SH3TC1 (SH3 domain and tetratricopeptide repeats 1) - Rat Genome Database

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Gene: SH3TC1 (SH3 domain and tetratricopeptide repeats 1) Canis lupus familiaris
Analyze
Symbol: SH3TC1
Name: SH3 domain and tetratricopeptide repeats 1
RGD ID: 12075198
Description: ASSOCIATED WITH Colorectal Neoplasms (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SH3 domain and tetratricopeptide repeat-containing protein 1; SH3 domain and tetratricopeptide repeats-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1359,999,350 - 60,051,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl360,013,234 - 60,046,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,647,706 - 62,696,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,471,846 - 60,520,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,471,121 - 60,519,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1359,981,882 - 60,015,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,170,617 - 60,219,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,528,604 - 60,577,406 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
SH3TC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1359,999,350 - 60,051,144 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl360,013,234 - 60,046,757 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha362,647,706 - 62,696,475 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0360,471,846 - 60,520,658 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl360,471,121 - 60,519,745 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1359,981,882 - 60,015,569 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0360,170,617 - 60,219,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0360,528,604 - 60,577,406 (+)NCBIUU_Cfam_GSD_1.0
SH3TC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3848,182,072 - 8,241,103 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl48,182,072 - 8,241,803 (+)EnsemblGRCh38hg38GRCh38
GRCh3748,183,799 - 8,242,830 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,251,960 - 8,293,730 (+)NCBINCBI36Build 36hg18NCBI36
Build 3448,319,164 - 8,360,899NCBI
Celera48,092,937 - 8,134,682 (+)NCBICelera
Cytogenetic Map4p16.1NCBI
HuRef48,120,444 - 8,162,527 (+)NCBIHuRef
CHM1_148,199,007 - 8,240,738 (+)NCBICHM1_1
T2T-CHM13v2.048,160,457 - 8,219,878 (+)NCBIT2T-CHM13v2.0
Sh3tc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,854,524 - 35,897,331 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,854,524 - 35,897,331 (-)EnsemblGRCm39 Ensembl
GRCm38535,697,180 - 35,739,987 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,697,180 - 35,739,987 (-)EnsemblGRCm38mm10GRCm38
MGSCv37536,039,829 - 36,071,925 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36536,014,042 - 36,040,807 (-)NCBIMGSCv36mm8
Celera533,170,663 - 33,202,766 (-)NCBICelera
Cytogenetic Map5B3NCBI
cM Map518.6NCBI
Sh3tc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81479,230,322 - 79,274,622 (+)NCBIGRCr8
mRatBN7.21475,005,691 - 75,050,001 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,016,875 - 75,049,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1479,462,516 - 79,491,465 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01480,703,380 - 80,732,327 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,148,376 - 77,177,317 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01480,184,814 - 80,229,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,195,715 - 80,229,214 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,814,440 - 79,857,498 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,654,810 - 80,683,690 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11480,657,247 - 80,694,342 (+)NCBI
Celera1473,953,051 - 73,981,437 (+)NCBICelera
Cytogenetic Map14q21NCBI
Sh3tc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,752,058 - 2,779,401 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,752,499 - 2,786,067 (-)NCBIChiLan1.0ChiLan1.0
SH3TC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v238,484,789 - 8,527,166 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan148,412,165 - 8,454,341 (+)NCBINHGRI_mPanPan1
PanPan1.148,248,080 - 8,306,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,264,912 - 8,306,283 (+)Ensemblpanpan1.1panPan2
Sh3tc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528565,886,288 - 65,918,842 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647719,598,573 - 19,620,425 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647719,577,481 - 19,620,534 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3TC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,846,005 - 2,883,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.182,846,004 - 2,884,174 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,324,680 - 4,354,205 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SH3TC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12744,148,258 - 44,178,371 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2744,159,155 - 44,179,342 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666051470,147 - 514,898 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sh3tc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475523,914,391 - 23,936,823 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475523,903,709 - 23,936,896 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SH3TC1
1138 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005618482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005618483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005618484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005618487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022417107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472198 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038477802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661667 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000023093   ⟹   ENSCAFP00000021443
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl360,013,234 - 60,046,757 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000080858   ⟹   ENSCAFP00000065412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl360,013,234 - 60,046,757 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845017504   ⟹   ENSCAFP00845013623
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl360,471,121 - 60,519,745 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845017592   ⟹   ENSCAFP00845013696
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl360,484,854 - 60,519,745 (+)Ensembl
RefSeq Acc Id: XM_005618482   ⟹   XP_005618539
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,355 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,647,706 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005618483   ⟹   XP_005618540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,355 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,647,737 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005618484   ⟹   XP_005618541
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1360,013,663 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,662,019 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005618487   ⟹   XP_005618544
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,351 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,647,722 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014112532   ⟹   XP_013968007
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,354 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,647,737 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417105   ⟹   XP_022272813
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,355 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,647,737 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417106   ⟹   XP_022272814
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1360,013,621 - 60,051,144 (+)NCBI
Dog10K_Boxer_Tasha362,661,776 - 62,696,475 (+)NCBI
Sequence:
RefSeq Acc Id: XM_022417107   ⟹   XP_022272815
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,350 - 60,039,365 (+)NCBI
Dog10K_Boxer_Tasha362,647,737 - 62,688,201 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038472198   ⟹   XP_038328126
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1359,981,882 - 60,015,569 (+)NCBI
RefSeq Acc Id: XM_038477802   ⟹   XP_038333730
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha362,664,392 - 62,696,475 (+)NCBI
RefSeq Acc Id: XM_038533150   ⟹   XP_038389078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,528,635 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533151   ⟹   XP_038389079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,542,906 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533152   ⟹   XP_038389080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,528,604 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533153   ⟹   XP_038389081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,545,283 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533154   ⟹   XP_038389082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,528,635 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533155   ⟹   XP_038389083
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,528,635 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533156   ⟹   XP_038389084
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,528,620 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533157   ⟹   XP_038389085
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,542,663 - 60,577,406 (+)NCBI
RefSeq Acc Id: XM_038533158   ⟹   XP_038389086
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0360,528,635 - 60,569,137 (+)NCBI
RefSeq Acc Id: XM_038597479   ⟹   XP_038453407
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,170,648 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597480   ⟹   XP_038453408
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,184,919 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597481   ⟹   XP_038453409
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,170,617 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597482   ⟹   XP_038453410
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,187,285 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597483   ⟹   XP_038453411
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,170,648 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597484   ⟹   XP_038453412
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,170,648 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597485   ⟹   XP_038453413
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,170,633 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597486   ⟹   XP_038453414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,184,676 - 60,219,433 (+)NCBI
RefSeq Acc Id: XM_038597487   ⟹   XP_038453415
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0360,170,648 - 60,211,129 (+)NCBI
RefSeq Acc Id: XM_038661661   ⟹   XP_038517589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,471,877 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661662   ⟹   XP_038517590
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,486,148 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661663   ⟹   XP_038517591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,471,846 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661664   ⟹   XP_038517592
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,488,523 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661665   ⟹   XP_038517593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,471,877 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661667   ⟹   XP_038517595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,471,877 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661668   ⟹   XP_038517596
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,471,862 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661669   ⟹   XP_038517597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,485,905 - 60,520,658 (+)NCBI
RefSeq Acc Id: XM_038661670   ⟹   XP_038517598
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0360,471,877 - 60,512,351 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005618539 (Get FASTA)   NCBI Sequence Viewer  
  XP_005618540 (Get FASTA)   NCBI Sequence Viewer  
  XP_005618541 (Get FASTA)   NCBI Sequence Viewer  
  XP_005618544 (Get FASTA)   NCBI Sequence Viewer  
  XP_013968007 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272813 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272814 (Get FASTA)   NCBI Sequence Viewer  
  XP_022272815 (Get FASTA)   NCBI Sequence Viewer  
  XP_038328126 (Get FASTA)   NCBI Sequence Viewer  
  XP_038333730 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389078 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389079 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389080 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389081 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389082 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389083 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389084 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389085 (Get FASTA)   NCBI Sequence Viewer  
  XP_038389086 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453407 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453408 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453409 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453410 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453411 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453412 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453413 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453414 (Get FASTA)   NCBI Sequence Viewer  
  XP_038453415 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517595 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517596 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517597 (Get FASTA)   NCBI Sequence Viewer  
  XP_038517598 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000021443.4
  ENSCAFP00000065412.1
  ENSCAFP00040004751.1
  ENSCAFP00845013623
  ENSCAFP00845013623.1
  ENSCAFP00845013696
  ENSCAFP00845013696.1
RefSeq Acc Id: XP_005618540   ⟸   XM_005618483
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013968007   ⟸   XM_014112532
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005618539   ⟸   XM_005618482
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005618544   ⟸   XM_005618487
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005618541   ⟸   XM_005618484
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272815   ⟸   XM_022417107
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_022272813   ⟸   XM_022417105
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022272814   ⟸   XM_022417106
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000021443   ⟸   ENSCAFT00000023093
Ensembl Acc Id: ENSCAFP00000065412   ⟸   ENSCAFT00000080858
RefSeq Acc Id: XP_038328126   ⟸   XM_038472198
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453409   ⟸   XM_038597481
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453413   ⟸   XM_038597485
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038453407   ⟸   XM_038597479
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453411   ⟸   XM_038597483
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038453412   ⟸   XM_038597484
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038453415   ⟸   XM_038597487
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038453414   ⟸   XM_038597486
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038453408   ⟸   XM_038597480
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453410   ⟸   XM_038597482
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038517591   ⟸   XM_038661663
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517596   ⟸   XM_038661668
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517589   ⟸   XM_038661661
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517593   ⟸   XM_038661665
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517595   ⟸   XM_038661667
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517598   ⟸   XM_038661670
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038517597   ⟸   XM_038661669
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517590   ⟸   XM_038661662
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517592   ⟸   XM_038661664
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038333730   ⟸   XM_038477802
- Peptide Label: isoform X1
- UniProtKB: A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL),   A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389080   ⟸   XM_038533152
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL),   A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389084   ⟸   XM_038533156
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389078   ⟸   XM_038533150
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL),   A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389082   ⟸   XM_038533154
- Peptide Label: isoform X2
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389083   ⟸   XM_038533155
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389086   ⟸   XM_038533158
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038389085   ⟸   XM_038533157
- Peptide Label: isoform X3
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389079   ⟸   XM_038533151
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL),   A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389081   ⟸   XM_038533153
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PWB8 (UniProtKB/TrEMBL),   A0A8I3ND61 (UniProtKB/TrEMBL),   A0A8P0NG66 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845013696   ⟸   ENSCAFT00845017592
Ensembl Acc Id: ENSCAFP00845013623   ⟸   ENSCAFT00845017504
Protein Domains
SH3

Promoters
RGD ID:13682793
Promoter ID:EPDNEW_C860
Type:multiple initiation site
Name:SH3TC1_1
Description:SH3 domain and tetratricopeptide repeats 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1359,999,399 - 59,999,459EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014543 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040002915 UniProtKB/TrEMBL
  ENSCAFG00845009957 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023093.6 UniProtKB/TrEMBL
  ENSCAFT00000080858.2 UniProtKB/TrEMBL
  ENSCAFT00040005527.1 UniProtKB/TrEMBL
  ENSCAFT00845017504 ENTREZGENE
  ENSCAFT00845017504.1 UniProtKB/TrEMBL
  ENSCAFT00845017592 ENTREZGENE
  ENSCAFT00845017592.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
  SH3TC1/SH3TC2 UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
KEGG Report cfa:488788 UniProtKB/TrEMBL
NCBI Gene SH3TC1 ENTREZGENE
PANTHER PTHR22647 UniProtKB/TrEMBL
  SH3 DOMAIN AND TETRATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam SH3_1 UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
  TPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
  SSF50044 UniProtKB/TrEMBL
UniProt A0A8C0PWB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3ND61 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NFP4_CANLF UniProtKB/TrEMBL
  A0A8P0NG66 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PDZ6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:46135 ENTREZGENE