C1QTNF1 (C1q and TNF related 1) - Rat Genome Database
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Gene: C1QTNF1 (C1q and TNF related 1) Sus scrofa
Analyze
Symbol: C1QTNF1
Name: C1q and TNF related 1
RGD ID: 14214287
Description: ENCODES a protein that exhibits collagen binding (inferred); identical protein binding (inferred); INVOLVED IN negative regulation of platelet activation (ortholog); FOUND IN extracellular space (inferred); integral component of plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: C1q and tumor necrosis factor related protein 1; complement C1q tumor necrosis factor-related protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,161,359 - 3,170,076 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,161,355 - 3,181,470 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
C1QTNF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,161,359 - 3,170,076 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,161,355 - 3,181,470 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
C1QTNF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1779,022,814 - 79,049,788 (+)EnsemblGRCh38hg38GRCh38
GRCh381779,022,934 - 79,049,788 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371777,019,016 - 77,045,870 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361774,531,846 - 74,557,465 (+)NCBINCBI36hg18NCBI36
Build 341774,531,845 - 74,557,464NCBI
Celera1773,618,468 - 73,644,096 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1772,441,799 - 72,468,640 (+)NCBIHuRef
CHM1_11777,082,932 - 77,109,786 (+)NCBICHM1_1
C1qtnf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,319,187 - 118,342,608 (+)NCBIGRCm39mm39
GRCm3811118,428,457 - 118,451,782 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,428,203 - 118,449,963 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711118,295,167 - 118,311,277 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611118,249,943 - 118,266,053 (+)NCBImm8
Celera11130,179,331 - 130,195,511 (+)NCBICelera
Cytogenetic Map11E2NCBI
C1qtnf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010107,455,845 - 107,477,160 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10107,455,845 - 107,477,162 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010107,090,843 - 107,112,158 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410108,431,984 - 108,452,099 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110108,446,487 - 108,466,600 (+)NCBI
Celera10102,220,917 - 102,241,022 (+)NCBICelera
Cytogenetic Map10q32.3NCBI
C1qtnf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555063,679,704 - 3,699,503 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555063,680,352 - 3,700,729 (-)NCBIChiLan1.0ChiLan1.0
C1QTNF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11778,643,266 - 78,669,386 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1778,644,531 - 78,669,386 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01773,099,560 - 73,126,304 (+)NCBIMhudiblu_PPA_v0panPan3
C1QTNF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl92,402,945 - 2,404,053 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.192,401,369 - 2,405,595 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
C1qtnf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365943,338,863 - 3,358,137 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1QTNF1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11670,993,035 - 71,018,240 (+)NCBI
ChlSab1.1 Ensembl1670,992,936 - 71,018,327 (+)Ensembl
C1qtnf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248018,349,894 - 8,368,168 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 10 4 3 5 2 19 2 3 1
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000058660   ⟹   ENSSSCP00000045850
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl123,161,359 - 3,170,076 (-)Ensembl
RefSeq Acc Id: XM_021066513   ⟹   XP_020922172
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1123,161,355 - 3,181,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021066514   ⟹   XP_020922173
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1123,161,355 - 3,181,470 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021066515   ⟹   XP_020922174
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1123,161,355 - 3,166,301 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020922172 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922173 (Get FASTA)   NCBI Sequence Viewer  
  XP_020922174 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ACJ60643 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_020922173   ⟸   XM_021066514
- Sequence:
RefSeq Acc Id: XP_020922172   ⟸   XM_021066513
- Sequence:
RefSeq Acc Id: XP_020922174   ⟸   XM_021066515
- Sequence:
RefSeq Acc Id: ENSSSCP00000045850   ⟸   ENSSSCT00000058660


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000035511 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000045850 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000058660 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/TrEMBL
NCBI Gene C1QTNF1 ENTREZGENE
Pfam C1q UniProtKB/TrEMBL
  Collagen UniProtKB/TrEMBL
PRINTS COMPLEMNTC1Q UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/TrEMBL
SMART C1Q UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/TrEMBL
UniGene Ssc.74409 ENTREZGENE
UniProt A0A287BMC7_PIG UniProtKB/TrEMBL
  B7U3Y6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:85981 ENTREZGENE