C1qtnf1 (C1q and TNF related 1) - Rat Genome Database

Name: C1qtnf1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: C1qtnf1 (C1q and TNF related 1) Rattus norvegicus

Analyze

Symbol:

C1qtnf1

Name:

C1q and TNF related 1

RGD ID:

1359204

Description:

Predicted to enable collagen binding activity and identical protein binding activity. Predicted to be involved in several processes, including negative regulation of platelet aggregation; positive regulation of aldosterone secretion; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within positive regulation of MAPK cascade; positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction; and regulation of glucose metabolic process. Predicted to be located in plasma membrane. Predicted to be part of collagen trimer. Predicted to be active in extracellular space. Orthologous to human C1QTNF1 (C1q and TNF related 1); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

C1q and tumor necrosis factor related protein 1; complement C1q tumor necrosis factor-related protein 1; Ctrp1; MGC94614

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	C1QTNF1 (C1q and TNF related 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, PhylomeDB, Treefam
Mus musculus (house mouse):	C1qtnf1 (C1q and tumor necrosis factor related protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	C1QTNF1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	C1qtnf1 (C1q and TNF related 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	C1QTNF1 (C1q and TNF related 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	C1qtnf1 (C1q and tumor necrosis factor related protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	c1qtnf1 (C1q and TNF related 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c1qtnf1	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	104,159,021 - 104,180,253 (+)	NCBI		GRCr8
mRatBN7.2	10	103,660,319 - 103,681,662 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	103,660,327 - 103,681,660 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	108,761,558 - 108,781,641 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	108,224,596 - 108,244,679 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	103,581,120 - 103,601,234 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	107,455,845 - 107,477,160 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	107,455,845 - 107,477,162 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	108,446,487 - 108,466,600 (+)	NCBI
Celera	10	102,220,917 - 102,241,022 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pityriasis rubra pilaris (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (EXP)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

alpha-Zearalanol (EXP)

amitrole (EXP)

atrazine (EXP)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

cefaloridine (EXP)

clotrimazole (EXP)

cobalt dichloride (EXP)

cocaine (EXP)

cyclosporin A (ISO)

dexamethasone (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

gentamycin (EXP)

graphite (EXP)

indometacin (ISO)

lipopolysaccharide (ISO)

methimazole (EXP)

monosodium L-glutamate (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

paracetamol (EXP)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (EXP)

permethrin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

sunitinib (ISO)

thioacetamide (EXP)

topotecan (EXP)

triptonide (ISO)

valdecoxib (EXP)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of platelet activation (ISO)

negative regulation of platelet aggregation (IEA,ISO)

positive regulation of aldosterone secretion (IEA,ISO)

positive regulation of cytosolic calcium ion concentration (IEA,ISO)

positive regulation of gene expression (IEA,ISO)

positive regulation of MAPK cascade (IEA,ISO)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA,ISO)

regulation of glucose metabolic process (IEA,ISO)

Cellular Component

collagen trimer (IEA)

extracellular space (IBA,IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

collagen binding (IEA,ISO)

identical protein binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
7.	A family of Acrp30/adiponectin structural and functional paralogs.	Wong GW, etal., Proc Natl Acad Sci U S A 2004 Jul 13;101(28):10302-7. Epub 2004 Jul 1.

Additional References at PubMed

PMID:12409230	PMID:16195328	PMID:16806199	PMID:18171693	PMID:18783346

Genomics

Comparative Map Data

C1qtnf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	104,159,021 - 104,180,253 (+)	NCBI		GRCr8
mRatBN7.2	10	103,660,319 - 103,681,662 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	103,660,327 - 103,681,660 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	108,761,558 - 108,781,641 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	108,224,596 - 108,244,679 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	103,581,120 - 103,601,234 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	107,455,845 - 107,477,160 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	107,455,845 - 107,477,162 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	108,446,487 - 108,466,600 (+)	NCBI
Celera	10	102,220,917 - 102,241,022 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

C1QTNF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	79,022,934 - 79,049,788 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	79,022,814 - 79,049,788 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	77,019,016 - 77,045,870 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	74,531,846 - 74,557,465 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	74,531,845 - 74,557,464	NCBI
Celera	17	73,618,468 - 73,644,096 (+)	NCBI		Celera
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	72,441,799 - 72,468,640 (+)	NCBI		HuRef
CHM1_1	17	77,082,932 - 77,109,786 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	79,917,861 - 79,944,721 (+)	NCBI		T2T-CHM13v2.0

C1qtnf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	118,319,187 - 118,342,608 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	118,319,029 - 118,340,789 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	118,428,457 - 118,451,782 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	118,428,203 - 118,449,963 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	118,295,167 - 118,311,277 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	118,249,943 - 118,266,053 (+)	NCBI		MGSCv36	mm8
Celera	11	130,179,331 - 130,195,511 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	83.17	NCBI

C1qtnf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	3,679,704 - 3,699,503 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	3,680,352 - 3,700,729 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1QTNF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	95,073,191 - 95,098,826 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	99,903,376 - 99,928,875 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	73,099,560 - 73,126,304 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	78,643,266 - 78,669,386 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	78,644,531 - 78,669,386 (+)	Ensembl	panpan1.1		panPan2

C1QTNF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	2,401,369 - 2,405,595 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	2,402,945 - 2,404,053 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	3,057,639 - 3,079,084 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	3,051,068 - 3,072,567 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	3,051,071 - 3,172,095 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	3,073,500 - 3,094,974 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	3,199,280 - 3,220,753 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	3,280,188 - 3,301,647 (-)	NCBI		UU_Cfam_GSD_1.0

C1qtnf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	3,053,822 - 3,073,040 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936594	3,338,774 - 3,358,985 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936594	3,338,863 - 3,358,137 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1QTNF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	3,161,360 - 3,170,076 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	3,161,355 - 3,181,470 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C1QTNF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	70,993,035 - 71,018,240 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	70,992,936 - 71,018,327 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	42,238,361 - 42,280,027 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

C1qtnf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	8,349,713 - 8,368,421 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624801	8,349,894 - 8,368,168 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in C1qtnf1
94 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	536
Count of miRNA genes:	239
Interacting mature miRNAs:	303
Transcripts:	ENSRNOT00000004373
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303118	Mamtr7	Mammary tumor resistance QTL 7		0.003	mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	10	9658275	104670812	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14487011	104060283	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14487011	107057807	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23444813	104060283	Rat
1331791	Cm31	Cardiac mass QTL 31	3.84606		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	10	29299504	107211142	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40035094	104060283	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42045676	104670812	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	51770177	107211142	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	51770177	107211142	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	53797385	107211142	Rat
2293698	Bss43	Bone structure and strength QTL 43	5.33	0.0001	lumbar vertebra size trait (VT:0010518)	lumbar vertebra cross-sectional area (CMO:0001689)	10	59209888	104209888	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62057807	107057807	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62057807	107057807	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63221094	107211142	Rat
2317029	Aia19	Adjuvant induced arthritis QTL 19	2.98		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	10	66978955	107211142	Rat
2317039	Aia6	Adjuvant induced arthritis QTL 6	4.31		joint integrity trait (VT:0010548)	right rear ankle joint diameter (CMO:0002150)	10	66978955	107211142	Rat
10450498	Bp384	Blood pressure QTL 384		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	67750049	107211142	Rat
1642980	Bp300	Blood pressure QTL 300			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68383129	107211142	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68420376	107211142	Rat
2300172	Bmd57	Bone mineral density QTL 57	9.8	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	10	69738412	107211142	Rat
2293646	Bss25	Bone structure and strength QTL 25	10.96	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	10	69738412	107211142	Rat
2293663	Bss33	Bone structure and strength QTL 33	9.34	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	10	69738412	107211142	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70199100	107211142	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72224939	107211142	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	72224939	107211142	Rat
2292438	Bp311	Blood pressure QTL 311			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	76246085	107211142	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76452683	107211142	Rat
4889492	Pancm2	Pancreatic morphology QTL 2	3.2		pancreatic beta cell morphology trait (VT:0005217)	ratio of insulin-positive cell area to total area of splenic region of pancreas (CMO:0001814)	10	76748906	107211142	Rat
2303589	Bw87	Body weight QTL 87	2		body mass (VT:0001259)	body weight (CMO:0000012)	10	81285008	107211142	Rat
2317754	Glom25	Glomerulus QTL 25	3.5		urine protein amount (VT:0005160)	urine protein level (CMO:0000591)	10	82685200	107211142	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	85565469	103884409	Rat
631538	Oia5	Oil induced arthritis QTL 5			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87055121	107211142	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87307617	107211142	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	88539139	107211142	Rat
12880395	Cm109	Cardiac mass QTL 109		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	90404397	107211142	Rat
12880396	Am13	Aortic mass QTL 13		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	90404397	107211142	Rat
12880398	Kidm67	Kidney mass QTL 67		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	90404397	107211142	Rat
12880384	Cm107	Cardiac mass QTL 107		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)		90404397	107211142	Rat
12880385	Cm108	Cardiac mass QTL 108		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)		90404397	107211142	Rat
1579915	Bp280	Blood pressure QTL 280		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90404397	107211142	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	90627439	107057807	Rat
724530	Bp149	Blood pressure QTL 149		0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	90627439	107211142	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91228102	104060283	Rat
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93223816	107057807	Rat
10450493	Bp382	Blood pressure QTL 382		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
2292436	Bp310	Blood pressure QTL 310			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	94759759	107211142	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96120911	104060283	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96120911	104060283	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	96703043	107057807	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	96703043	107057807	Rat
631539	Oia6	Oil induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	97010147	104670812	Rat

Markers in Region

RH129049

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	10	103,681,377 - 103,681,557 (+)	MAPPER	mRatBN7.2
Rnor_6.0	10	107,476,876 - 107,477,055	NCBI	Rnor6.0
Rnor_5.0	10	107,111,874 - 107,112,053	UniSTS	Rnor5.0
RGSC_v3.4	10	108,452,932 - 108,453,111	UniSTS	RGSC3.4
Celera	10	102,241,855 - 102,242,034	UniSTS
Cytogenetic Map	10	q32.3	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		14	12	4	11	4					24	11
Low	3	29	45	37	8	37	8	11	74	35	17		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001007675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006247802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269243	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063269244	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC083720	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209955	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000004373 ⟹ ENSRNOP00000004373

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	10	107,455,845 - 107,476,036 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000087404 ⟹ ENSRNOP00000070390

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	103,660,327 - 103,681,660 (+)	Ensembl
Rnor_6.0 Ensembl	10	107,469,377 - 107,477,162 (+)	Ensembl

RefSeq Acc Id:

NM_001007675 ⟹ NP_001007676

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,159,021 - 104,179,136 (+)	NCBI
mRatBN7.2	10	103,660,428 - 103,680,545 (+)	NCBI
Rnor_6.0	10	107,455,845 - 107,476,043 (+)	NCBI
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	RGD
Celera	10	102,220,917 - 102,241,022 (+)	RGD

Sequence:

show sequence

GGAGGCAGCTGAGGAGATAAAGGTGTTGGGACTGCTGTGGCTTGCACTTCCCACACCCTTTCCT
CCCCCTAAAGCCCCCCCCCGGGGGGGGGACTTTTTTCTCCCTAGGGCTTTCTCTCTCAGCTTTG
ACACGTCTGTGCTTCCCCTCTGACCTAGCCTAGAAAAAGGCTCAGCCCCTGGGAGATGCTTTAA
GAGACCACTTCTCGAGAGCCCTGAGAGGCGGGAGGATTCGATTGGCACAGCCGGCTCAGCTGGA
AGGAGGAAGATGGGCTCCCGTGGACAGGGATTCATGCTGGGATGCTGCCTGCTGCTGGCTGTCA
CCTGGGGCCCGGTCCTGAGCCTTGTGCCACGAGTTCAGGAGGAACAACAGGAGTGGGAAGAGAC
AGAGGAGCTGACATCTCCCCTGGATCATGTGACAAGGCCTGAAGAAACACACAAGAGGTATAGC
CCTAGCCTGCGTGAGGGCCTCCCCACTTCCCGGTGCTATCGATGCTGTGATTCCAACCCTCCAG
TATACCAGACAATCCCTCCGCCCCAGATCAACATCACCATCCTAAAAGGTGAGAAAGGAGACCG
AGGGGATCGAGGCCTGCAGGGGAAGTATGGCAAAATAGGTTCTACGGGTCCCAGGGGCCACATT
GGCCCCAAAGGGCAGAAGGGATCTATGGGAGCCCCTGGGGACCACTGCAAGAGCCAGTACGCAG
CCTTCTCTGTGGGCCGAAAGAAGGCTCTGCACAGTAACGACTACTTCCAGCCTGTGGTCTTCGA
CACGGAGTTTGTGAACCTCTACAATCACTTCAACATGTTCACCGGGAAGTTCTACTGCTACGTG
CCCGGCATCTACTTCTTCAGCCTCAACGTGCACACGTGGAACCAGAAGGAGACCTACCTGCACA
TCATGAAGAACGAGGAGGAGGTCGTGATCCTGTATGCGCAGGTGAGCGACCGCAGCATCATGCA
GAGTCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGATGAGGTATGGGTGCGCCTCTTCAAGGGC
GAGCGTGAGAACGCCATCTTCAGTGACGAGTTCGACACCTACATCACCTTCAGCGGCTACCTGG
TCAAGCCGGCCTCCGAGCCCTAGCGGACACCCCTTGGAGCTTCCACGGACTTCTGACCTCCTTG
CCTGTCACCTGGCTTATCCCTGCATTCTACGGACACTGGAGTCCTGCCCCAGGCTGACCCCGTT
ACCTCTCTCCTCCATCCCGGCTTCCTTGGCCTTGACTTCCTCAGTTTTGGTTTTTGACAAGATG
CCCTTGGCCACCGGGAAGCCCAAAGGTCCCGGATCTGGCTGCCGATGGATGAGATCATTGGGCG
GGGAGACTGTGTGGACATTGGGGGACCTCCAGCTTCTCCTGTGTACACAGCCTTAGACGACCCT
GTGCTGTGTTGTCCTGTGGCCACAGGGTGTTCCAGAGCACAGCCCCTGTGTGTTTTCATTCCTG
GACGCAAGTAAGCAAAGGTCGTGGGTTTCTTAGGGACGAAGTAAAGCAGAAAAGAGAAAGAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006247800 ⟹ XP_006247862

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,173,374 - 104,180,253 (+)	NCBI
mRatBN7.2	10	103,674,774 - 103,681,662 (+)	NCBI
Rnor_6.0	10	107,470,271 - 107,477,160 (+)	NCBI
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI

Sequence:

show sequence

AGGTGGCATGCAGAGCACTATCAGCAGACCCTTGGCAGCACTGGGGTGTGTTGAAAACACAGAG
CCCGGAGGCCCTGGTCTGGTCAGCCGAACGAGAAGCCGAAGCTTAAGAGGAATCCTAGATGTGA
GAAGCCAAAGGCTGGACCATAGACTGAGGAAGATGGGCTCCCGTGGACAGGGATTCATGCTGGG
ATGCTGCCTGCTGCTGGCTGTCACCTGGGGCCCGGTCCTGAGCCTTGTGCCACGAGTTCAGGAG
GAACAACAGGAGTGGGAAGAGACAGAGGAGCTGACATCTCCCCTGGATCATGTGACAAGGCCTG
AAGAAACACACAAGAGGTATAGCCCTAGCCTGCGTGAGGGCCTCCCCACTTCCCGGTGCTATCG
ATGCTGTGATTCCAACCCTCCAGTATACCAGACAATCCCTCCGCCCCAGATCAACATCACCATC
CTAAAAGGTGAGAAAGGAGACCGAGGGGATCGAGGCCTGCAGGGGAAGTATGGCAAAATAGGTT
CTACGGGTCCCAGGGGCCACATTGGCCCCAAAGGGCAGAAGGGATCTATGGGAGCCCCTGGGGA
CCACTGCAAGAGCCAGTACGCAGCCTTCTCTGTGGGCCGAAAGAAGGCTCTGCACAGTAACGAC
TACTTCCAGCCTGTGGTCTTCGACACGGAGTTTGTGAACCTCTACAATCACTTCAACATGTTCA
CCGGGAAGTTCTACTGCTACGTGCCCGGCATCTACTTCTTCAGCCTCAACGTGCACACGTGGAA
CCAGAAGGAGACCTACCTGCACATCATGAAGAACGAGGAGGAGGTCGTGATCCTGTATGCGCAG
GTGAGCGACCGCAGCATCATGCAGAGTCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGATGAGG
TATGGGTGCGCCTCTTCAAGGGCGAGCGTGAGAACGCCATCTTCAGTGACGAGTTCGACACCTA
CATCACCTTCAGCGGCTACCTGGTCAAGCCGGCCTCCGAGCCCTAGCGGACACCCCTTGGAGCT
TCCACGGACTTCTGACCTCCTTGCCTGTCACCTGGCTTATCCCTGCATTCTACGGACACTGGAG
TCCTGCCCCAGGCTGACCCCGTTACCTCTCTCCTCCATCCCGGCTTCCTTGGCCTTGACTTCCT
CAGTTTTGGTTTTTGACAAGATGCCCTTGGCCACCGGGAAGCCCAAAGGTCCCGGATCTGGCTG
CCGATGGATGAGATCATTGGGCGGGGAGACTGTGTGGACATTGGGGGACCTCCAGCTTCTCCTG
TGTACACAGCCTTAGACGACCCTGTGCTGTGTTGTCCTGTGGCCACAGGGTGTTCCAGAGCACA
GCCCCTGTGTGTTTTCATTCCTGGACGCAAGTAAGCAAAGGTCGTGGGTTTCTTAGGGACGAAG
TAAAGCAGAAAAGAGAAAGAAAGCTGGTGTGTTAGTTTTGGCTTTCCAGCCAGCTTGGAGAGAG
GAGGGTGGGGGTGTGTGTGTTTGTACTGGGGAAACTGAGGCACAGAAAAAGCATGAATGGCTAC
AGAGGAGCTGCAGTTTGTGAGTTTGGAAACCACATCTGACTTAGCTCCGGGCCGGGCTTTCCTG
GGGACAGCAGGACGGACTTCTGCGCTCTGTTGACATGCTAGAGCTTTCCCCAGTGGCTTGTCAG
TCTTTCAGAGTCACCCTAGCAAAAGGGTTGGGGGAGGGCAGCAAGTGTCCTCTATGGTTGACTC
TAGGCTGGTGGCAGCATCCTGCTTGCTCCAACTCACAGGATCCTGACAGTGGCTGGGGACCTCA
GGGACTCCTGCAGGTTTTCTCTATATGAGAAATAAAGCTCCTACTATGTGCCAGTACCTCTCAG
CTCTGCTCCACACTTCCCCAGCCACTCTGGAGCGCAGGACGGGTGGGCTTTCTTGCCTGTTGGG
GTCTCGGGTCCCCGTTCTTCCTTCCAGATGGACTAACCACGGAAGGACCAGGCCTCTGCTTTGG
GTGCCATCAAACCGCCCCTCACCGCCCTGTGTCCCGCTCCTTCCCAGTTCAGCATCCCATGTGG
GTATGTGAGCTGGTGAGTCTGATAGACCTGCCGAGCCCTGACACAGCCTCGCAGCCTATGGCCA
TGTGATAGGGACTTCCTTTGGGTCCCAGAGCTGGGGGCGGAGGTGTAAAAATCTTCCTAAGTGG
TAGAAGAGGAAACAGGAAATTCATATCCCGCTGCCAGCTCAGACTCAGGGATGGCCTCGGGGCT
GACTCTCTGATTGCAGAGAATCTGTGTTCATTTCCCATCTCACCCCAGGTTGATCCCCAGGGCC
CGGGCCACTGGATATCTGCTTTGTGCCAACTAGGCCTTGCTTGCTGCTTCCTGGTGGCCCTTGG
TTAGGATCCTTCTCCTTCTGGAGCTCAGTGTGTACGTAAGCCGCCTCCGAAGAGGCTTCTGCTG
GTCAGACACTCCAAGCCGCTTTCCGTGGGCGCGCCTACAGCAGAGGCTGCTGCCTCCTGTGCTC
TACCTTGCTCTTTCCGGAAAACATTAAACTCACCATGGAGATCCACAGCAA

hide sequence

RefSeq Acc Id:

XM_006247801 ⟹ XP_006247863

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,164,405 - 104,180,253 (+)	NCBI
mRatBN7.2	10	103,666,100 - 103,681,662 (+)	NCBI
Rnor_6.0	10	107,461,266 - 107,477,160 (+)	NCBI
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI

Sequence:

show sequence

GGGAGCGGCCAATGCCCAAGGGAAGGTCGGCATCTTCCTGCCCTAGATGCTGCTAACATCAGCC
CACTGCCCTGCCCGGGGTGTGTTGCAGGCATTCATAAACAAATGTTCACGAAGGAGCGAAAGGA
TGTGGGATGTCAGGCTTCAGCAGGAGGATGATGTGTTTCTCAGCAGCTCCACGTGAGCCACGAA
TGCTTCACAATTCCTCCCTCCCCCTTGCCTGTCAGCTTTCCTATGCATAGCCAACTTCCCTGGA
ATAAACAAAAGGCTCTCTTGGTCCCCAGGGCGGGGCTTATTTTGTCTTTTCTAAGTGGAAAATA
ATGTGTACTTACTGCGAGGGAAGAGATGGGATTGTTGTAGGCGGAAAGAGGAAAACCCCCGGAG
AAGGCCAGGAAGATGGGCTCCCGTGGACAGGGATTCATGCTGGGATGCTGCCTGCTGCTGGCTG
TCACCTGGGGCCCGGTCCTGAGCCTTGTGCCACGAGTTCAGGAGGAACAACAGGAGTGGGAAGA
GACAGAGGAGCTGACATCTCCCCTGGATCATGTGACAAGGCCTGAAGAAACACACAAGAGGTAT
AGCCCTAGCCTGCGTGAGGGCCTCCCCACTTCCCGGTGCTATCGATGCTGTGATTCCAACCCTC
CAGTATACCAGACAATCCCTCCGCCCCAGATCAACATCACCATCCTAAAAGGTGAGAAAGGAGA
CCGAGGGGATCGAGGCCTGCAGGGGAAGTATGGCAAAATAGGTTCTACGGGTCCCAGGGGCCAC
ATTGGCCCCAAAGGGCAGAAGGGATCTATGGGAGCCCCTGGGGACCACTGCAAGAGCCAGTACG
CAGCCTTCTCTGTGGGCCGAAAGAAGGCTCTGCACAGTAACGACTACTTCCAGCCTGTGGTCTT
CGACACGGAGTTTGTGAACCTCTACAATCACTTCAACATGTTCACCGGGAAGTTCTACTGCTAC
GTGCCCGGCATCTACTTCTTCAGCCTCAACGTGCACACGTGGAACCAGAAGGAGACCTACCTGC
ACATCATGAAGAACGAGGAGGAGGTCGTGATCCTGTATGCGCAGGTGAGCGACCGCAGCATCAT
GCAGAGTCAGAGCCTGATGCTGGAGCTGCGAGAGCAGGATGAGGTATGGGTGCGCCTCTTCAAG
GGCGAGCGTGAGAACGCCATCTTCAGTGACGAGTTCGACACCTACATCACCTTCAGCGGCTACC
TGGTCAAGCCGGCCTCCGAGCCCTAGCGGACACCCCTTGGAGCTTCCACGGACTTCTGACCTCC
TTGCCTGTCACCTGGCTTATCCCTGCATTCTACGGACACTGGAGTCCTGCCCCAGGCTGACCCC
GTTACCTCTCTCCTCCATCCCGGCTTCCTTGGCCTTGACTTCCTCAGTTTTGGTTTTTGACAAG
ATGCCCTTGGCCACCGGGAAGCCCAAAGGTCCCGGATCTGGCTGCCGATGGATGAGATCATTGG
GCGGGGAGACTGTGTGGACATTGGGGGACCTCCAGCTTCTCCTGTGTACACAGCCTTAGACGAC
CCTGTGCTGTGTTGTCCTGTGGCCACAGGGTGTTCCAGAGCACAGCCCCTGTGTGTTTTCATTC
CTGGACGCAAGTAAGCAAAGGTCGTGGGTTTCTTAGGGACGAAGTAAAGCAGAAAAGAGAAAGA
AAGCTGGTGTGTTAGTTTTGGCTTTCCAGCCAGCTTGGAGAGAGGAGGGTGGGGGTGTGTGTGT
TTGTACTGGGGAAACTGAGGCACAGAAAAAGCATGAATGGCTACAGAGGAGCTGCAGTTTGTGA
GTTTGGAAACCACATCTGACTTAGCTCCGGGCCGGGCTTTCCTGGGGACAGCAGGACGGACTTC
TGCGCTCTGTTGACATGCTAGAGCTTTCCCCAGTGGCTTGTCAGTCTTTCAGAGTCACCCTAGC
AAAAGGGTTGGGGGAGGGCAGCAAGTGTCCTCTATGGTTGACTCTAGGCTGGTGGCAGCATCCT
GCTTGCTCCAACTCACAGGATCCTGACAGTGGCTGGGGACCTCAGGGACTCCTGCAGGTTTTCT
CTATATGAGAAATAAAGCTCCTACTATGTGCCAGTACCTCTCAGCTCTGCTCCACACTTCCCCA
GCCACTCTGGAGCGCAGGACGGGTGGGCTTTCTTGCCTGTTGGGGTCTCGGGTCCCCGTTCTTC
CTTCCAGATGGACTAACCACGGAAGGACCAGGCCTCTGCTTTGGGTGCCATCAAACCGCCCCTC
ACCGCCCTGTGTCCCGCTCCTTCCCAGTTCAGCATCCCATGTGGGTATGTGAGCTGGTGAGTCT
GATAGACCTGCCGAGCCCTGACACAGCCTCGCAGCCTATGGCCATGTGATAGGGACTTCCTTTG
GGTCCCAGAGCTGGGGGCGGAGGTGTAAAAATCTTCCTAAGTGGTAGAAGAGGAAACAGGAAAT
TCATATCCCGCTGCCAGCTCAGACTCAGGGATGGCCTCGGGGCTGACTCTCTGATTGCAGAGAA
TCTGTGTTCATTTCCCATCTCACCCCAGGTTGATCCCCAGGGCCCGGGCCACTGGATATCTGCT
TTGTGCCAACTAGGCCTTGCTTGCTGCTTCCTGGTGGCCCTTGGTTAGGATCCTTCTCCTTCTG
GAGCTCAGTGTGTACGTAAGCCGCCTCCGAAGAGGCTTCTGCTGGTCAGACACTCCAAGCCGCT
TTCCGTGGGCGCGCCTACAGCAGAGGCTGCTGCCTCCTGTGCTCTACCTTGCTCTTTCCGGAAA
ACATTAAACTCACCATGGAGATCCACAGCAA

