Sh3tc1 (SH3 domain and tetratricopeptide repeats 1) - Rat Genome Database

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Gene: Sh3tc1 (SH3 domain and tetratricopeptide repeats 1) Rattus norvegicus
Analyze
Symbol: Sh3tc1
Name: SH3 domain and tetratricopeptide repeats 1
RGD ID: 1305610
Description: Orthologous to human SH3TC1 (SH3 domain and tetratricopeptide repeats 1); INTERACTS WITH 2,4-dinitrotoluene; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305441; SH3 domain and tetratricopeptide repeat-containing protein 1; SH3 domain and tetratricopeptide repeats-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,230,322 - 79,274,622 (+)NCBIGRCr8
mRatBN7.21475,005,691 - 75,050,001 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,016,875 - 75,049,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,462,516 - 79,491,465 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,703,380 - 80,732,327 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,148,376 - 77,177,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,184,814 - 80,229,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,195,715 - 80,229,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,814,440 - 79,857,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,654,810 - 80,683,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,657,247 - 80,694,342 (+)NCBI
Celera1473,953,051 - 73,981,437 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14574644  


Genomics

Comparative Map Data
Sh3tc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,230,322 - 79,274,622 (+)NCBIGRCr8
mRatBN7.21475,005,691 - 75,050,001 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,016,875 - 75,049,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,462,516 - 79,491,465 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,703,380 - 80,732,327 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,148,376 - 77,177,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,184,814 - 80,229,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,195,715 - 80,229,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,814,440 - 79,857,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,654,810 - 80,683,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,657,247 - 80,694,342 (+)NCBI
Celera1473,953,051 - 73,981,437 (+)NCBICelera
Cytogenetic Map14q21NCBI
SH3TC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3848,182,072 - 8,241,103 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl48,182,072 - 8,241,803 (+)EnsemblGRCh38hg38GRCh38
GRCh3748,183,799 - 8,242,830 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,251,960 - 8,293,730 (+)NCBINCBI36Build 36hg18NCBI36
Build 3448,319,164 - 8,360,899NCBI
Celera48,092,937 - 8,134,682 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef48,120,444 - 8,162,527 (+)NCBIHuRef
CHM1_148,199,007 - 8,240,738 (+)NCBICHM1_1
T2T-CHM13v2.048,160,457 - 8,219,878 (+)NCBIT2T-CHM13v2.0
Sh3tc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,854,524 - 35,897,331 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,854,524 - 35,897,331 (-)EnsemblGRCm39 Ensembl
GRCm38535,697,180 - 35,739,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,697,180 - 35,739,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv37536,039,829 - 36,071,925 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36536,014,042 - 36,040,807 (-)NCBIMGSCv36mm8
Celera533,170,663 - 33,202,766 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map518.6NCBI
Sh3tc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,752,058 - 2,779,401 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,752,499 - 2,786,067 (-)NCBIChiLan1.0ChiLan1.0
SH3TC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,484,789 - 8,527,166 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan148,412,165 - 8,454,341 (+)NCBINHGRI_mPanPan1
PanPan1.148,248,080 - 8,306,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,264,912 - 8,306,283 (+)Ensemblpanpan1.1panPan2
SH3TC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1359,999,350 - 60,051,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl360,013,234 - 60,046,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,647,706 - 62,696,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,471,846 - 60,520,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,471,121 - 60,519,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1359,981,882 - 60,015,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,170,617 - 60,219,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,528,604 - 60,577,406 (+)NCBIUU_Cfam_GSD_1.0
Sh3tc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,886,288 - 65,918,842 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,598,573 - 19,620,425 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647719,577,481 - 19,620,534 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3TC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,846,005 - 2,883,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.182,846,004 - 2,884,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,324,680 - 4,354,205 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SH3TC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12744,148,258 - 44,178,371 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2744,159,155 - 44,179,342 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666051470,147 - 514,898 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3tc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,914,391 - 23,936,823 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475523,903,709 - 23,936,896 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sh3tc1
242 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:39
Count of miRNA genes:34
Interacting mature miRNAs:39
Transcripts:ENSRNOT00000010784
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
BQ210040  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21475,034,523 - 75,034,697 (+)MAPPERmRatBN7.2
Rnor_6.01480,213,711 - 80,213,884NCBIRnor6.0
Rnor_5.01479,842,591 - 79,842,764UniSTSRnor5.0
RGSC_v3.41480,668,607 - 80,668,780UniSTSRGSC3.4
Celera1473,966,317 - 73,966,490UniSTS
RH 3.4 Map14452.07UniSTS
Cytogenetic Map14q21UniSTS
UniSTS:235167  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21475,049,854 - 75,049,975 (+)MAPPERmRatBN7.2
Rnor_6.01480,229,061 - 80,229,181NCBIRnor6.0
Rnor_5.01479,857,352 - 79,857,472UniSTSRnor5.0
