WDR31 (WD repeat domain 31) - Rat Genome Database

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Gene: WDR31 (WD repeat domain 31) Chlorocebus sabaeus
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Symbol: WDR31
Name: WD repeat domain 31
RGD ID: 18403612
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WD repeat-containing protein 31
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,233,434 - 26,257,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,242,384 - 26,261,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,416 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
WDR31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11226,233,434 - 26,257,807 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1226,242,384 - 26,261,048 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,416 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
WDR31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389113,313,222 - 113,340,275 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9113,313,222 - 113,340,298 (-)EnsemblGRCh38hg38GRCh38
GRCh379116,075,502 - 116,102,555 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 369115,117,751 - 115,142,388 (-)NCBINCBI36Build 36hg18NCBI36
Build 349113,157,484 - 113,182,121NCBI
Celera986,725,549 - 86,750,228 (-)NCBICelera
Cytogenetic Map9q32NCBI
HuRef985,685,302 - 85,710,020 (-)NCBIHuRef
CHM1_19116,224,589 - 116,249,279 (-)NCBICHM1_1
T2T-CHM13v2.09125,512,036 - 125,539,119 (-)NCBIT2T-CHM13v2.0
Wdr31
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39462,366,890 - 62,389,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl462,366,890 - 62,389,133 (-)EnsemblGRCm39 Ensembl
GRCm38462,448,653 - 62,470,999 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl462,448,653 - 62,470,896 (-)EnsemblGRCm38mm10GRCm38
MGSCv37462,114,768 - 62,131,906 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36461,940,095 - 61,957,233 (-)NCBIMGSCv36mm8
Celera461,123,938 - 61,141,015 (-)NCBICelera
Cytogenetic Map4B3NCBI
cM Map433.14NCBI
Wdr31
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8580,914,338 - 80,933,022 (-)NCBIGRCr8
mRatBN7.2575,897,074 - 75,917,461 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl575,898,353 - 75,917,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx578,298,350 - 78,316,693 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0580,115,447 - 80,133,790 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0580,090,957 - 80,109,300 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0578,305,526 - 78,324,318 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl578,305,526 - 78,324,278 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0582,425,258 - 82,444,051 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4579,442,642 - 79,461,272 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1579,447,754 - 79,466,385 (-)NCBI
Celera574,840,523 - 74,859,032 (-)NCBICelera
Cytogenetic Map5q24NCBI
Wdr31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541914,150,293 - 14,168,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541914,150,881 - 14,168,256 (+)NCBIChiLan1.0ChiLan1.0
WDR31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21126,032,727 - 26,064,646 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1926,035,105 - 26,066,996 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0984,413,199 - 84,442,635 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19112,787,170 - 112,813,503 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9112,787,170 - 112,813,503 (-)Ensemblpanpan1.1panPan2
WDR31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11167,680,778 - 67,699,416 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1167,680,778 - 67,695,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1166,084,926 - 66,104,206 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01168,805,006 - 68,824,156 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1168,804,584 - 68,824,143 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11167,322,588 - 67,341,848 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01167,344,492 - 67,363,418 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01168,090,574 - 68,109,871 (-)NCBIUU_Cfam_GSD_1.0
Wdr31
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947182,978,352 - 182,997,614 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936559270,272 - 288,214 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936559269,005 - 288,159 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WDR31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1253,945,953 - 253,966,692 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11253,942,570 - 253,966,769 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21284,697,707 - 284,718,169 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Wdr31
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476021,764,839 - 21,780,561 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476021,760,148 - 21,781,027 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 19 35 35 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000010525   ⟹   ENSCSAP00000008618
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1226,242,384 - 26,261,048 (+)Ensembl
RefSeq Acc Id: XM_007968362   ⟹   XP_007966553
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11226,233,435 - 26,257,807 (+)NCBI
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_007968365   ⟹   XP_007966556
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11226,233,434 - 26,257,807 (+)NCBI
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,416 (-)NCBI
Sequence:
RefSeq Acc Id: XM_037983837   ⟹   XP_037839765
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,385 (-)NCBI
RefSeq Acc Id: XM_037983845   ⟹   XP_037839773
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366603516,543,556 - 16,567,416 (-)NCBI
Protein Sequences
Protein RefSeqs XP_007966553 (Get FASTA)   NCBI Sequence Viewer  
  XP_007966556 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839765 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839773 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000008618.1
RefSeq Acc Id: XP_007966556   ⟸   XM_007968365
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007966553   ⟸   XM_007968362
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RJ29 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCSAP00000008618   ⟸   ENSCSAT00000010525
RefSeq Acc Id: XP_037839773   ⟸   XM_037983845
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037839765   ⟸   XM_037983837
- Peptide Label: isoform X1
- UniProtKB: A0A0D9RJ29 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000012450 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000010525.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_CS UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
  WDR31 UniProtKB/TrEMBL
KEGG Report csab:103218991 UniProtKB/TrEMBL
NCBI Gene WDR31 ENTREZGENE
PANTHER PTHR19869 UniProtKB/TrEMBL
  WD REPEAT-CONTAINING PROTEIN 31 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_1 UniProtKB/TrEMBL
  WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A0D9RJ29 ENTREZGENE, UniProtKB/TrEMBL