C1QTNF1 (C1q and TNF related 1) - Rat Genome Database

Name: C1QTNF1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: C1QTNF1 (C1q and TNF related 1) Sus scrofa

Analyze

Symbol:

C1QTNF1

Name:

C1q and TNF related 1

RGD ID:

14214287

Description:

ENCODES a protein that exhibits collagen binding (inferred); identical protein binding (inferred); INVOLVED IN negative regulation of platelet activation (ortholog); FOUND IN extracellular space (inferred); integral component of plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

C1q and tumor necrosis factor related protein 1; complement C1q tumor necrosis factor-related protein 1

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Squirrel

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	3,161,359 - 3,170,076 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	3,161,355 - 3,181,470 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of platelet activation (ISO)

negative regulation of platelet aggregation (IEA)

positive regulation of aldosterone secretion (IEA)

positive regulation of cytosolic calcium ion concentration (IEA)

positive regulation of gene expression (IEA)

positive regulation of MAPK cascade (IEA)

positive regulation of protein kinase B signaling (IEA)

regulation of glucose metabolic process (IEA)

Cellular Component

extracellular space (IEA)

integral component of plasma membrane (IEA)

Molecular Function

collagen binding (IEA)

identical protein binding (IEA)

protein binding (ISO)

References

Genomics

Comparative Map Data

C1QTNF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	3,161,359 - 3,170,076 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	3,161,355 - 3,181,470 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

C1QTNF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	17	79,022,814 - 79,049,788 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	17	79,022,934 - 79,049,788 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	17	77,019,016 - 77,045,870 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	74,531,846 - 74,557,465 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	17	74,531,845 - 74,557,464	NCBI
Celera	17	73,618,468 - 73,644,096 (+)	NCBI
Cytogenetic Map	17	q25.3	NCBI
HuRef	17	72,441,799 - 72,468,640 (+)	NCBI		HuRef
CHM1_1	17	77,082,932 - 77,109,786 (+)	NCBI		CHM1_1

C1qtnf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	118,319,187 - 118,342,608 (+)	NCBI	GRCm39		mm39
GRCm38	11	118,428,457 - 118,451,782 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	118,428,203 - 118,449,963 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	118,295,167 - 118,311,277 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	118,249,943 - 118,266,053 (+)	NCBI			mm8
Celera	11	130,179,331 - 130,195,511 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI

C1qtnf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	10	107,455,845 - 107,477,160 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	107,455,845 - 107,477,162 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	107,090,843 - 107,112,158 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	108,431,984 - 108,452,099 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	10	108,446,487 - 108,466,600 (+)	NCBI
Celera	10	102,220,917 - 102,241,022 (+)	NCBI		Celera
Cytogenetic Map	10	q32.3	NCBI

C1qtnf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955506	3,679,704 - 3,699,503 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955506	3,680,352 - 3,700,729 (-)	NCBI	ChiLan1.0	ChiLan1.0

C1QTNF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	17	78,643,266 - 78,669,386 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	78,644,531 - 78,669,386 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	17	73,099,560 - 73,126,304 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

C1QTNF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	9	2,402,945 - 2,404,053 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	9	2,401,369 - 2,405,595 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

C1qtnf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936594	3,338,863 - 3,358,137 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C1QTNF1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	70,993,035 - 71,018,240 (+)	NCBI
ChlSab1.1 Ensembl	16	70,992,936 - 71,018,327 (+)	Ensembl

C1qtnf1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624801	8,349,894 - 8,368,168 (+)	NCBI

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium
Low	10	4	3	5	2	19	2	3	1
Below cutoff						4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021066513	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066514	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021066515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FJ428536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01040442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSSCT00000058660 ⟹ ENSSSCP00000045850

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	12	3,161,359 - 3,170,076 (-)	Ensembl

RefSeq Acc Id:

XM_021066513 ⟹ XP_020922172

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	3,161,355 - 3,181,470 (-)	NCBI