RGSC_v3.41480,683,550 - 80,683,670UniSTSRGSC3.4
Celera1473,981,297 - 73,981,417UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001107226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091962 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000010784   ⟹   ENSRNOP00000010784
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1475,021,048 - 75,049,995 (+)Ensembl
Rnor_6.0 Ensembl1480,195,715 - 80,229,214 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117836   ⟹   ENSRNOP00000078567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1475,016,875 - 75,049,995 (+)Ensembl
RefSeq Acc Id: NM_001107226   ⟹   NP_001100696
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,245,678 - 79,274,621 (+)NCBI
mRatBN7.21475,021,048 - 75,049,995 (+)NCBI
Rnor_6.01480,200,174 - 80,229,201 (+)NCBI
Rnor_5.01479,814,440 - 79,857,498 (+)NCBI
RGSC_v3.41480,654,810 - 80,683,690 (+)RGD
Celera1473,953,051 - 73,981,437 (+)RGD
Sequence:
RefSeq Acc Id: XM_006251125   ⟹   XP_006251187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,241,320 - 79,274,622 (+)NCBI
mRatBN7.21475,016,612 - 75,050,001 (+)NCBI
Rnor_6.01480,195,656 - 80,229,207 (+)NCBI
Rnor_5.01479,814,440 - 79,857,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251126   ⟹   XP_006251188
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,230,332 - 79,274,622 (+)NCBI
mRatBN7.21475,005,724 - 75,050,001 (+)NCBI
Rnor_6.01480,184,814 - 80,229,207 (+)NCBI
Rnor_5.01479,814,440 - 79,857,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251127   ⟹   XP_006251189
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,230,322 - 79,274,622 (+)NCBI
mRatBN7.21475,005,691 - 75,050,001 (+)NCBI
Rnor_6.01480,184,814 - 80,229,207 (+)NCBI
Rnor_5.01479,814,440 - 79,857,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251128   ⟹   XP_006251190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,240,636 - 79,274,622 (+)NCBI
mRatBN7.21475,016,001 - 75,050,001 (+)NCBI
Rnor_6.01480,193,498 - 80,229,207 (+)NCBI
Rnor_5.01479,814,440 - 79,857,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006251130   ⟹   XP_006251192
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,241,318 - 79,274,622 (+)NCBI
mRatBN7.21475,016,613 - 75,050,001 (+)NCBI
Rnor_6.01480,195,656 - 80,229,207 (+)NCBI
Rnor_5.01479,814,440 - 79,857,498 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091959   ⟹   XP_038947887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,241,321 - 79,274,622 (+)NCBI
mRatBN7.21475,016,613 - 75,050,001 (+)NCBI
RefSeq Acc Id: XM_039091961   ⟹   XP_038947889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,241,240 - 79,269,548 (+)NCBI
mRatBN7.21475,016,597 - 75,044,919 (+)NCBI
RefSeq Acc Id: XM_039091962   ⟹   XP_038947890
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,254,113 - 79,274,622 (+)NCBI
mRatBN7.21475,029,483 - 75,050,001 (+)NCBI
RefSeq Acc Id: XM_063273148   ⟹   XP_063129218
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,230,345 - 79,274,622 (+)NCBI
RefSeq Acc Id: XM_063273149   ⟹   XP_063129219
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,230,389 - 79,274,622 (+)NCBI
RefSeq Acc Id: XM_063273150   ⟹   XP_063129220
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81479,230,388 - 79,274,622 (+)NCBI
RefSeq Acc Id: NP_001100696   ⟸   NM_001107226
- UniProtKB: D3ZLQ9 (UniProtKB/TrEMBL),   A6IJZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251188   ⟸   XM_006251126
- Peptide Label: isoform X1
- UniProtKB: D3ZLQ9 (UniProtKB/TrEMBL),   A6IJZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251189   ⟸   XM_006251127
- Peptide Label: isoform X1
- UniProtKB: D3ZLQ9 (UniProtKB/TrEMBL),   A6IJZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251190   ⟸   XM_006251128
- Peptide Label: isoform X1
- UniProtKB: D3ZLQ9 (UniProtKB/TrEMBL),   A6IJZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251187   ⟸   XM_006251125
- Peptide Label: isoform X1
- UniProtKB: D3ZLQ9 (UniProtKB/TrEMBL),   A6IJZ0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251192   ⟸   XM_006251130
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZL28 (UniProtKB/TrEMBL),   D3ZLQ9 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000010784   ⟸   ENSRNOT00000010784
RefSeq Acc Id: XP_038947889   ⟸   XM_039091961
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038947887   ⟸   XM_039091959
- Peptide Label: isoform X3
- UniProtKB: D3ZLQ9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038947890   ⟸   XM_039091962
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000078567   ⟸   ENSRNOT00000117836
RefSeq Acc Id: XP_063129218   ⟸   XM_063273148
- Peptide Label: isoform X1
- UniProtKB: A6IJZ0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129220   ⟸   XM_063273150
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZL28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129219   ⟸   XM_063273149
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZL28 (UniProtKB/TrEMBL)
Protein Domains
SH3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZLQ9-F1-model_v2 AlphaFold D3ZLQ9 1-1345 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305610 AgrOrtholog
BioCyc Gene G2FUF-15328 BioCyc
Ensembl Genes ENSRNOG00000007993 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010784.7 UniProtKB/TrEMBL
  ENSRNOT00000117836.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro SH3-like_dom UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SH3TC1/SH3TC2 UniProtKB/TrEMBL
  TPR-like_helical UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report rno:305441 UniProtKB/TrEMBL
NCBI Gene 305441 ENTREZGENE
PANTHER PTHR22647 UniProtKB/TrEMBL
  SH3 DOMAIN AND TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
  TPR_8 UniProtKB/TrEMBL
PhenoGen Sh3tc1 PhenoGen
PROSITE SH3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007993 RatGTEx
SMART SH3 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP HCP-like UniProtKB/TrEMBL
  SH3 UniProtKB/TrEMBL
  SSF48452 UniProtKB/TrEMBL
UniProt A0A8I5ZL28 ENTREZGENE, UniProtKB/TrEMBL
  A6IJZ0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZLQ9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Sh3tc1  SH3 domain and tetratricopeptide repeats 1   Sh3tc1_predicted  SH3 domain and tetratricopeptide repeats 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Sh3tc1_predicted  SH3 domain and tetratricopeptide repeats 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED