Tada2a (transcriptional adaptor 2A) - Rat Genome Database

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Gene: Tada2a (transcriptional adaptor 2A) Rattus norvegicus
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Symbol: Tada2a
Name: transcriptional adaptor 2A
RGD ID: 1309959
Description: Predicted to enable chromatin binding activity and transcription coactivator activity. Predicted to contribute to histone acetyltransferase activity. Predicted to be involved in several processes, including regulation of cell division; regulation of embryonic development; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including chromatin organization; regulation of protein modification process; and regulation of protein stability. Predicted to be located in mitotic spindle. Predicted to be part of ATAC complex and SAGA complex. Predicted to be active in nucleus. Orthologous to human TADA2A (transcriptional adaptor 2A); PARTICIPATES IN RNA polymerase II transcription initiation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADA2-like protein; LOC360581; Tada2l; transcriptional adapter 2-alpha; transcriptional adapter 2-like; transcriptional adaptor 2 (ADA2 homolog, yeast)-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,463,966 - 69,511,612 (-)NCBIGRCr8
mRatBN7.21068,966,502 - 69,014,149 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,966,502 - 69,014,105 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,586,475 - 73,634,083 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,091,491 - 73,139,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,555,914 - 68,603,517 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,393,701 - 71,441,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,393,692 - 71,441,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01071,307,409 - 71,354,792 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,365,950 - 72,413,305 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,380,321 - 72,427,675 (-)NCBI
Celera1067,895,248 - 67,942,367 (-)NCBICelera
Cytogenetic Map10q26NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
ATAC complex  (IEA,ISO)
mitotic spindle  (IEA,ISO)
nucleus  (IBA,IEA,ISO)
SAGA complex  (ISO)
SAGA-type complex  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
6. ATAC-king the complexity of SAGA during evolution. Spedale G, etal., Genes Dev. 2012 Mar 15;26(6):527-41. doi: 10.1101/gad.184705.111.
Additional References at PubMed
PMID:9674425   PMID:12477932   PMID:15489334   PMID:17218081   PMID:20508642   PMID:20562830  


Genomics

Comparative Map Data
Tada2a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81069,463,966 - 69,511,612 (-)NCBIGRCr8
mRatBN7.21068,966,502 - 69,014,149 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1068,966,502 - 69,014,105 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1073,586,475 - 73,634,083 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01073,091,491 - 73,139,094 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01068,555,914 - 68,603,517 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01071,393,701 - 71,441,435 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1071,393,692 - 71,441,389 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01071,307,409 - 71,354,792 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41072,365,950 - 72,413,305 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11072,380,321 - 72,427,675 (-)NCBI
Celera1067,895,248 - 67,942,367 (-)NCBICelera
Cytogenetic Map10q26NCBI
TADA2A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381737,406,886 - 37,479,725 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1737,406,886 - 37,479,725 (+)EnsemblGRCh38hg38GRCh38
GRCh371735,766,977 - 35,839,830 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361732,841,425 - 32,911,339 (+)NCBINCBI36Build 36hg18NCBI36
Celera1732,589,436 - 32,660,208 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1731,705,328 - 31,774,822 (+)NCBIHuRef
CHM1_11735,798,449 - 35,868,684 (+)NCBICHM1_1
T2T-CHM13v2.01738,397,046 - 38,466,403 (+)NCBIT2T-CHM13v2.0
Tada2a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391183,969,746 - 84,020,466 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1183,969,746 - 84,020,426 (-)EnsemblGRCm39 Ensembl
GRCm381184,078,920 - 84,129,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1184,078,920 - 84,129,600 (-)EnsemblGRCm38mm10GRCm38
MGSCv371183,892,422 - 83,943,070 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361183,895,115 - 83,945,763 (-)NCBIMGSCv36mm8
Celera1193,684,540 - 93,738,158 (-)NCBICelera
Cytogenetic Map11CNCBI
cM Map1151.29NCBI
Tada2a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955451549,028 - 587,996 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955451548,373 - 599,739 (-)NCBIChiLan1.0ChiLan1.0
TADA2A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21927,272,723 - 27,347,127 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11729,156,125 - 29,230,503 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01719,595,055 - 19,670,090 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11719,897,659 - 19,967,926 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1719,897,659 - 19,967,926 (-)Ensemblpanpan1.1panPan2
TADA2A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1937,188,193 - 37,241,605 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl937,188,249 - 37,241,512 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha936,412,780 - 36,466,137 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0937,998,547 - 38,052,436 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl937,998,612 - 38,053,162 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1936,779,751 - 36,833,352 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0937,067,593 - 37,120,965 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0937,154,265 - 37,207,674 (+)NCBIUU_Cfam_GSD_1.0
Tada2a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560236,150,457 - 36,201,375 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936490872,945 - 924,614 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936490873,675 - 924,582 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TADA2A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1238,875,250 - 38,928,005 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11238,875,156 - 38,928,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21240,496,523 - 40,549,428 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TADA2A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11630,303,858 - 30,374,104 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1630,300,532 - 30,374,078 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660771,025,277 - 1,098,948 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tada2a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248714,415,409 - 4,469,359 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248714,412,703 - 4,478,275 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tada2a
200 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:317
Count of miRNA genes:192
Interacting mature miRNAs:228
Transcripts:ENSRNOT00000003699
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549846Scl47Serum cholesterol level QTL 473.6blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)105057470795574707Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631565Hcuc4Hepatic copper content QTL 44.15liver copper amount (VT:0003065)liver copper weight to liver dry weight ratio (CMO:0001512)106694181373452992Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
2293669Bmd33Bone mineral density QTL 334.50.0001femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)104944455181709989Rat
152025224Bw193Body weight QTL 1936.47body mass (VT:0001259)105166340575085664Rat
631552Vetf2Vascular elastic tissue fragility QTL 24.50.0002aorta elastic tissue integrity trait (VT:0010556)artery internal elastic lamina non-tumorous lesion count (CMO:0001913)104114263386142633Rat
61449Ciaa2CIA Autoantibody QTL 27.1blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)1063221094107211142Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1298078Stresp5Stress response QTL 52.990.00025blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)1042045676104670812Rat
2293679Bmd30Bone mineral density QTL 303.50.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
1549831Bss6Bone structure and strength QTL 64lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)1057576521102576521Rat
70164Bw21Body weight QTL 214.360.00005body mass (VT:0001259)body weight (CMO:0000012)105379749498952626Rat
61463Bp12Blood pressure QTL 126.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104133325886333258Rat
8694173Bw149Body weight QTL 1494.380.001body mass (VT:0001259)body weight gain (CMO:0000420)104444169989441699Rat
2300218Hpcl2Hepatic cholesterol level QTL 2liver cholesterol amount (VT:0010498)liver cholesterol level (CMO:0001597)104502965095600334Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
70171Cari1Carrageenan-induced inflammation QTL 14.90.0005hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)1053797385107211142Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1642290Bp299Blood pressure QTL 299arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106823013469282520Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2313103Bss80Bone structure and strength QTL 8020.0001tibia strength trait (VT:1000284)tibia midshaft endosteal cross-sectional area (CMO:0001716)1062057807107057807Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
70188BpQTLcluster1Blood pressure QTL cluster 14.864arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)14232313287323132Rat
2313105Bss79Bone structure and strength QTL 791.80.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)1062057807107057807Rat
9589030Epfw9Epididymal fat weight QTL 919.240.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)104444169989441699Rat
1357344Bp249Blood pressure QTL 2490.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106674365598003205Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
2293652Bmd22Bone mineral density QTL 224.90.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)104944455181709989Rat
70198BpQTLcluster9Blood pressure QTL cluster 92.94arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)104232313287323132Rat
2306970Anxrr22Anxiety related response QTL 225.95fear/anxiety-related behavior trait (VT:1000241)number of periods of voluntary immobility (CMO:0001045)106134527698211570Rat
1359017Hrtrt21Heart rate QTL 212.4heart pumping trait (VT:2000009)heart rate (CMO:0000002)105177294096772940Rat
7387312Bw125Body weight QTL 12530.0047retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight (CMO:0000356)1064890616107211142Rat
2312672Insul15Insulin level QTL 150.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1057134272102134272Rat
2317029Aia19Adjuvant induced arthritis QTL 192.98joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)1066978955107211142Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
61387Bp1Blood pressure QTL 15.1arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)1051770177107211142Rat
2317039Aia6Adjuvant induced arthritis QTL 64.31joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)1066978955107211142Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
2317043Aia7Adjuvant induced arthritis QTL 73.82joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)103756507982565079Rat
2317042Aia20Adjuvant induced arthritis QTL 203.38joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)103756507982565079Rat
2298481Eau9Experimental allergic uveoretinitis QTL 90.0169uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)106592723382565079Rat
61396Bp9Blood pressure QTL 94.80.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068420376107211142Rat
70363Bp71Blood pressure QTL 710.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)106134527681714865Rat
61402Niddm3Non-insulin dependent diabetes mellitus QTL 34.58blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)106134541382564856Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
70364Bp72Blood pressure QTL 72arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)105112110096121100Rat
10450498Bp384Blood pressure QTL 3840.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1067750049107211142Rat
2293698Bss43Bone structure and strength QTL 435.330.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra cross-sectional area (CMO:0001689)1059209888104209888Rat
631530Tls3T-lymphoma susceptibility QTL 300.0001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)105177461295600334Rat
2289985Bp305Blood pressure QTL 305arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)106750210873579767Rat
1354608Cm33Cardiac mass QTL 332.8heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)105480929299809292Rat
1558643Cm44Cardiac mass QTL 444.80.0000368heart mass (VT:0007028)heart wet weight (CMO:0000069)106134527699703528Rat
631535Cm51Cardiac mass QTL 513heart mass (VT:0007028)calculated heart weight (CMO:0000073)105178628291669536Rat
1576319Cia29Collagen induced arthritis QTL 29joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103397392178973921Rat
8552805Bw145Body weight QTL 1452.2body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)104194452678307017Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2293705Bmd25Bone mineral density QTL 257.10.0001femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)104944455181709989Rat
1576308Schws1Schwannoma susceptibility QTL 10.0041nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)1040035094102359817Rat
631269Cia22Collagen induced arthritis QTL 228.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
7207811Bmd90Bone mineral density QTL 905.2femur size trait (VT:1000369)femoral neck cross-sectional area (CMO:0001697)104944455181709989Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
631270Cia23Collagen induced arthritis QTL 233.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1040035094104060283Rat
7411614Foco18Food consumption QTL 180.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)104444169989441699Rat
6893336Cm75Cardiac mass QTL 750.10.87heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)106134527699703528Rat
631547Bp87Blood pressure QTL 874.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)104736947092369470Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2312662Slep8Serum leptin concentration QTL 80.05blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1057134272102134272Rat
6893342Cm78Cardiac mass QTL 780.10.88heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)104287676679813922Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
1642980Bp300Blood pressure QTL 300arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1068383129107211142Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat
2312668Scl65Serum cholesterol level QTL 650.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1057134272102134272Rat

Markers in Region
AU046428  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25142,031,531 - 142,032,108 (+)MAPPERmRatBN7.2
mRatBN7.21068,982,371 - 68,982,576 (+)MAPPERmRatBN7.2
Rnor_6.01071,409,573 - 71,409,777NCBIRnor6.0
Rnor_6.05147,895,949 - 147,896,525NCBIRnor6.0
Rnor_5.05151,623,765 - 151,624,341UniSTSRnor5.0
Rnor_5.01071,323,281 - 71,323,485UniSTSRnor5.0
RGSC_v3.41072,381,818 - 72,382,022UniSTSRGSC3.4
Celera1067,910,754 - 67,910,958UniSTS
Celera5140,504,952 - 140,505,528UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map10q26UniSTS
RH139765  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21068,966,585 - 68,966,785 (+)MAPPERmRatBN7.2
Rnor_6.01071,393,789 - 71,393,988NCBIRnor6.0
Rnor_5.01071,307,497 - 71,307,696UniSTSRnor5.0
RGSC_v3.41072,366,034 - 72,366,233UniSTSRGSC3.4
Cytogenetic Map10q26UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000003699   ⟹   ENSRNOP00000003699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1068,966,502 - 69,014,105 (-)Ensembl
Rnor_6.0 Ensembl1071,393,692 - 71,441,389 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000087769   ⟹   ENSRNOP00000071555
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1068,966,502 - 69,014,105 (-)Ensembl
Rnor_6.0 Ensembl1071,394,313 - 71,439,540 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119062   ⟹   ENSRNOP00000089252
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1068,966,504 - 69,007,134 (-)Ensembl
RefSeq Acc Id: NM_001012141   ⟹   NP_001012141
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,569 (-)NCBI
mRatBN7.21068,966,502 - 69,014,106 (-)NCBI
Rnor_6.01071,393,705 - 71,441,402 (-)NCBI
Rnor_5.01071,307,409 - 71,354,792 (-)NCBI
RGSC_v3.41072,365,950 - 72,413,305 (-)RGD
Celera1067,895,248 - 67,942,367 (-)RGD
Sequence:
RefSeq Acc Id: XM_006247041   ⟹   XP_006247103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,612 (-)NCBI
mRatBN7.21068,966,502 - 69,014,149 (-)NCBI
Rnor_6.01071,393,701 - 71,441,435 (-)NCBI
Rnor_5.01071,307,409 - 71,354,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006247042   ⟹   XP_006247104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,591 (-)NCBI
mRatBN7.21068,966,502 - 69,014,128 (-)NCBI
Rnor_6.01071,393,701 - 71,441,428 (-)NCBI
Rnor_5.01071,307,409 - 71,354,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086362   ⟹   XP_038942290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,551 (-)NCBI
mRatBN7.21068,966,502 - 69,014,007 (-)NCBI
RefSeq Acc Id: XM_039086363   ⟹   XP_038942291
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,591 (-)NCBI
mRatBN7.21068,966,502 - 69,014,128 (-)NCBI
RefSeq Acc Id: XM_039086364   ⟹   XP_038942292
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,607 (-)NCBI
mRatBN7.21068,966,502 - 69,014,149 (-)NCBI
RefSeq Acc Id: XM_039086365   ⟹   XP_038942293
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,501,601 (-)NCBI
mRatBN7.21068,966,502 - 69,004,143 (-)NCBI
RefSeq Acc Id: XM_063269381   ⟹   XP_063125451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,466,935 - 69,511,612 (-)NCBI
RefSeq Acc Id: XM_063269382   ⟹   XP_063125452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81069,463,966 - 69,511,609 (-)NCBI
RefSeq Acc Id: NP_001012141   ⟸   NM_001012141
- UniProtKB: A1EC76 (UniProtKB/Swiss-Prot),   Q6AYE3 (UniProtKB/Swiss-Prot),   A0A8I6ABC7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247104   ⟸   XM_006247042
- Peptide Label: isoform X3
- UniProtKB: A0A8L2UHP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006247103   ⟸   XM_006247041
- Peptide Label: isoform X2
- UniProtKB: A0A0G2K0R7 (UniProtKB/TrEMBL),   A0A8I6ABC7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071555   ⟸   ENSRNOT00000087769
Ensembl Acc Id: ENSRNOP00000003699   ⟸   ENSRNOT00000003699
RefSeq Acc Id: XP_038942292   ⟸   XM_039086364
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038942291   ⟸   XM_039086363
- Peptide Label: isoform X4
- UniProtKB: A0A8L2UHP0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942290   ⟸   XM_039086362
- Peptide Label: isoform X1
- UniProtKB: Q6AYE3 (UniProtKB/Swiss-Prot),   A1EC76 (UniProtKB/Swiss-Prot),   A0A8I6ABC7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942293   ⟸   XM_039086365
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000089252   ⟸   ENSRNOT00000119062
RefSeq Acc Id: XP_063125452   ⟸   XM_063269382
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063125451   ⟸   XM_063269381
- Peptide Label: isoform X5
Protein Domains
HTH myb-type   Myb-like   SANT   SWIRM   ZZ-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYE3-F1-model_v2 AlphaFold Q6AYE3 1-443 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13697547
Promoter ID:EPDNEW_R8072
Type:initiation region
Name:Tada2a_1
Description:transcriptional adaptor 2A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01071,441,384 - 71,441,444EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309959 AgrOrtholog
BioCyc Gene G2FUF-23846 BioCyc
Ensembl Genes ENSRNOG00000002757 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00055027251 UniProtKB/Swiss-Prot
  ENSRNOG00060023379 UniProtKB/Swiss-Prot
  ENSRNOG00065018986 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000003699.6 UniProtKB/TrEMBL
  ENSRNOT00000087769.2 UniProtKB/TrEMBL
  ENSRNOT00000119062.1 UniProtKB/TrEMBL
  ENSRNOT00055047324 UniProtKB/Swiss-Prot
  ENSRNOT00060040916 UniProtKB/Swiss-Prot
  ENSRNOT00065032069 UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.60.90 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7123007 IMAGE-MGC_LOAD
InterPro ADA2-like_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ada2/TADA2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Homeobox-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myb_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT/Myb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SANT_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TADA2A_B-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_ZZ_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:360581 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94047 IMAGE-MGC_LOAD
NCBI Gene 360581 ENTREZGENE
PANTHER TRANSCRIPTIONAL ADAPTER 2-ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Myb_DNA-binding UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TADA2A-like_3rd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tada2a PhenoGen
PIRSF Transcriptional_adaptor_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HTH_MYB UniProtKB/TrEMBL
  MYB_LIKE UniProtKB/TrEMBL
  SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SWIRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_ZZ_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002757 RatGTEx
  ENSRNOG00055027251 RatGTEx
  ENSRNOG00060023379 RatGTEx
  ENSRNOG00065018986 RatGTEx
SMART SANT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF46689 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K0R7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ABC7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2UHP0 ENTREZGENE, UniProtKB/TrEMBL
  A1EC76 ENTREZGENE
  A1EC78_RAT UniProtKB/TrEMBL
  Q6AYE3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary A1EC76 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Tada2a  transcriptional adaptor 2A  Tada2l  transcriptional adaptor 2 (ADA2 homolog, yeast)-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Tada2l  transcriptional adaptor 2 (ADA2 homolog, yeast)-like  Tada2l_predicted  transcriptional adaptor 2 (ADA2 homolog, yeast)-like (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tada2l_predicted  transcriptional adaptor 2 (ADA2 homolog, yeast)-like (predicted)      Symbol and Name status set to approved 70820 APPROVED