Sequence:

show sequence

CTGCCCTCCGGGCACACACACAGTTAATCCTCGCGGCTGCTGTTTGGATAAAATGCGCTGGGAG
CGTTCGCGGCTCCGCGGCCACTCACATCTGGCCGGGGTTTGCTCTTGACGCGTCTGTCCTGCTT
GCTTCAGCTCTTCCTCTACTTTCGAGAAACCGCGTTTCCGCTTCTGGTCAAAGAGACCTTGGAG
CAGGGGAGATCCAGGTGCCGGCGGCAAGGGCCGGCTGTTGCCCCCGCCCACGCCCCCCCTTTCT
GAGCTCTTCCCTTCTGCCTGCTCTCCGGCGGCGGCCCGTCTGGTCGTCCCCCGACCTGGCCGGG
ACGAGGCTGCCCCGCTGGGAGATGCTGTAAGAGAGGCTGTGGGAGGACGCGGGCGCCCCGCTCC
TGGACGCTGGTGGCTGGAGCAGGGCTCGCCAGGAAGATGGGCTCCCGTGGGCTGGGACTCACGC
TGACATGCTGTCTGCTGCTGGCCTTCGCCGGCGGCCCGGTGCTGGGCCGTGCGCCCTGGGGGCA
GGAGGGGACCGAGGAGCCGCCGCTGGACCGCACTGAGAGGGCTGAAGAAAAGCGTGAGACGTAC
AGCCCCCTTCAGGGCGAGGAGCCCCCTGCTTCCCGGTGCTTCCGCTGCTGTGACCCTGGCACTC
CCGTGTACCAGGCCATCCCGGTGCCACAGATCAACATCACCATACTGAAAGGTGAGAAGGGCGA
CCGCGGCGACCGGGGCCTGCAGGGCAAGTACGGCAAAACAGGCTCGGCAGGCGCCAGGGGCCAC
ACGGGACCCAAGGGGCAAAAGGGGTCCATGGGGGCCCCCGGGGACCGGTGCAAGAACCACTACG
CCGCCTTCTCGGTGGGCCGGAAGAAGCCGCTGCACAGCAACGACTACTACCAGACGGTGATCTT
CGACACGGAGTTCGTGAACCTCTACGGCCACTTCAACATGTTCACCGGGAAGTTCTACTGCTAC
GTGCCCGGCGTCTACTTCTTCAGCCTCAACGTGCACACCTGGAACCAGAAGGAGACGTACCTGC
ACATCATGAAGAACGCGGAGGAGGTGGTGATCCTGTACGCGCAGGTGAGCGACCGCAGCATCAT
GCAGAGCCAGAGCCTGATGCTGGAGCTGCGGGACCAGGACGAGGTGTGGGTGCGCCTCTTCAAG
GGCGAGCGCGAGAACGCCATCTTCAGCGACGAGTTCGACACCTACATCACCTTCAGCGGCTACC
TGGTCAAGCCCGCCACCGAGCCCTAGCCGCCCGCGCCCTCCTGCCCCGCCGCCTCCCCCCCGCC
CCCGCCCGCCTGGTGCCCCCCCGCGGTCCAGCACCTGCCAACCCTGGGCCGCCCCTGCCCCGGC
CAGTCTTCCTGCCCCCCCCACATCCCCAGCTTTGGCGTCGACACGACACCCTCGCAGGCGTGGG
AGGCCACATCGACCCTGTGGTCACCGGCCTCCCGTGACTGCAGAAGAACTCAGTCGGTGGGGCT
CGCGGGAGCCCCTCTCTGTGTGCGTGTCCTTGAGTGACCCTTCACCCCGCATGCGCCAGGGTGT
CCCAGAAGAAACCACCCTTGCTCCTGTTGTGGAATATTCCAGAGGTTGTGAAGGGAGCGAAGTA
AGCCACGGAAAAGAAGTGAGGCATATTGTTATGTTTGCCTTTCCGCCAGCCCCACTGGCTCCAG
GAGGGCTGCAGCCGCTCGAGGCTGCAGGAGACTCCTTGGAAGAGAAGCTCTAAAGTGGATGCCG
AAGGTGACAGGGGAAGGGGGCCGGGGTGGCGTGGGGGAGGGGACCAGGAAATCACATCTGGCTT
AATATTTCAGGCCATGGATGAACCTTCTGGGGGGACGGCTGGCTGACATCCATGTCCTGGGGAC
ATCCCCATGGCCTTGAACGAGGGCTCAGCCAGTCTTTTGAGCCACGACAGTGAGGGGGTTTGGG
CTGGGCAGCAAGTGTCACTCCCCAGAGGGACAGCCAAGCCCTCGGCTGTGGTCTCTGGGTTGGG
AGAAGCACCCTGCTTGATGGAACCTTGAGGCTCCTGGCAGCAGCTGGGGACCCCAGGGGCCCCA
GACCTAAGGCAGTTCTGTGAGGAGCAAAGCTCAGTCCAGCCAAGCAGAGGCGTGCCTCCTGGCA
AGGCCCTGGTCCTGCCCCCCCTTGGCCCTGGTCCTGCCCACCCCGATGGCCCTGCTCCTGCCCC
CCATGGTGCTGCTTCATTCCCTTCGTGTCCTGGGCAGGGGCTCCCCACCTGTCACCCTGGCCCT
GGCTTTCTGTCCCTCCTCGCAGGCGGATCAGCCGTGGAAGGCACCAGTGCCTCTGATTTGTAGC
AGTGTCATGGTTGTAGAACGTTTTCTAGAAAACCTGGCACACCATCTCAGAGTTACACTTCCCA
GAGGGAAGGCCCCCAGTACCCCTACGCCGGGGGCCTCTCTGACAGGCAGCCTCAGACGATGCAG
GAGGGGCCTTTCCAGAGCAGGGGAGGGCTGGAAGGGCCCCCCCCGCCTGTCCCTGGAGCTCCAG
TGTGGCTCAGCCTCCGCGAGAGGAGAGAGGGCGTGTTGTAACCACTGAGGTCAGAAGCCCCACT
CTGAGGGGGCCATGGGGCACCCGGAGCGGGGCGCTGCCTGGACCGGTGCTCTGGCCTGGCGGCC
CTTCCCCACCTCTCTCTGCTGACGCCCAGGGCCCTCAGCCCTGCAGAAGGCTCCCTTCCCGCTG
GTCAGACCTGTGAGCCCTGGTCTTGACCGAGCCCTCCGCCTGCTCTGGGCCTGGTCACGGGGTC
TGGAGTCTGCACATCCCTTACTCTGAAGGACTTCTGCTGGTCAGACTTTACAAACTGTGTTTCC
GAGGGTGAGCTGGTGAGCAGGGCGCCCACCGCTGCTTTGTGCTGCCCCCACGCTTTTTCAGAAA
ACATTAAACTTGGACTTGTGTGTTTCAGCA

hide sequence

RefSeq Acc Id:

XM_021066514 ⟹ XP_020922173

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	3,161,355 - 3,181,470 (-)	NCBI

Sequence:

show sequence

CTGCCCTCCGGGCACACACACAGTTAATCCTCGCGGCTGCTGTTTGGATAAAATGCGCTGGGAG
CGTTCGCGGCTCCGCGGCCACTCACATCTGGCCGGGGTTTGCTCTTGACGCGTCTGTCCTGCTT
GCTTCAGCTCTTCCTCTACTTTCGAGAAACCGCGTTTCCGCTTCTGGTCAAAGAGACCTTGGAG
CAGGGGAGATCCAGGTGCCGGCGGCAAGGGCCGGCTGTTGCCCCCGCCCACGCCCCCCCTTTCT
GAGCTCTTCCCTTCTGCCTGCTCTCCGGCGGCGGCCCGTCTGGTCGTCCCCCGACCTGGCCGGG
ACGAGGCTGCCCCGCTGGGAGATGCTGTAAGAGAGGCTGTGGGAGGACGCGGGCGCCCCGCTCC
TGGACGCTGGTGGCTGGAGGGCTCGCCAGGAAGATGGGCTCCCGTGGGCTGGGACTCACGCTGA
CATGCTGTCTGCTGCTGGCCTTCGCCGGCGGCCCGGTGCTGGGCCGTGCGCCCTGGGGGCAGGA
GGGGACCGAGGAGCCGCCGCTGGACCGCACTGAGAGGGCTGAAGAAAAGCGTGAGACGTACAGC
CCCCTTCAGGGCGAGGAGCCCCCTGCTTCCCGGTGCTTCCGCTGCTGTGACCCTGGCACTCCCG
TGTACCAGGCCATCCCGGTGCCACAGATCAACATCACCATACTGAAAGGTGAGAAGGGCGACCG
CGGCGACCGGGGCCTGCAGGGCAAGTACGGCAAAACAGGCTCGGCAGGCGCCAGGGGCCACACG
GGACCCAAGGGGCAAAAGGGGTCCATGGGGGCCCCCGGGGACCGGTGCAAGAACCACTACGCCG
CCTTCTCGGTGGGCCGGAAGAAGCCGCTGCACAGCAACGACTACTACCAGACGGTGATCTTCGA
CACGGAGTTCGTGAACCTCTACGGCCACTTCAACATGTTCACCGGGAAGTTCTACTGCTACGTG
CCCGGCGTCTACTTCTTCAGCCTCAACGTGCACACCTGGAACCAGAAGGAGACGTACCTGCACA
TCATGAAGAACGCGGAGGAGGTGGTGATCCTGTACGCGCAGGTGAGCGACCGCAGCATCATGCA
GAGCCAGAGCCTGATGCTGGAGCTGCGGGACCAGGACGAGGTGTGGGTGCGCCTCTTCAAGGGC
GAGCGCGAGAACGCCATCTTCAGCGACGAGTTCGACACCTACATCACCTTCAGCGGCTACCTGG
TCAAGCCCGCCACCGAGCCCTAGCCGCCCGCGCCCTCCTGCCCCGCCGCCTCCCCCCCGCCCCC
GCCCGCCTGGTGCCCCCCCGCGGTCCAGCACCTGCCAACCCTGGGCCGCCCCTGCCCCGGCCAG