hide sequence

RefSeq Acc Id:

XM_063269243 ⟹ XP_063125313

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,164,218 - 104,180,253 (+)	NCBI

RefSeq Acc Id:

XM_063269244 ⟹ XP_063125314

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	104,159,554 - 104,180,253 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001007676	(Get FASTA)	NCBI Sequence Viewer
	XP_006247862	(Get FASTA)	NCBI Sequence Viewer
	XP_006247863	(Get FASTA)	NCBI Sequence Viewer
	XP_063125313	(Get FASTA)	NCBI Sequence Viewer
	XP_063125314	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83720	(Get FASTA)	NCBI Sequence Viewer
	EDM06763	(Get FASTA)	NCBI Sequence Viewer
	EDM06764	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000070390
	ENSRNOP00000070390.2
	ENSRNOP00055044146
	ENSRNOP00060044918
	ENSRNOP00065005084
GenBank Protein	Q5XIG2	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001007676 ⟸ NM_001007675
- Peptide Label:	precursor
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A6HL59 (UniProtKB/TrEMBL), A0A0G2JXS9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRGQGFMLGCCLLLAVTWGPVLSLVPRVQEEQQEWEETEELTSPLDHVTRPEETHKRYSPSL REGLPTSRCYRCCDSNPPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHIGPK GQKGSMGAPGDHCKSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYNHFNMFTGKFYCYVPGI YFFSLNVHTWNQKETYLHIMKNEEEVVILYAQVSDRSIMQSQSLMLELREQDEVWVRLFKGERE NAIFSDEFDTYITFSGYLVKPASEP hide sequence

RefSeq Acc Id:	XP_006247863 ⟸ XM_006247801
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A6HL59 (UniProtKB/TrEMBL), A0A0G2JXS9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSRGQGFMLGCCLLLAVTWGPVLSLVPRVQEEQQEWEETEELTSPLDHVTRPEETHKRYSPSL REGLPTSRCYRCCDSNPPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHIGPK GQKGSMGAPGDHCKSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYNHFNMFTGKFYCYVPGI YFFSLNVHTWNQKETYLHIMKNEEEVVILYAQVSDRSIMQSQSLMLELREQDEVWVRLFKGERE NAIFSDEFDTYITFSGYLVKPASEP hide sequence

RefSeq Acc Id:	XP_006247862 ⟸ XM_006247800
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A6HL59 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQSTISRPLAALGCVENTEPGGPGLVSRTRSRSLRGILDVRSQRLDHRLRKMGSRGQGFMLGCC LLLAVTWGPVLSLVPRVQEEQQEWEETEELTSPLDHVTRPEETHKRYSPSLREGLPTSRCYRCC DSNPPVYQTIPPPQINITILKGEKGDRGDRGLQGKYGKIGSTGPRGHIGPKGQKGSMGAPGDHC KSQYAAFSVGRKKALHSNDYFQPVVFDTEFVNLYNHFNMFTGKFYCYVPGIYFFSLNVHTWNQK ETYLHIMKNEEEVVILYAQVSDRSIMQSQSLMLELREQDEVWVRLFKGERENAIFSDEFDTYIT FSGYLVKPASEP hide sequence

RefSeq Acc Id:

ENSRNOP00000004373 ⟸ ENSRNOT00000004373

RefSeq Acc Id:

ENSRNOP00000070390 ⟸ ENSRNOT00000087404

RefSeq Acc Id:	XP_063125314 ⟸ XM_063269244
- Peptide Label:	isoform X1
- UniProtKB:	Q5XIG2 (UniProtKB/Swiss-Prot), A6HL59 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063125313 ⟸ XM_063269243
- Peptide Label:	isoform X2

Protein Domains

C1q Collagen-like

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XIG2-F1-model_v2	AlphaFold	Q5XIG2	1-281	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1359204	AgrOrtholog
BioCyc Gene	G2FUF-22513	BioCyc
Ensembl Genes	ENSRNOG00000003259	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055030773	UniProtKB/Swiss-Prot
	ENSRNOG00060031216	UniProtKB/Swiss-Prot
	ENSRNOG00065005012	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000087404	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000087404.2	UniProtKB/Swiss-Prot
	ENSRNOT00055053402	UniProtKB/Swiss-Prot
	ENSRNOT00060054169	UniProtKB/Swiss-Prot
	ENSRNOT00065007327	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.120.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7190841	IMAGE-MGC_LOAD
InterPro	C1q_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Collagen	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Tumour_necrosis_fac-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:303701	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:94614	IMAGE-MGC_LOAD
NCBI Gene	303701	ENTREZGENE
PANTHER	CEREBELLIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	COMPLEMENT C1Q TUMOR NECROSIS FACTOR-RELATED PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	C1q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Collagen	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	C1qtnf1	PhenoGen
PRINTS	COMPLEMNTC1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000003259	RatGTEx
	ENSRNOG00055030773	RatGTEx
	ENSRNOG00060031216	RatGTEx
	ENSRNOG00065005012	RatGTEx
SMART	C1Q	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49842	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JXS9	ENTREZGENE, UniProtKB/TrEMBL
	A6HL59	ENTREZGENE, UniProtKB/TrEMBL
	C1QT1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-03-09	C1qtnf1	C1q and TNF related 1	C1qtnf1	C1q and tumor necrosis factor related protein 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-30	C1qtnf1	C1q and tumor necrosis factor related protein 1			Symbol and Name status set to approved	1299863	APPROVED
2005-07-29	C1qtnf1	C1q and tumor necrosis factor related protein 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar