Wdr31 (WD repeat domain 31) - Rat Genome Database

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Gene: Wdr31 (WD repeat domain 31) Rattus norvegicus
Analyze
Symbol: Wdr31
Name: WD repeat domain 31
RGD ID: 1309367
Description: Orthologous to human WDR31 (WD repeat domain 31); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC298096; WD repeat-containing protein 31
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,914,338 - 80,933,022 (-)NCBIGRCr8
mRatBN7.2575,897,074 - 75,917,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,898,353 - 75,917,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,298,350 - 78,316,693 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,115,447 - 80,133,790 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,090,957 - 80,109,300 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,305,526 - 78,324,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,305,526 - 78,324,278 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,425,258 - 82,444,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,442,642 - 79,461,272 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,447,754 - 79,466,385 (-)NCBI
Celera574,840,523 - 74,859,032 (-)NCBICelera
Cytogenetic Map5q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932  


Genomics

Comparative Map Data
Wdr31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,914,338 - 80,933,022 (-)NCBIGRCr8
mRatBN7.2575,897,074 - 75,917,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,898,353 - 75,917,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,298,350 - 78,316,693 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,115,447 - 80,133,790 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,090,957 - 80,109,300 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,305,526 - 78,324,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,305,526 - 78,324,278 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,425,258 - 82,444,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,442,642 - 79,461,272 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,447,754 - 79,466,385 (-)NCBI
Celera574,840,523 - 74,859,032 (-)NCBICelera
Cytogenetic Map5q24NCBI
WDR31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,313,222 - 113,340,275 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,313,222 - 113,340,298 (-)EnsemblGRCh38hg38GRCh38
GRCh379116,075,502 - 116,102,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,117,751 - 115,142,388 (-)NCBINCBI36Build 36hg18NCBI36
Build 349113,157,484 - 113,182,121NCBI
Celera986,725,549 - 86,750,228 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,685,302 - 85,710,020 (-)NCBIHuRef
CHM1_19116,224,589 - 116,249,279 (-)NCBICHM1_1
T2T-CHM13v2.09125,512,036 - 125,539,119 (-)NCBIT2T-CHM13v2.0
Wdr31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,366,890 - 62,389,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,366,890 - 62,389,133 (-)EnsemblGRCm39 Ensembl
GRCm38462,448,653 - 62,470,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,448,653 - 62,470,896 (-)EnsemblGRCm38mm10GRCm38
MGSCv37462,114,768 - 62,131,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,940,095 - 61,957,233 (-)NCBIMGSCv36mm8
Celera461,123,938 - 61,141,015 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.14NCBI
Wdr31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,150,293 - 14,168,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,150,881 - 14,168,256 (+)NCBIChiLan1.0ChiLan1.0
WDR31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,032,727 - 26,064,646 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,035,105 - 26,066,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,413,199 - 84,442,635 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,787,170 - 112,813,503 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,787,170 - 112,813,503 (-)Ensemblpanpan1.1panPan2
WDR31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,680,778 - 67,699,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,680,778 - 67,695,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1166,084,926 - 66,104,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,805,006 - 68,824,156 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,804,584 - 68,824,143 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,322,588 - 67,341,848 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,344,492 - 67,363,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,090,574 - 68,109,871 (-)NCBIUU_Cfam_GSD_1.0
Wdr31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,978,352 - 182,997,614 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559270,272 - 288,214 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559269,005 - 288,159 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,945,953 - 253,966,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,942,570 - 253,966,769 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,697,707 - 284,718,169 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WDR31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,233,434 - 26,257,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,242,384 - 26,261,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,416 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wdr31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,764,839 - 21,780,561 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476021,760,148 - 21,781,027 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Wdr31
115 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:40
Count of miRNA genes:37
Interacting mature miRNAs:40
Transcripts:ENSRNOT00000048904
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298067Scl15Serum cholesterol level QTL 154.80.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)53321566578215665Rat
1300115Hrtrt7Heart rate QTL 72.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)54786906290099692Rat
1357396Bw44Body weight QTL 444.19body mass (VT:0001259)body weight (CMO:0000012)568984307104251008Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
61380Edpm5Estrogen-dependent pituitary mass QTL 54.50.92pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)568984307104251008Rat
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
61386Bp49Blood pressure QTL 4916.6cerebrum integrity trait (VT:0010549)brain infarction volume (CMO:0001013)56029343498603051Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1357402Bw46Body weight QTL 464.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
2302381Bw84Body weight QTL 844.47body mass (VT:0001259)body mass index (BMI) (CMO:0000105)568984307104251008Rat
1598807Glom12Glomerulus QTL 122.7kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)53321566578215665Rat
1302786Kidm8Kidney mass QTL 828.15kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)53321566578215665Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
7411561Bw134Body weight QTL 134240.001body mass (VT:0001259)body weight gain (CMO:0000420)54946360094463600Rat
2303615Vencon7Ventilatory control QTL 70.001respiration trait (VT:0001943)respiration rate (CMO:0000289)55098389595983895Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
1576317Eutr2Estrogen induced uterine response QTL 20.01uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)534730116104251008Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat
1331773Scl26Serum cholesterol level QTL 263.065blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)54372665686724018Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
61359EaexExperimental allergic encephalomyelitis QTL x3nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)555715622100715622Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
9589025Epfw7Epididymal fat weight QTL 720.660.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)54946360094463600Rat
2303574Gluco42Glucose level QTL 422blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)55349671998496719Rat
2290005Mcs24Mammary carcinoma susceptibility QTL 24mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)564719390109719390Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
2306971Anxrr21Anxiety related response QTL 219.47fear/anxiety-related behavior trait (VT:1000241)number of entries into a discrete space in an experimental apparatus (CMO:0000960)566174080124160948Rat
2316954Rf57Renal function QTL 570kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)55979352890450144Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
2316959Gluco59Glucose level QTL 594.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)534944474113558310Rat
2312671Scl64Serum cholesterol level QTL 640.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)568984307104251008Rat
2316957Pur21Proteinuria QTL 216.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)559793528113558156Rat

Markers in Region
BF388520  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2575,916,700 - 75,916,840 (+)MAPPERmRatBN7.2
Rnor_6.0578,323,586 - 78,323,725NCBIRnor6.0
Rnor_5.0582,443,318 - 82,443,457UniSTSRnor5.0
RGSC_v3.4579,460,580 - 79,460,719UniSTSRGSC3.4
Celera574,858,340 - 74,858,479UniSTS
RH 3.4 Map11510.5UniSTS
Cytogenetic Map5q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001011976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593244 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039109469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287343 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063287350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005504385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010066352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI579135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000048904   ⟹   ENSRNOP00000045516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl575,900,317 - 75,917,417 (-)Ensembl
Rnor_6.0 Ensembl578,305,526 - 78,324,278 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082642   ⟹   ENSRNOP00000074822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl575,898,763 - 75,917,393 (-)Ensembl
Rnor_6.0 Ensembl578,305,526 - 78,324,278 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098503   ⟹   ENSRNOP00000085234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl575,898,353 - 75,917,403 (-)Ensembl
RefSeq Acc Id: NM_001011976   ⟹   NP_001011976
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,968 (-)NCBI
mRatBN7.2575,898,763 - 75,917,393 (-)NCBI
Rnor_6.0578,305,526 - 78,324,278 (-)NCBI
Rnor_5.0582,425,258 - 82,444,051 (-)NCBI
RGSC_v3.4579,442,642 - 79,461,272 (-)RGD
Celera574,840,523 - 74,859,032 (-)RGD
Sequence:
RefSeq Acc Id: XM_017593244   ⟹   XP_017448733
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,933,009 (-)NCBI
mRatBN7.2575,898,762 - 75,917,454 (-)NCBI
Rnor_6.0578,305,526 - 78,324,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593245   ⟹   XP_017448734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,933,022 (-)NCBI
mRatBN7.2575,898,762 - 75,917,461 (-)NCBI
Rnor_6.0578,305,526 - 78,320,886 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017593246   ⟹   XP_017448735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,997 (-)NCBI
mRatBN7.2575,897,074 - 75,917,461 (-)NCBI
Rnor_6.0578,305,526 - 78,324,291 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039109468   ⟹   XP_038965396
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,997 (-)NCBI
mRatBN7.2575,898,762 - 75,917,412 (-)NCBI
RefSeq Acc Id: XM_039109469   ⟹   XP_038965397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,995 (-)NCBI
mRatBN7.2575,898,762 - 75,917,404 (-)NCBI
RefSeq Acc Id: XM_063287339   ⟹   XP_063143409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,933,010 (-)NCBI
RefSeq Acc Id: XM_063287340   ⟹   XP_063143410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,981 (-)NCBI
RefSeq Acc Id: XM_063287341   ⟹   XP_063143411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,987 (-)NCBI
RefSeq Acc Id: XM_063287342   ⟹   XP_063143412
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,915,457 - 80,932,997 (-)NCBI
RefSeq Acc Id: XM_063287343   ⟹   XP_063143413
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,995 (-)NCBI
RefSeq Acc Id: XM_063287344   ⟹   XP_063143414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,989 (-)NCBI
RefSeq Acc Id: XM_063287345   ⟹   XP_063143415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,995 (-)NCBI
RefSeq Acc Id: XM_063287346   ⟹   XP_063143416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,989 (-)NCBI
RefSeq Acc Id: XM_063287347   ⟹   XP_063143417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,987 (-)NCBI
RefSeq Acc Id: XM_063287348   ⟹   XP_063143418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,915,457 - 80,932,989 (-)NCBI
RefSeq Acc Id: XM_063287349   ⟹   XP_063143419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,916,408 - 80,932,997 (-)NCBI
RefSeq Acc Id: XM_063287350   ⟹   XP_063143420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,916,408 - 80,932,995 (-)NCBI
RefSeq Acc Id: XR_005504385
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,914,338 - 80,932,989 (-)NCBI
mRatBN7.2575,898,829 - 75,917,461 (-)NCBI
RefSeq Acc Id: XR_010066352
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8580,915,457 - 80,932,989 (-)NCBI
RefSeq Acc Id: NP_001011976   ⟸   NM_001011976
- UniProtKB: A6J7U7 (UniProtKB/TrEMBL),   D4ACM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448733   ⟸   XM_017593244
- Peptide Label: isoform X1
- UniProtKB: A6J7U7 (UniProtKB/TrEMBL),   D4ACM5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017448735   ⟸   XM_017593246
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017448734   ⟸   XM_017593245
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3G8 (UniProtKB/TrEMBL),   D4ACM5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074822   ⟸   ENSRNOT00000082642
Ensembl Acc Id: ENSRNOP00000045516   ⟸   ENSRNOT00000048904
RefSeq Acc Id: XP_038965396   ⟸   XM_039109468
- Peptide Label: isoform X1
- UniProtKB: A6J7U7 (UniProtKB/TrEMBL),   D4ACM5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038965397   ⟸   XM_039109469
- Peptide Label: isoform X1
- UniProtKB: A6J7U7 (UniProtKB/TrEMBL),   D4ACM5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000085234   ⟸   ENSRNOT00000098503
RefSeq Acc Id: XP_063143409   ⟸   XM_063287339
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143415   ⟸   XM_063287345
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063143413   ⟸   XM_063287343
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063143416   ⟸   XM_063287346
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143414   ⟸   XM_063287344
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063143417   ⟸   XM_063287347
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063143411   ⟸   XM_063287341
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143410   ⟸   XM_063287340
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3G8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143412   ⟸   XM_063287342
- Peptide Label: isoform X3
- UniProtKB: I6L9G3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063143418   ⟸   XM_063287348
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063143419   ⟸   XM_063287349
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063143420   ⟸   XM_063287350
- Peptide Label: isoform X7

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACM5-F1-model_v2 AlphaFold D4ACM5 1-367 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693791
Promoter ID:EPDNEW_R4314
Type:multiple initiation site
Name:Wdr31_1
Description:WD repeat domain 31
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0578,324,300 - 78,324,360EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309367 AgrOrtholog
BioCyc Gene G2FUF-41096 BioCyc
Ensembl Genes ENSRNOG00000014869 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000048904.2 UniProtKB/TrEMBL
  ENSRNOT00000082642.2 UniProtKB/TrEMBL
  ENSRNOT00000098503.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134286 IMAGE-MGC_LOAD
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR31 UniProtKB/TrEMBL
KEGG Report rno:298096 UniProtKB/TrEMBL
MGC_CLONE MGC:94416 IMAGE-MGC_LOAD
NCBI Gene 298096 ENTREZGENE
PANTHER PTHR19869 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 31 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PhenoGen Wdr31 PhenoGen
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
RatGTEx ENSRNOG00000014869 RatGTEx
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8I6A3G8 ENTREZGENE, UniProtKB/TrEMBL
  A6J7U7 ENTREZGENE, UniProtKB/TrEMBL
  A6J7U8_RAT UniProtKB/TrEMBL
  A6J7U9_RAT UniProtKB/TrEMBL
  D4ACM5 ENTREZGENE, UniProtKB/TrEMBL
  I6L9G3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Wdr31  WD repeat domain 31  Wdr31_predicted  WD repeat domain 31 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Wdr31_predicted  WD repeat domain 31 (predicted)      Symbol and Name status set to approved 70820 APPROVED