TCTTCCTGCCCCCCCCACATCCCCAGCTTTGGCGTCGACACGACACCCTCGCAGGCGTGGGAGG
CCACATCGACCCTGTGGTCACCGGCCTCCCGTGACTGCAGAAGAACTCAGTCGGTGGGGCTCGC
GGGAGCCCCTCTCTGTGTGCGTGTCCTTGAGTGACCCTTCACCCCGCATGCGCCAGGGTGTCCC
AGAAGAAACCACCCTTGCTCCTGTTGTGGAATATTCCAGAGGTTGTGAAGGGAGCGAAGTAAGC
CACGGAAAAGAAGTGAGGCATATTGTTATGTTTGCCTTTCCGCCAGCCCCACTGGCTCCAGGAG
GGCTGCAGCCGCTCGAGGCTGCAGGAGACTCCTTGGAAGAGAAGCTCTAAAGTGGATGCCGAAG
GTGACAGGGGAAGGGGGCCGGGGTGGCGTGGGGGAGGGGACCAGGAAATCACATCTGGCTTAAT
ATTTCAGGCCATGGATGAACCTTCTGGGGGGACGGCTGGCTGACATCCATGTCCTGGGGACATC
CCCATGGCCTTGAACGAGGGCTCAGCCAGTCTTTTGAGCCACGACAGTGAGGGGGTTTGGGCTG
GGCAGCAAGTGTCACTCCCCAGAGGGACAGCCAAGCCCTCGGCTGTGGTCTCTGGGTTGGGAGA
AGCACCCTGCTTGATGGAACCTTGAGGCTCCTGGCAGCAGCTGGGGACCCCAGGGGCCCCAGAC
CTAAGGCAGTTCTGTGAGGAGCAAAGCTCAGTCCAGCCAAGCAGAGGCGTGCCTCCTGGCAAGG
CCCTGGTCCTGCCCCCCCTTGGCCCTGGTCCTGCCCACCCCGATGGCCCTGCTCCTGCCCCCCA
TGGTGCTGCTTCATTCCCTTCGTGTCCTGGGCAGGGGCTCCCCACCTGTCACCCTGGCCCTGGC
TTTCTGTCCCTCCTCGCAGGCGGATCAGCCGTGGAAGGCACCAGTGCCTCTGATTTGTAGCAGT
GTCATGGTTGTAGAACGTTTTCTAGAAAACCTGGCACACCATCTCAGAGTTACACTTCCCAGAG
GGAAGGCCCCCAGTACCCCTACGCCGGGGGCCTCTCTGACAGGCAGCCTCAGACGATGCAGGAG
GGGCCTTTCCAGAGCAGGGGAGGGCTGGAAGGGCCCCCCCCGCCTGTCCCTGGAGCTCCAGTGT
GGCTCAGCCTCCGCGAGAGGAGAGAGGGCGTGTTGTAACCACTGAGGTCAGAAGCCCCACTCTG
AGGGGGCCATGGGGCACCCGGAGCGGGGCGCTGCCTGGACCGGTGCTCTGGCCTGGCGGCCCTT
CCCCACCTCTCTCTGCTGACGCCCAGGGCCCTCAGCCCTGCAGAAGGCTCCCTTCCCGCTGGTC
AGACCTGTGAGCCCTGGTCTTGACCGAGCCCTCCGCCTGCTCTGGGCCTGGTCACGGGGTCTGG
AGTCTGCACATCCCTTACTCTGAAGGACTTCTGCTGGTCAGACTTTACAAACTGTGTTTCCGAG
GGTGAGCTGGTGAGCAGGGCGCCCACCGCTGCTTTGTGCTGCCCCCACGCTTTTTCAGAAAACA
TTAAACTTGGACTTGTGTGTTTCAGCA

hide sequence

RefSeq Acc Id:

XM_021066515 ⟹ XP_020922174

RefSeq Status:

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	12	3,161,355 - 3,166,301 (-)	NCBI

Sequence:

show sequence

AGCAGGGCTCGCCAGGAAGATGGGCTCCCGTGGGCTGGGACTCACGCTGACATGCTGTCTGCTG
CTGGCCTTCGCCGGCGGCCCGGTGCTGGGCCGTGCGCCCTGGGGGCAGGAGGGGACCGAGGAGC
CGCCGCTGGACCGCACTGAGAGGGCTGAAGAAAAGCGTGAGACGTACAGCCCCCTTCAGGGCGA
GGAGCCCCCTGCTTCCCGGTGCTTCCGCTGCTGTGACCCTGGCACTCCCGTGTACCAGGCCATC
CCGGTGCCACAGATCAACATCACCATACTGAAAGGTGAGAAGGGCGACCGCGGCGACCGGGGCC
TGCAGGGCAAGTACGGCAAAACAGGCTCGGCAGGCGCCAGGGGCCACACGGGACCCAAGGGGCA
AAAGGGGTCCATGGGGGCCCCCGGGGACCGGTGCAAGAACCACTACGCCGCCTTCTCGGTGGGC
CGGAAGAAGCCGCTGCACAGCAACGACTACTACCAGACGGTGATCTTCGACACGGAGTTCGTGA
ACCTCTACGGCCACTTCAACATGTTCACCGGGAAGTTCTACTGCTACGTGCCCGGCGTCTACTT
CTTCAGCCTCAACGTGCACACCTGGAACCAGAAGGAGACGTACCTGCACATCATGAAGAACGCG
GAGGAGGTGGTGATCCTGTACGCGCAGGTGAGCGACCGCAGCATCATGCAGAGCCAGAGCCTGA
TGCTGGAGCTGCGGGACCAGGACGAGGTGTGGGTGCGCCTCTTCAAGGGCGAGCGCGAGAACGC
CATCTTCAGCGACGAGTTCGACACCTACATCACCTTCAGCGGCTACCTGGTCAAGCCCGCCACC
GAGCCCTAGCCGCCCGCGCCCTCCTGCCCCGCCGCCTCCCCCCCGCCCCCGCCCGCCTGGTGCC
CCCCCGCGGTCCAGCACCTGCCAACCCTGGGCCGCCCCTGCCCCGGCCAGTCTTCCTGCCCCCC
CCACATCCCCAGCTTTGGCGTCGACACGACACCCTCGCAGGCGTGGGAGGCCACATCGACCCTG
TGGTCACCGGCCTCCCGTGACTGCAGAAGAACTCAGTCGGTGGGGCTCGCGGGAGCCCCTCTCT
GTGTGCGTGTCCTTGAGTGACCCTTCACCCCGCATGCGCCAGGGTGTCCCAGAAGAAACCACCC
TTGCTCCTGTTGTGGAATATTCCAGAGGTTGTGAAGGGAGCGAAGTAAGCCACGGAAAAGAAGT
GAGGCATATTGTTATGTTTGCCTTTCCGCCAGCCCCACTGGCTCCAGGAGGGCTGCAGCCGCTC
GAGGCTGCAGGAGACTCCTTGGAAGAGAAGCTCTAAAGTGGATGCCGAAGGTGACAGGGGAAGG
GGGCCGGGGTGGCGTGGGGGAGGGGACCAGGAAATCACATCTGGCTTAATATTTCAGGCCATGG
ATGAACCTTCTGGGGGGACGGCTGGCTGACATCCATGTCCTGGGGACATCCCCATGGCCTTGAA
CGAGGGCTCAGCCAGTCTTTTGAGCCACGACAGTGAGGGGGTTTGGGCTGGGCAGCAAGTGTCA
CTCCCCAGAGGGACAGCCAAGCCCTCGGCTGTGGTCTCTGGGTTGGGAGAAGCACCCTGCTTGA
TGGAACCTTGAGGCTCCTGGCAGCAGCTGGGGACCCCAGGGGCCCCAGACCTAAGGCAGTTCTG
TGAGGAGCAAAGCTCAGTCCAGCCAAGCAGAGGCGTGCCTCCTGGCAAGGCCCTGGTCCTGCCC
CCCCTTGGCCCTGGTCCTGCCCACCCCGATGGCCCTGCTCCTGCCCCCCATGGTGCTGCTTCAT
TCCCTTCGTGTCCTGGGCAGGGGCTCCCCACCTGTCACCCTGGCCCTGGCTTTCTGTCCCTCCT
CGCAGGCGGATCAGCCGTGGAAGGCACCAGTGCCTCTGATTTGTAGCAGTGTCATGGTTGTAGA
ACGTTTTCTAGAAAACCTGGCACACCATCTCAGAGTTACACTTCCCAGAGGGAAGGCCCCCAGT
ACCCCTACGCCGGGGGCCTCTCTGACAGGCAGCCTCAGACGATGCAGGAGGGGCCTTTCCAGAG
CAGGGGAGGGCTGGAAGGGCCCCCCCCGCCTGTCCCTGGAGCTCCAGTGTGGCTCAGCCTCCGC
GAGAGGAGAGAGGGCGTGTTGTAACCACTGAGGTCAGAAGCCCCACTCTGAGGGGGCCATGGGG
CACCCGGAGCGGGGCGCTGCCTGGACCGGTGCTCTGGCCTGGCGGCCCTTCCCCACCTCTCTCT
GCTGACGCCCAGGGCCCTCAGCCCTGCAGAAGGCTCCCTTCCCGCTGGTCAGACCTGTGAGCCC
TGGTCTTGACCGAGCCCTCCGCCTGCTCTGGGCCTGGTCACGGGGTCTGGAGTCTGCACATCCC
TTACTCTGAAGGACTTCTGCTGGTCAGACTTTACAAACTGTGTTTCCGAGGGTGAGCTGGTGAG
CAGGGCGCCCACCGCTGCTTTGTGCTGCCCCCACGCTTTTTCAGAAAACATTAAACTTGGACTT
GTGTGTTTCAGCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020922172	(Get FASTA)	NCBI Sequence Viewer
	XP_020922173	(Get FASTA)	NCBI Sequence Viewer
	XP_020922174	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ACJ60643	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_020922173 ⟸ XM_021066514

- Sequence:

show sequence

MGSRGLGLTLTCCLLLAFAGGPVLGRAPWGQEGTEEPPLDRTERAEEKRETYSPLQGEEPPASR
CFRCCDPGTPVYQAIPVPQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGA
PGDRCKNHYAAFSVGRKKPLHSNDYYQTVIFDTEFVNLYGHFNMFTGKFYCYVPGVYFFSLNVH
TWNQKETYLHIMKNAEEVVILYAQVSDRSIMQSQSLMLELRDQDEVWVRLFKGERENAIFSDEF
DTYITFSGYLVKPATEP

hide sequence

RefSeq Acc Id:

XP_020922172 ⟸ XM_021066513

- Sequence:

show sequence

MGSRGLGLTLTCCLLLAFAGGPVLGRAPWGQEGTEEPPLDRTERAEEKRETYSPLQGEEPPASR
CFRCCDPGTPVYQAIPVPQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGA
PGDRCKNHYAAFSVGRKKPLHSNDYYQTVIFDTEFVNLYGHFNMFTGKFYCYVPGVYFFSLNVH
TWNQKETYLHIMKNAEEVVILYAQVSDRSIMQSQSLMLELRDQDEVWVRLFKGERENAIFSDEF
DTYITFSGYLVKPATEP

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RefSeq Acc Id:

XP_020922174 ⟸ XM_021066515

- Sequence:

show sequence

MGSRGLGLTLTCCLLLAFAGGPVLGRAPWGQEGTEEPPLDRTERAEEKRETYSPLQGEEPPASR
CFRCCDPGTPVYQAIPVPQINITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGA
PGDRCKNHYAAFSVGRKKPLHSNDYYQTVIFDTEFVNLYGHFNMFTGKFYCYVPGVYFFSLNVH
TWNQKETYLHIMKNAEEVVILYAQVSDRSIMQSQSLMLELRDQDEVWVRLFKGERENAIFSDEF
DTYITFSGYLVKPATEP

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RefSeq Acc Id:

ENSSSCP00000045850 ⟸ ENSSSCT00000058660

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000035511	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSSCP00000045850	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000058660	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.40	UniProtKB/TrEMBL
InterPro	C1q_dom	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
	Tumour_necrosis_fac-like_dom	UniProtKB/TrEMBL
NCBI Gene	C1QTNF1	ENTREZGENE
Pfam	C1q	UniProtKB/TrEMBL
	Collagen	UniProtKB/TrEMBL
PRINTS	COMPLEMNTC1Q	UniProtKB/TrEMBL
PROSITE	C1Q	UniProtKB/TrEMBL
SMART	C1Q	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49842	UniProtKB/TrEMBL
UniGene	Ssc.74409	ENTREZGENE
UniProt	A0A287BMC7_PIG	UniProtKB/TrEMBL
	B7U3Y6_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:85981	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)