mRNA	CTD	PMID:26217789
ZMAT5	Human	thioacetamide	decreases expression	ISO	RGD:1559774	6480464	Thioacetamide results in decreased expression of ZMAT5 mRNA	CTD	PMID:34492290
ZMAT5	Human	thiram	increases expression	EXP		6480464	Thiram results in increased expression of ZMAT5 mRNA	CTD	PMID:38568856
ZMAT5	Human	toluene	decreases expression	ISO	RGD:1559774	6480464	Toluene results in decreased expression of ZMAT5 mRNA	CTD	PMID:22967744
ZMAT5	Human	triphenyl phosphate	affects expression	EXP		6480464	triphenyl phosphate affects the expression of ZMAT5 mRNA	CTD	PMID:37042841

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZMAT5	Human	mRNA processing	involved_in	IEA	UniProtKB-KW:KW-0507	150520179		UniProt	GO_REF:0000043
ZMAT5	Human	RNA splicing	involved_in	IC	GO:0005689	150520179	PMID:15146077	HGNC-UCL	PMID:15146077
ZMAT5	Human	RNA splicing	involved_in	IEA	UniProtKB-KW:KW-0508	150520179		UniProt	GO_REF:0000043

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZMAT5	Human	nucleoplasm	located_in	TAS		150520179		Reactome	Reactome:R-HSA-75079\|Reactome:R-HSA-75080\|Reactome:R-HSA-75081\|Reactome:R-HSA-75082\|Reactome:R-HSA-75083
ZMAT5	Human	nucleoplasm	located_in	IDA		150520179		HPA	GO_REF:0000052
ZMAT5	Human	nucleus	located_in	IEA	UniProtKB-SubCell:SL-0191	150520179		UniProt	GO_REF:0000044
ZMAT5	Human	nucleus	located_in	IEA	UniProtKB-KW:KW-0539	150520179		UniProt	GO_REF:0000043
ZMAT5	Human	spliceosomal complex	part_of	IEA	UniProtKB-KW:KW-0747	150520179		UniProt	GO_REF:0000043
ZMAT5	Human	U12-type spliceosomal complex	part_of	IDA		150520179	PMID:15146077	HGNC-UCL	PMID:15146077
ZMAT5	Human	U12-type spliceosomal complex	part_of	IBA	FB:FBgn0051922\|PANTHER:PTN000420170\|UniProtKB:Q9UDW3	150520179		GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
ZMAT5	Human	metal ion binding	enables	IEA	InterPro:IPR000571\|InterPro:IPR036855	150520179		InterPro	GO_REF:0000002
ZMAT5	Human	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
ZMAT5	Human	protein binding	enables	IPI	UniProtKB:A5D8V6\|UniProtKB:O95872\|UniProtKB:P31273\|UniProtKB:P40692\|UniProtKB:P55040\|UniProtKB:Q02930-3\|UniProtKB:Q13895\|UniProtKB:Q6IQ23-2\|UniProtKB:Q6ZRY4\|UniProtKB:Q8TAU3\|UniProtKB:Q8WV44\|UniProtKB:Q8WWB5\|UniProtKB:Q96GM5\|UniProtKB:Q96HB5\|UniProtKB:Q9BT92\|UniProtKB:Q9H6L4\|UniProtKB:Q9NW38\|UniProtKB:Q9NX04	150520179	PMID:32296183	IntAct	PMID:32296183
ZMAT5	Human	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	150520179		UniProt	GO_REF:0000043
ZMAT5	Human	zinc ion binding	enables	IEA	InterPro:IPR013085	150520179		InterPro	GO_REF:0000002

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:7566098	PMID:9847074	PMID:12477932	PMID:15146077	PMID:15461802	PMID:15489334	PMID:17213182	PMID:18029348	PMID:21873635	PMID:22807096	PMID:24550385	PMID:26186194
PMID:28514442	PMID:30033366	PMID:32296183	PMID:33961781	PMID:34133714	PMID:34373451	PMID:35559673	PMID:38697112

ZMAT5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	29,730,956 - 29,767,007 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	29,730,956 - 29,767,011 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	30,126,945 - 30,162,996 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	28,456,945 - 28,492,969 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	22	13,926,672 - 13,962,699 (-)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	13,090,579 - 13,126,584 (-)	NCBI		HuRef
CHM1_1	22	30,086,138 - 30,122,154 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	30,194,319 - 30,230,905 (-)	NCBI		T2T-CHM13v2.0

Zmat5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	4,654,671 - 4,687,669 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	4,654,678 - 4,687,669 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	4,704,656 - 4,737,669 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	4,704,678 - 4,737,669 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	4,604,681 - 4,637,669 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	4,604,681 - 4,637,669 (+)	NCBI		MGSCv36	mm8
Celera	11	5,203,571 - 5,238,157 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	2.96	NCBI

Zmat5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	83,791,005 - 83,823,095 (+)	NCBI		GRCr8
mRatBN7.2	14	79,568,644 - 79,599,595 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	79,568,758 - 79,599,594 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	83,999,301 - 84,030,203 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	85,239,373 - 85,270,273 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	81,689,050 - 81,719,949 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	84,937,843 - 84,968,898 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	84,953,786 - 84,969,116 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	85,614,682 - 85,645,518 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	85,370,610 - 85,386,181 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	78,473,939 - 78,504,972 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Zmat5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	3,980,134 - 4,011,664 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	3,981,753 - 4,013,138 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZMAT5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	39,702,607 - 39,738,750 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	42,403,926 - 42,440,070 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	10,774,446 - 10,810,609 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	28,580,010 - 28,615,512 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	28,580,010 - 28,615,498 (-)	Ensembl	panpan1.1		panPan2

ZMAT5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	22,926,327 - 22,953,189 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	22,926,554 - 22,940,725 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	22,797,335 - 22,824,147 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	23,299,862 - 23,326,695 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	26	23,010,086 - 23,036,902 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	23,272,639 - 23,299,448 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	23,332,398 - 23,359,218 (-)	NCBI		UU_Cfam_GSD_1.0

Zmat5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	112,184,881 - 112,215,263 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936657	3,654,867 - 3,685,750 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936657	3,655,437 - 3,685,717 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZMAT5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	46,758,442 - 46,782,969 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	46,758,436 - 46,783,055 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	49,792,639 - 49,817,290 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZMAT5
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	12,612,360 - 12,643,906 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	12,610,040 - 12,643,843 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	113,505,269 - 113,535,851 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zmat5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	6,042,843 - 6,080,440 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	6,042,843 - 6,080,512 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in ZMAT5
11 total Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 22q11.21-12.3(chr22:18178957-31821193)x3	copy number gain	See cases [RCV000050768]	Chr22:18178957..31821193 [GRCh38] Chr22:18661724..32217179 [GRCh37] Chr22:17041724..30547179 [NCBI36] Chr22:22q11.21-12.3	pathogenic
GRCh38/hg38 22q12.1-12.3(chr22:26979579-33992220)x3	copy number gain	See cases [RCV000050553]	Chr22:26979579..33992220 [GRCh38] Chr22:27375542..34388209 [GRCh37] Chr22:25705542..32718209 [NCBI36] Chr22:22q12.1-12.3	pathogenic
GRCh38/hg38 22q12.2(chr22:29281920-29878399)x3	copy number gain	See cases [RCV000051199]	Chr22:29281920..29878399 [GRCh38] Chr22:29677909..30274388 [GRCh37] Chr22:28007909..28604388 [NCBI36] Chr22:22q12.2	uncertain significance
GRCh38/hg38 22q12.1-12.2(chr22:28278805-31742328)x1	copy number loss	See cases [RCV000052870]	Chr22:28278805..31742328 [GRCh38] Chr22:28674793..32138314 [GRCh37] Chr22:27004793..30468314 [NCBI36] Chr22:22q12.1-12.2	pathogenic
GRCh38/hg38 22q12.1-12.2(chr22:28441035-30276511)x1	copy number loss	See cases [RCV000052871]	Chr22:28441035..30276511 [GRCh38] Chr22:28837023..30672500 [GRCh37] Chr22:27167023..29002500 [NCBI36] Chr22:22q12.1-12.2	pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916608-50739836)x3	copy number gain	See cases [RCV000133646]	Chr22:16916608..50739836 [GRCh38] Chr22:17397498..51178264 [GRCh37] Chr22:15777498..49525130 [NCBI36] Chr22:22q11.1-13.33	pathogenic
GRCh38/hg38 22q11.1-13.33(chr22:16916743-50739785)x3	copy number gain	See cases [RCV000134730]	Chr22:16916743..50739785 [GRCh38] Chr22:17397633..51178213 [GRCh37] Chr22:15777633..49525079 [NCBI36] Chr22:22q11.1-13.33	pathogenic
GRCh38/hg38 22q11.23-12.3(chr22:23279231-36247369)x3	copy number gain	See cases [RCV000138172]	Chr22:23279231..36247369 [GRCh38] Chr22:23621418..36643415 [GRCh37] Chr22:21951418..34973361 [NCBI36] Chr22:22q11.23-12.3	pathogenic
GRCh38/hg38 22q11.21-12.3(chr22:20907226-37187347)x3	copy number gain	See cases [RCV000137926]	Chr22:20907226..37187347 [GRCh38] Chr22:21261514..37583387 [GRCh37] Chr22:19591514..35913333 [NCBI36] Chr22:22q11.21-12.3	pathogenic
GRCh38/hg38 22q12.1-12.2(chr22:26451042-31451926)x1	copy number loss	See cases [RCV000143415]	Chr22:26451042..31451926 [GRCh38] Chr22:26847008..31847912 [GRCh37] Chr22:25177008..30177912 [NCBI36] Chr22:22q12.1-12.2	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237518)x3	copy number gain	See cases [RCV000240091]	Chr22:16054691..51237518 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51220902)x3	copy number gain	See cases [RCV000446956]	Chr22:16054691..51220902 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q12.2(chr22:30021252-30305283)x3	copy number gain	See cases [RCV000447326]	Chr22:30021252..30305283 [GRCh37] Chr22:22q12.2	uncertain significance
GRCh37/hg19 22q12.1-12.2(chr22:29537064-30994320)x3	copy number gain	See cases [RCV000448504]	Chr22:29537064..30994320 [GRCh37] Chr22:22q12.1-12.2	uncertain significance
GRCh37/hg19 22q11.1-13.33(chr22:16054691-51237463)x3	copy number gain	See cases [RCV000448847]	Chr22:16054691..51237463 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q12.1-12.3(chr22:28349854-33013062)x3	copy number gain	See cases [RCV000510523]	Chr22:28349854..33013062 [GRCh37] Chr22:22q12.1-12.3	likely pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838)	copy number gain	See cases [RCV000510873]	Chr22:16888900..51197838 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q11.23-12.3(chr22:23637907-36614412)x3	copy number gain	See cases [RCV000511098]	Chr22:23637907..36614412 [GRCh37] Chr22:22q11.23-12.3	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888900-51197838)x3	copy number gain	See cases [RCV000512333]	Chr22:16888900..51197838 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q12.2(chr22:29644625-31051719)x1	copy number loss	not provided [RCV000684497]	Chr22:29644625..31051719 [GRCh37] Chr22:22q12.2	pathogenic
GRCh37/hg19 22q11.22-12.3(chr22:22460754-35198232)x3	copy number gain	not provided [RCV000684530]	Chr22:22460754..35198232 [GRCh37] Chr22:22q11.22-12.3	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16054667-51243435)x3	copy number gain	not provided [RCV000741689]	Chr22:16054667..51243435 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51195728)x3	copy number gain	not provided [RCV000741691]	Chr22:16114244..51195728 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16114244-51211392)x3	copy number gain	not provided [RCV000741692]	Chr22:16114244..51211392 [GRCh37] Chr22:22q11.1-13.33	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16888899-51197838)x3	copy number gain	not provided [RCV000846344]	Chr22:16888899..51197838 [GRCh37] Chr22:22q11.1-13.33	pathogenic
inv(22)(q12.2q12.2)	inversion	Anaplastic ependymoma [RCV000785873]	Chr22:29684716..31740655 [GRCh37] Chr22:22q12.2	likely pathogenic
GRCh37/hg19 22q12.1-12.2(chr22:28291202-30450920)x1	copy number loss	not provided [RCV001258778]	Chr22:28291202..30450920 [GRCh37] Chr22:22q12.1-12.2	pathogenic
GRCh37/hg19 22q11.1-13.33(chr22:16197005-51224252)x3	copy number gain	See cases [RCV001263056]	Chr22:16197005..51224252 [GRCh37] Chr22:22q11.1-13.33	pathogenic
NC_000022.10:g.(?_29083885)_(30337586_?)del	deletion	Neurofibromatosis, type 2 [RCV001390044]	Chr22:29083885..30337586 [GRCh37] Chr22:22q12.1-12.2	pathogenic
NC_000022.10:g.(?_29105984)_(30337586_?)del	deletion	Familial cancer of breast [RCV001390747]	Chr22:29105984..30337586 [GRCh37] Chr22:22q12.1-12.2	pathogenic
GRCh37/hg19 22q12.2(chr22:30021252-30305283)	copy number gain	not specified [RCV002052749]	Chr22:30021252..30305283 [GRCh37] Chr22:22q12.2	uncertain significance
NC_000022.10:g.(?_29083885)_(34046674_?)dup	duplication	not provided [RCV001979643]	Chr22:29083885..34046674 [GRCh37] Chr22:22q12.1-12.3	uncertain significance
NM_001003692.2(ZMAT5):c.139A>G (p.Ile47Val)	single nucleotide variant	not specified [RCV004160972]	Chr22:29742469 [GRCh38] Chr22:30138458 [GRCh37] Chr22:22q12.2	uncertain significance
NM_001003692.2(ZMAT5):c.460C>T (p.Arg154Trp)	single nucleotide variant	not specified [RCV004224754]	Chr22:29731278 [GRCh38] Chr22:30127267 [GRCh37] Chr22:22q12.2	uncertain significance
NM_001003692.2(ZMAT5):c.424G>T (p.Gly142Cys)	single nucleotide variant	not specified [RCV004173085]	Chr22:29731314 [GRCh38] Chr22:30127303 [GRCh37] Chr22:22q12.2	uncertain significance
GRCh37/hg19 22q12.2(chr22:29986551-30157699)x3	copy number gain	not provided [RCV003485244]	Chr22:29986551..30157699 [GRCh37] Chr22:22q12.2	uncertain significance
NM_001003692.2(ZMAT5):c.140T>C (p.Ile47Thr)	single nucleotide variant	not specified [RCV004489008]	Chr22:29742468 [GRCh38] Chr22:30138457 [GRCh37] Chr22:22q12.2	uncertain significance
NM_001003692.2(ZMAT5):c.164G>A (p.Arg55Gln)	single nucleotide variant	not specified [RCV004489009]	Chr22:29742444 [GRCh38] Chr22:30138433 [GRCh37] Chr22:22q12.2	uncertain significance
NM_001003692.2(ZMAT5):c.230T>C (p.Met77Thr)	single nucleotide variant	not specified [RCV004489010]	Chr22:29740691 [GRCh38] Chr22:30136680 [GRCh37] Chr22:22q12.2	uncertain significance
NM_001003692.2(ZMAT5):c.62G>A (p.Arg21His)	single nucleotide variant	not specified [RCV004687302]	Chr22:29748483 [GRCh38] Chr22:30144472 [GRCh37] Chr22:22q12.2	uncertain significance

Predicted Target Of

	Summary Value
Count of predictions:	820
Count of miRNA genes:	411
Interacting mature miRNAs:	449
Transcripts:	ENST00000344318, ENST00000397781, ENST00000489010
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
597309994	GWAS1406068_H	vaginal microbiome measurement QTL GWAS1406068 (human)		0.000001	vaginal microbiome measurement		22	29743836	29743837	Human
1581529	BP71_H	Blood pressure QTL 71 (human)	2	0.001	Blood pressure	pulse pressure	22	11094966	37094966	Human
597325864	GWAS1421938_H	non-high density lipoprotein cholesterol measurement QTL GWAS1421938 (human)		3e-13	non-high density lipoprotein cholesterol measurement	blood non-high density lipoprotein cholesterol level (CMO:0003967)	22	29755711	29755712	Human
597309993	GWAS1406067_H	vaginal microbiome measurement QTL GWAS1406067 (human)		0.000001	vaginal microbiome measurement		22	29739090	29739091	Human
2289428	BW313_H	Body weight QTL 313 (human)	2.09	0.0015	Body weight	BMI	22	11344284	37344284	Human
597080945	GWAS1177019_H	lymphocyte count QTL GWAS1177019 (human)		1e-11	lymphocyte count	blood lymphocyte count (CMO:0000031)	22	29742559	29742560	Human
597584230	GWAS1641090_H	mean corpuscular hemoglobin concentration QTL GWAS1641090 (human)		2e-21	mean corpuscular hemoglobin concentration	mean corpuscular hemoglobin concentration (CMO:0000291)	22	29739939	29739940	Human
596962524	GWAS1082043_H	irritable bowel syndrome, forced expiratory volume QTL GWAS1082043 (human)		1e-08	irritable bowel syndrome, forced expiratory volume		22	29746414	29746415	Human
597452646	GWAS1548720_H	irritable bowel syndrome, forced expiratory volume QTL GWAS1548720 (human)		1e-08	irritable bowel syndrome, forced expiratory volume	forced expiratory volume (CMO:0000254)	22	29746414	29746415	Human
597584770	GWAS1641630_H	mean corpuscular hemoglobin concentration QTL GWAS1641630 (human)		8e-20	mean corpuscular hemoglobin concentration	mean corpuscular hemoglobin concentration (CMO:0000291)	22	29739939	29739940	Human
597585457	GWAS1642317_H	type 2 diabetes mellitus QTL GWAS1642317 (human)		4e-09	type 2 diabetes mellitus		22	29761951	29761952	Human

RH45735

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	22	30,126,993 - 30,127,163	UniSTS	GRCh37
Build 36	22	28,456,993 - 28,457,163	RGD	NCBI36
Celera	22	13,926,720 - 13,926,890	RGD
Cytogenetic Map	22	q12.2	UniSTS
Cytogenetic Map	22	cen-q12.3	UniSTS
HuRef	22	13,090,627 - 13,090,797	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	entire extraembryonic component	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	pharyngeal arch	renal system	reproductive system	respiratory system	sensory system	visual system
1204	2439	2788	2253	4974	1726	2351	6	624	1951	465	2270	7306	6472	53	3734	1	852	1744	1617	174	1


RefSeq Transcripts	NM_001003692	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001318129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_019103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_054325795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AA312132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC004882	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK123261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK292671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL160311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC009717	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BG285784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BK005198	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ931527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BU598307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR456353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR457393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DT217179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	KT584178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENST00000344318 ⟹ ENSP00000344241

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	22	29,730,956 - 29,767,007 (-)	Ensembl

Ensembl Acc Id:

ENST00000489010

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	22	29,746,167 - 29,767,011 (-)	Ensembl

RefSeq Acc Id:

NM_001003692 ⟹ NP_001003692

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	22	29,730,956 - 29,767,007 (-)	NCBI
GRCh37	22	30,126,945 - 30,163,000 (-)	NCBI
Build 36	22	28,456,945 - 28,492,969 (-)	NCBI Archive
Celera	22	13,926,672 - 13,962,699 (-)	RGD
HuRef	22	13,090,579 - 13,126,584 (-)	RGD
CHM1_1	22	30,086,138 - 30,122,154 (-)	NCBI
T2T-CHM13v2.0	22	30,194,319 - 30,230,386 (-)	NCBI

Sequence:

show sequence

AGTACGCGACGCGAGGACGCAGGAGGAGGAGCCCGGAGCTGCAGCCACCGGGGAGCCAGGTACCTTCCGCGAGACGTCGAGGGGCGAGTCCTAGTCTCTTTTCTCCGCACTGGAAGACTTGAACACTT
CCTTCTCTGCAGCAAAGCACCTGCTCTGAGTGGCCATGGGGAAGCGATACTTCTGTGACTACTGCGACCGCTCCTTCCAGGACAACCTCCACAACCGCAAGAAGCACCTGAACGGGCTGCAGCACCTC
AAGGCCAAGAAGGTCTGGTACGACATGTTCCGAGATGCAGCTGCCATCTTGCTGGATGAGCAGAACAAGCGGCCCTGCAGGAAGTTTCTACTGACAGGCCAGTGCGACTTTGGCTCCAACTGCAGATT
TTCCCACATGTCAGAGCGAGACCTGCAGGAGCTGAGCATCCAGGTGGAGGAGGAGAGGCGAGCCAGGGAGTGGCTACTAGATGCTCCTGAGCTCCCCGAGGGCCATCTGGAGGACTGGCTGGAGAAGA
GAGCCAAGCGGCTGAGCTCAGCCCCAAGTAGCAGGGCTGAACCCATCAGAACCACTGTCTTCCAGTACCCCGTGGGCTGGCCACCAGTTCAGGAGCTGCCTCCATCCCTGCGGGCACCCCCACCTGGG
GGGTGGCCTCTGCAGCCCAGAGTCCAGTGGGGCTGAGCCCCTTGCCCCCGACTGACCCCCACGTGGTCACTTTTCTCATCAGTCACAATAGGAAGCCAAGCCCGGTTCCTGCTACGCCCCATGGAGGC
TCCGAGACCATCTGCCCAGCCTCACTGAGGCTCAGGACACGGCCACACCAAGTGCAGCCCTCGTCCTGGGTCTGCACCGGGCAGCTCTCCCCTCACTCTCCTCCACCTGCCCCCCTGCTTCTTAAGAA
GATGGGGGAGAAAACTTCCAAATGTTTATAAAGAAAGTCTGTCACCACA

hide sequence

RefSeq Acc Id:

NM_001318129 ⟹ NP_001305058

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	22	29,730,956 - 29,767,007 (-)	NCBI
CHM1_1	22	30,086,138 - 30,122,185 (-)	NCBI
T2T-CHM13v2.0	22	30,194,319 - 30,230,386 (-)	NCBI

Sequence:

show sequence

AGTACGCGACGCGAGGACGCAGGAGGAGGAGCCCGGAGCTGCAGCCACCGGGGAGCCAGGCAGC
AAAGCACCTGCTCTGAGTGGCCATGGGGAAGCGATACTTCTGTGACTACTGCGACCGCTCCTTCCAGGACAACCTCCACAACCGCAAGAAGCACCTGAACGGGCTGCAGCACCTCAAGGCCAAGAAGG
TCTGGTACGACATGTTCCGAGATGCAGCTGCCATCTTGCTGGATGAGCAGAACAAGCGGCCCTGCAGGAAGTTTCTACTGACAGGCCAGTGCGACTTTGGCTCCAACTGCAGATTTTCCCACATGTCA
GAGCGAGACCTGCAGGAGCTGAGCATCCAGGTGGAGGAGGAGAGGCGAGCCAGGGAGTGGCTACTAGATGCTCCTGAGCTCCCCGAGGGCCATCTGGAGGACTGGCTGGAGAAGAGAGCCAAGCGGCT
GAGCTCAGCCCCAAGTAGCAGGGCTGAACCCATCAGAACCACTGTCTTCCAGTACCCCGTGGGCTGGCCACCAGTTCAGGAGCTGCCTCCATCCCTGCGGGCACCCCCACCTGGGGGGTGGCCTCTGC
AGCCCAGAGTCCAGTGGGGCTGAGCCCCTTGCCCCCGACTGACCCCCACGTGGTCACTTTTCTCATCAGTCACAATAGGAAGCCAAGCCCGGTTCCTGCTACGCCCCATGGAGGCTCCGAGACCATCT
GCCCAGCCTCACTGAGGCTCAGGACACGGCCACACCAAGTGCAGCCCTCGTCCTGGGTCTGCACCGGGCAGCTCTCCCCTCACTCTCCTCCACCTGCCCCCCTGCTTCTTAAGAAGATGGGGGAGAAA
ACTTCCAAATGTTTATAAAGAAAGTCTGTCACCACA

hide sequence

RefSeq Acc Id:

NM_019103 ⟹ NP_061976

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	22	29,730,956 - 29,767,007 (-)	NCBI
GRCh37	22	30,126,945 - 30,163,000 (-)	NCBI
Build 36	22	28,456,945 - 28,492,969 (-)	NCBI Archive
Celera	22	13,926,672 - 13,962,699 (-)	RGD
HuRef	22	13,090,579 - 13,126,584 (-)	RGD
CHM1_1	22	30,086,138 - 30,122,154 (-)	NCBI
T2T-CHM13v2.0	22	30,194,319 - 30,230,386 (-)	NCBI

Sequence:

show sequence

AGTACGCGACGCGAGGACGCAGGAGGAGGAGCCCGGAGCTGCAGCCACCGGGGAGCCAGGTACC
TTCCGCGAGACGTCGAGGGGCGAGTCCTAGTCTCTTTTCTCCGCACTGGAAGACTTGAACACTTCCTTCTCTGGTCTCTGTCACCCAGGCTGGAGTGTAGTGGCGCAATCTCAGCTGGCTGGAGCCTT
GACCTCCTTGGGCTCAAGCTATCCTCCCACCTCAGCCTCTCAAATAGCTGGGACTACAGGCAGCAAAGCACCTGCTCTGAGTGGCCATGGGGAAGCGATACTTCTGTGACTACTGCGACCGCTCCTTC
CAGGACAACCTCCACAACCGCAAGAAGCACCTGAACGGGCTGCAGCACCTCAAGGCCAAGAAGGTCTGGTACGACATGTTCCGAGATGCAGCTGCCATCTTGCTGGATGAGCAGAACAAGCGGCCCTG
CAGGAAGTTTCTACTGACAGGCCAGTGCGACTTTGGCTCCAACTGCAGATTTTCCCACATGTCAGAGCGAGACCTGCAGGAGCTGAGCATCCAGGTGGAGGAGGAGAGGCGAGCCAGGGAGTGGCTAC
TAGATGCTCCTGAGCTCCCCGAGGGCCATCTGGAGGACTGGCTGGAGAAGAGAGCCAAGCGGCTGAGCTCAGCCCCAAGTAGCAGGGCTGAACCCATCAGAACCACTGTCTTCCAGTACCCCGTGGGC
TGGCCACCAGTTCAGGAGCTGCCTCCATCCCTGCGGGCACCCCCACCTGGGGGGTGGCCTCTGCAGCCCAGAGTCCAGTGGGGCTGAGCCCCTTGCCCCCGACTGACCCCCACGTGGTCACTTTTCTC
ATCAGTCACAATAGGAAGCCAAGCCCGGTTCCTGCTACGCCCCATGGAGGCTCCGAGACCATCTGCCCAGCCTCACTGAGGCTCAGGACACGGCCACACCAAGTGCAGCCCTCGTCCTGGGTCTGCAC
CGGGCAGCTCTCCCCTCACTCTCCTCCACCTGCCCCCCTGCTTCTTAAGAAGATGGGGGAGAAAACTTCCAAATGTTTATAAAGAAAGTCTGTCACCACA

hide sequence

RefSeq Acc Id:

XM_054325795 ⟹ XP_054181770

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
T2T-CHM13v2.0	22	30,194,319 - 30,230,905 (-)	NCBI


Protein RefSeqs	NP_001003692	(Get FASTA)	NCBI Sequence Viewer
	NP_001305058	(Get FASTA)	NCBI Sequence Viewer
	NP_061976	(Get FASTA)	NCBI Sequence Viewer
	XP_054181770	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH09717	(Get FASTA)	NCBI Sequence Viewer
	BAF85360	(Get FASTA)	NCBI Sequence Viewer
	CAB77284	(Get FASTA)	NCBI Sequence Viewer
	CAG30239	(Get FASTA)	NCBI Sequence Viewer
	CAG33674	(Get FASTA)	NCBI Sequence Viewer
	DAA05496	(Get FASTA)	NCBI Sequence Viewer
	EAW59837	(Get FASTA)	NCBI Sequence Viewer
	EAW59838	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000344241
	ENSP00000344241.3
GenBank Protein	Q9UDW3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_061976 ⟸ NM_019103
- UniProtKB:	A8K9F6 (UniProtKB/Swiss-Prot), Q9UDW3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSSAPSSR AEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG hide sequence

RefSeq Acc Id:	NP_001003692 ⟸ NM_001003692
- UniProtKB:	A8K9F6 (UniProtKB/Swiss-Prot), Q9UDW3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTG QCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG hide sequence

RefSeq Acc Id:	NP_001305058 ⟸ NM_001318129
- UniProtKB:	A8K9F6 (UniProtKB/Swiss-Prot), Q9UDW3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MGKRYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLDEQNKRPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERRAREWLLDAPELPEGHLEDWLEKRAKRLSSAPSSR AEPIRTTVFQYPVGWPPVQELPPSLRAPPPGGWPLQPRVQWG hide sequence

Ensembl Acc Id:

ENSP00000344241 ⟸ ENST00000344318

RefSeq Acc Id:	XP_054181770 ⟸ XM_054325795
- Peptide Label:	isoform X1
- UniProtKB:	Q9UDW3 (UniProtKB/Swiss-Prot), A8K9F6 (UniProtKB/Swiss-Prot)

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9UDW3-F1-model_v2	AlphaFold	Q9UDW3	1-170	view protein structure

RGD ID:

6799922

Promoter ID:

HG_KWN:42263

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, Jurkat, K562, Lymphoblastoid, NB4

Transcripts:

ENST00000332801, ENST00000406782, NM_001003684, NM_001003692, NM_013387, NM_019103, OTTHUMT00000322115

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	22	28,492,376 - 28,493,472 (+)	MPROMDB

RGD ID:

13603652

Promoter ID:

EPDNEW_H28010

Type:

initiation region

Name:

ZMAT5_1

Description:

zinc finger matrin-type 5

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	22	29,767,007 - 29,767,067	EPDNEW

Database	Acc Id	Source(s)
COSMIC	ZMAT5	COSMIC
Ensembl Genes	ENSG00000100319	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENST00000344318	ENTREZGENE
	ENST00000344318.4	UniProtKB/Swiss-Prot
Gene3D-CATH	Classic Zinc Finger	UniProtKB/Swiss-Prot
	Zinc finger, CCCH-type	UniProtKB/Swiss-Prot
GTEx	ENSG00000100319	GTEx
HGNC ID	HGNC:28046	ENTREZGENE
Human Proteome Map	ZMAT5	Human Proteome Map
InterPro	U1-CZ_Znf_C2H2	UniProtKB/Swiss-Prot
	Znf_C2H2_sf	UniProtKB/Swiss-Prot
	Znf_CCCH	UniProtKB/Swiss-Prot
	Znf_CCCH_sf	UniProtKB/Swiss-Prot
KEGG Report	hsa:55954	UniProtKB/Swiss-Prot
NCBI Gene	55954	ENTREZGENE
OMIM	619741	OMIM
PANTHER	NUCLEASE-RELATED	UniProtKB/Swiss-Prot
	ZINC FINGER MATRIN-TYPE PROTEIN 5	UniProtKB/Swiss-Prot
Pfam	zf-CCCH	UniProtKB/Swiss-Prot
	zf-U1	UniProtKB/Swiss-Prot
PharmGKB	PA142670524	PharmGKB
PROSITE	ZF_C3H1	UniProtKB/Swiss-Prot
SMART	ZnF_C3H1	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF57667	UniProtKB/Swiss-Prot
	SSF90229	UniProtKB/Swiss-Prot
UniProt	A8K9F6	ENTREZGENE
	Q9UDW3	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	A8K9F6	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-16	ZMAT5	zinc finger matrin-type 5		zinc finger, matrin-type 5	Symbol and/or name change	5135510	APPROVED
2011-07-27	ZMAT5	zinc finger, matrin-type 5	ZMAT5	zinc finger, matrin type 5	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar